Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014771

Physical Location & Seq

Genomic Coordinates Reverse (-)

61057439 .. 61059784

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGCCAGTCTATGCATGCATCAACAATACTACTGATCGATGATAGTACCACCGCTGGTGTTTTTGAGAAATTTGAGCTCGATCAAGTCTGTTCGTTTTTCATGGCCAAAGTTTGTTGCTCCATTGAGATGGAACCTAGGACCTTGAGTCAAGTACAACTCAACCATGCTAGGGAAATGGCTGAAGATGTGGTTCAGAAAATGGAATCAAACGAAGCCTCAGCTACATTCAGTGAGGGATTGAGACCGATTGGTTCAGAGACACAGGTGGACCATGTAAATATTGCTGAAGCGGGTGAAGAACCACAGAATAAGCTAATTCTGGAGTCGGAGGAGGCTCAACTGTCTGAAAGACCATGCCAATGCTTGTGTGCTGCTGCCAATATTGATACCCGTGATCAAGAAAAGCTTAAGGAACCCCTCTCGGCCCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.02

Weight (kDa)

4.42

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32180
malus_domestica	MD09G1205700.v1.1 MD17G1186400.v1.1
prunus_persica	Prupe.3G061100_v2.0.a1 Prupe.3G061100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0140071
rosa_laevigata	RLG00000019846
rosa_multiflora	Rmu_sc0003365.1_g000002 Rmu_sc0013099.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105080
rosa_rugosa	Rorug02G0360900 Rorug02G0360900
rosa_samantha	Rh2AG411600 Rh2BG421900 Rh2CG397700 Rh2DG431300
rosa_wichuraiana	Rw2G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 293
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	204, 309
AfaI	GTAC	2 cut(s)	49, 156
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	410
AhdI	GACNNNNNGTC	1 cut(s)	147
AluBI	AGCT	4 cut(s)	79, 224, 316, 409
AluI	AGCT	4 cut(s)	79, 224, 316, 409
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	238, 254
AoxI	GGCC	3 cut(s)	4, 105, 426
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	1 cut(s)	71
AspA2I	CCTAGG	1 cut(s)	137
AspS9I	GGNCC	4 cut(s)	4, 141, 271, 427
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	141, 271
AvrII	CCTAGG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	361, 364
BccI	CCATC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	238, 254
BfaI	CTAG	2 cut(s)	138, 171
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	375, 378
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	376, 379
Bme18I	GGWCC	2 cut(s)	141, 271
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	4 cut(s)	4, 141, 271, 427
BmiI	GGNNCC	3 cut(s)	135, 417, 429
BmsI	GCATC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	361, 364
BshFI	GGCC	3 cut(s)	6, 107, 428
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	238, 254
BsnI	GGCC	3 cut(s)	6, 107, 428
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	36, 82, 397
BspACI	CCGC	2 cut(s)	54, 293
BspANI	GGCC	3 cut(s)	6, 107, 428
BspCNI	CTCAG	1 cut(s)	233
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	135, 417, 429
BspTI	CTTAAG	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	36, 82, 397
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	345
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	220
BstKTI	GATC	3 cut(s)	39, 85, 400
BstMAI	GTCTC	2 cut(s)	238, 254
BstMBI	GATC	3 cut(s)	36, 82, 397
BstNSI	RCATGY	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	361, 364
BstXI	CCANNNNNNTGG	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	6, 107, 428
BsuTUI	ATCGAT	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	4 cut(s)	4, 141, 271, 427
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	48, 155
CviAII	CATG	5 cut(s)	17, 103, 167, 275, 357
CviQI	GTAC	2 cut(s)	48, 155
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	3 cut(s)	38, 84, 399
DpnII	GATC	3 cut(s)	36, 82, 397
DriI	GACNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	141, 271
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	204, 309
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	2 cut(s)	18, 22
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	5 cut(s)	20, 106, 170, 278, 360
FaiI	YATR	6 cut(s)	14, 18, 104, 168, 276, 358
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	5 cut(s)	16, 102, 166, 274, 356
FauI	CCCGC	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	375, 378
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	375, 378
FspBI	CTAG	2 cut(s)	138, 171
GluI	GCNGC	2 cut(s)	375, 378
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	6, 107, 428
Hin1II	CATG	5 cut(s)	20, 106, 170, 278, 360
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	3 cut(s)	148, 206, 326
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	198, 259, 331, 349
Hpy188III	TCNNGA	2 cut(s)	323, 401
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	16, 20
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	20, 106, 170, 278, 360
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	36, 82, 397
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	20, 42, 251, 308
Lsp1109I	GCAGC	2 cut(s)	361, 364
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	138, 171
MalI	GATC	3 cut(s)	38, 84, 399
MboI	GATC	3 cut(s)	36, 82, 397
MboII	GAAGA	2 cut(s)	197, 311
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	71, 318
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	157, 335
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	229, 229, 325, 328, 431
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	2 cut(s)	18, 22
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	128, 361
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	410
NdeII	GATC	3 cut(s)	36, 82, 397
NlaIII	CATG	5 cut(s)	20, 106, 170, 278, 360
NlaIV	GGNNCC	3 cut(s)	135, 417, 429
NmeAIII	GCCGAG	1 cut(s)	404
NsiI	ATGCAT	2 cut(s)	18, 22
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	376, 379
PleI	GAGTC	2 cut(s)	156, 334
PpsI	GAGTC	2 cut(s)	156, 334
PpuMI	RGGWCCY	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	135, 417, 429
PspPI	GGNCC	4 cut(s)	4, 141, 271, 427
PspPPI	RGGWCCY	1 cut(s)	141
RsaI	GTAC	2 cut(s)	49, 156
RsaNI	GTAC	2 cut(s)	48, 155
RseI	CAYNNNNRTG	2 cut(s)	128, 361
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	375, 378
Sau3AI	GATC	3 cut(s)	36, 82, 397
Sau96I	GGNCC	4 cut(s)	4, 141, 271, 427
SchI	GAGTC	2 cut(s)	157, 335
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	81, 139, 146, 226, 270, 318, 411
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	2 cut(s)	141, 271
SmiMI	CAYNNNNRTG	2 cut(s)	128, 361
SmlI	CTYRAG	2 cut(s)	145, 410
SmoI	CTYRAG	2 cut(s)	145, 410
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	2 cut(s)	71, 318
SsiI	CCGC	2 cut(s)	54, 293
SspI	AATATT	2 cut(s)	283, 385
SspMI	CTAG	2 cut(s)	138, 171
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	39, 81
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	71, 318
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	374, 377
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	141, 271
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	20
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	2 cut(s)	138, 171
Zsp2I	ATGCAT	2 cut(s)	18, 22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.