MD17G1186400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014771
Physical Location & Seq
Forward (+)
22267519 .. 22268213
695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1186400.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGCTAAAGTTTGCTGTTCAATCGAGACGGAGCCTAGAACCTTGAGTGAAGGGCAACTCAACCATGCTAGGGAAATAGCTGCTGATGTCGTTGAGAAAATGGAACCAACAGAAGCCTCAGCTATATTCATTGAAGGACTGAGACCAGTACTTGATTCAGTGAAGGAGATGAAGCATATGACTGACGAAGAGGGTGAGCAACTACAATTGCAGACTAAGCTTGTGGAGTGGAAGGAGGAGGCTCAAATTTTAGAAGGGCCTTGCCAATGCTTGTGCTCTACTGCCATTGTTGAAACTCCCGATCAAGAAACGCGGCTTACAGAACCCGTGTCGGCCCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.72

Weight (kDa)

4.43

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 313
AciI CCGC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 3 cut(s) 21, 134, 293
AluBI AGCT 3 cut(s) 80, 122, 220
AluI AGCT 3 cut(s) 80, 122, 220
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 20, 136
AoxI GGCC 2 cut(s) 257, 333
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 257, 334
AsuHPI GGTGA 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 20, 136
BfaI CTAG 2 cut(s) 36, 69
BisI GCNGC 2 cut(s) 81, 314
BlsI GCNGC 2 cut(s) 82, 315
BmcAI AGTACT 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 257, 334
BmiI GGNNCC 3 cut(s) 33, 105, 336
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 131, 132
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 259, 335
BsiHKAI GWGCWC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 20, 136
BsmBI CGTCTC 1 cut(s) 20
BsnI GGCC 2 cut(s) 259, 335
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 259, 335
BspCNI CTCAG 2 cut(s) 131, 132
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 33, 105, 336
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 146
BssMI GATC 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 118, 140, 216
BstFNI CGCG 1 cut(s) 313
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 20, 136
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 259, 335
BtsIMutI CAGTG 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 257, 334
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 65
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 3 cut(s) 118, 140, 216
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 66, 125, 177, 179
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 81, 314
Fsp4HI GCNGC 2 cut(s) 81, 314
FspBI CTAG 2 cut(s) 36, 69
GluI GCNGC 2 cut(s) 81, 314
HaeIII GGCC 2 cut(s) 259, 335
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 25, 299, 305
HpyAV CCTTC 5 cut(s) 44, 128, 157, 226, 248
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 118, 140, 216
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 159
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 2 cut(s) 36, 69
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 200
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 2 cut(s) 206, 246
MnlI CCTC 4 cut(s) 127, 184, 229, 232
MunI CAATTG 1 cut(s) 206
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeI CATATG 1 cut(s) 177
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 33, 105, 336
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 82, 315
PspN4I GGNNCC 3 cut(s) 33, 105, 336
PspPI GGNCC 2 cut(s) 257, 334
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SatI GCNGC 2 cut(s) 81, 314
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 257, 334
ScaI AGTACT 1 cut(s) 150
SduI GDGCHC 1 cut(s) 278
SetI ASST 4 cut(s) 44, 82, 124, 222
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 206, 246
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 36, 69
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 206, 246
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 1 cut(s) 165
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 118, 185
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 165
XapI RAATTY 1 cut(s) 246
XspI CTAG 2 cut(s) 36, 69
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.