Rroxscaffold_2G00105080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014771
Physical Location & Seq
Forward (+)
28525061 .. 28526131
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105080.1

Sequence Viewer

Length: 336 bp
ATGGCCAAAGTTTGTTGCTCCATTGAGATGGAGCCTAGGACCTTGAGTCAAGTACAGCTCAACCATGCTAGGGAAATAGCTGCAGATGTGGTTGAGAAAATGGAACCAAATGAAGCCTCAGCTACATTCAGTGAGGGATTGAGACCAATTAGTTCAAAGAGACAGATGGAGCAGGAAGATGCTGATGGAGACGGTGAAGAACCTAAGAATAAGTTAATTCTGGGGTTGGAGGAGGCTCAAGTGTATGAAAGACCCTGCCAATGCTTGTGTGCTGCTGCCAATATTGAAACCCCAGATCAAGAAAAGCTTAAGGAACCCCTCTCGGCCCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

4.53

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 70
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 156, 287
AhdI GACNNNNNGTC 1 cut(s) 45
AluBI AGCT 4 cut(s) 58, 80, 122, 307
AluI AGCT 4 cut(s) 58, 80, 122, 307
Alw26I GTCTC 3 cut(s) 136, 154, 183
AoxI GGCC 2 cut(s) 3, 324
ApeKI GCWGC 3 cut(s) 80, 272, 275
AspA2I CCTAGG 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 39, 325
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 39
AvrII CCTAGG 1 cut(s) 35
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 67, 259, 262
BccI CCATC 3 cut(s) 22, 160, 179
BcoDI GTCTC 3 cut(s) 136, 154, 183
BfaI CTAG 2 cut(s) 36, 69
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 3 cut(s) 81, 273, 276
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 3 cut(s) 82, 274, 277
Bme18I GGWCC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 39, 325
BmiI GGNNCC 4 cut(s) 33, 105, 315, 327
BmsI GCATC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 2 cut(s) 64, 222
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 3 cut(s) 67, 259, 262
BshFI GGCC 2 cut(s) 5, 326
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 3 cut(s) 136, 154, 183
BsmBI CGTCTC 1 cut(s) 183
BsnI GGCC 2 cut(s) 5, 326
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 2 cut(s) 5, 326
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 4 cut(s) 33, 105, 315, 327
BspMAI CTGCAG 1 cut(s) 85
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 118, 204
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 3 cut(s) 136, 154, 183
BstMBI GATC 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 67, 259, 262
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 5, 326
BtsIMutI CAGTG 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 39, 325
Csp6I GTAC 1 cut(s) 53
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 5, 34, 58, 80, 116, 122, 236, 307, 326
CviKI_1 RGCY 9 cut(s) 5, 34, 58, 80, 116, 122, 236, 307, 326
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 118, 204
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DriI GACNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 246
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 81, 273, 276
Fsp4HI GCNGC 3 cut(s) 81, 273, 276
FspBI CTAG 2 cut(s) 36, 69
GluI GCNGC 3 cut(s) 81, 273, 276
HaeIII GGCC 2 cut(s) 5, 326
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 46
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 118, 204
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 3 cut(s) 23, 31, 169
LpnPI CCDG 4 cut(s) 158, 206, 268, 306
Lsp1109I GCAGC 3 cut(s) 67, 259, 262
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 36, 69
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 2 cut(s) 188, 209
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 147, 216
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 127, 127, 223, 226, 329
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 215, 309
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 308
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 4 cut(s) 33, 105, 315, 327
NmeAIII GCCGAG 1 cut(s) 302
PkrI GCNGC 3 cut(s) 82, 274, 277
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 4 cut(s) 33, 105, 315, 327
PspPI GGNCC 2 cut(s) 39, 325
PspPPI RGGWCCY 1 cut(s) 39
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 215, 309
SatI GCNGC 3 cut(s) 81, 273, 276
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 2 cut(s) 39, 325
SchI GAGTC 1 cut(s) 55
SetI ASST 6 cut(s) 44, 60, 82, 124, 205, 309
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 3 cut(s) 43, 237, 308
SmoI CTYRAG 3 cut(s) 43, 237, 308
Sse9I AATT 2 cut(s) 147, 216
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 36, 69
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 194
TasI AATT 2 cut(s) 147, 216
TatI WGTACW 1 cut(s) 52
Tru1I TTAA 2 cut(s) 215, 309
Tru9I TTAA 2 cut(s) 215, 309
TscAI CASTG 1 cut(s) 136
TseI GCWGC 3 cut(s) 80, 272, 275
TspDTI ATGAA 2 cut(s) 126, 261
TspRI CASTG 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 39
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.