Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014771

Physical Location & Seq

Genomic Coordinates Forward (+)

19641324 .. 19642291

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTAAAGTTTGCCGTTCAATTGAGACAGAGCCTAGAACCTTGAGTGAAGGGCAACTCAACCGTGCTAGGGAAATTGCTGCTGATGTAGTTCAGAAAATGGAACCAACTGAAGCCACAGCTCTATTCATTGAGACTAAGCTTCTGGACTGGAAGGAGGAGGCTCAAATTTTAGAAAGGCCTTGCCAATGCTTGTGCTCTACGGCCATTGTTGAAACGCCCGATCAAGAAACGCAACTTATTACAGGACCTGTGTCGGCCCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

4.56

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32180
malus_domestica	MD09G1205700.v1.1 MD17G1186400.v1.1
prunus_persica	Prupe.3G061100_v2.0.a1 Prupe.3G061100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0140071
rosa_laevigata	RLG00000019846
rosa_multiflora	Rmu_sc0003365.1_g000002 Rmu_sc0013099.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105080
rosa_rugosa	Rorug02G0360900 Rorug02G0360900
rosa_samantha	Rh2AG411600 Rh2BG421900 Rh2CG397700 Rh2DG431300
rosa_wichuraiana	Rw2G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	21, 215
AluBI	AGCT	2 cut(s)	122, 142
AluI	AGCT	2 cut(s)	122, 142
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	20, 128
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	179, 204, 258
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	248, 259
AvaII	GGWCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	20, 128
BfaI	CTAG	2 cut(s)	36, 69
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 259
BmiI	GGNNCC	2 cut(s)	105, 261
BoxI	GACNNNNGTC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	3 cut(s)	181, 206, 260
BsiHKAI	GWGCWC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	20, 128
BsnI	GGCC	3 cut(s)	181, 206, 260
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	3 cut(s)	181, 206, 260
BspLI	GGNNCC	2 cut(s)	105, 261
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	20, 128
BstMBI	GATC	1 cut(s)	223
BstPAI	GACNNNNGTC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	181, 206, 260
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	248, 259
CviJI	RGCY	9 cut(s)	5, 34, 116, 122, 142, 164, 181, 206, 260
CviKI_1	RGCY	9 cut(s)	5, 34, 116, 122, 142, 164, 181, 206, 260
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	36, 69
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	181, 206, 260
HindIII	AAGCTT	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	146, 227
HpyAV	CCTTC	2 cut(s)	44, 148
HpyCH4III	ACNGT	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	131, 136, 231, 264
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	36, 69
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	3 cut(s)	21, 75, 168
MnlI	CCTC	2 cut(s)	151, 154
MunI	CAATTG	1 cut(s)	21
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	105, 261
PceI	AGGCCT	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	248
PshAI	GACNNNNGTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	105, 261
PspPI	GGNCC	2 cut(s)	248, 259
PspPPI	RGGWCCY	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	251
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	248, 259
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	4 cut(s)	44, 124, 144, 253
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	21, 75, 168
SseBI	AGGCCT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	36, 69
StuI	AGGCCT	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	65
TasI	AATT	3 cut(s)	21, 75, 168
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	2 cut(s)	36, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.