FvH4_6g32970

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005746
Physical Location & Seq
Reverse (-)
26026025 .. 26035825
9801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32970.t2

Sequence Viewer

Length: 3606 bp
ATGTACGGCGGCTCATCCAAGCACGGCCGATTAGGCGGCGGCGCCGGCCGGGGAGCCGGAGCCGCTAAGCTCGGCCGAGCCTCCTTCCCTCCGCCGCACCGCTCCTCCACCCCCGCGGCCAACCGCCTCTCCCTCGGCGGCTCCAACAACAGTCGAGGAGGCCGTAACTCCGCCCCTGGCACCTCAGCCTCCGCCGCGGCCCCGGCCGTGGAGGAGAAGTTCAGCCTCGTCTCCGGCAACAATCCGGTGGCGTTCTCCATGATCATTCGGCTGGTGCCGGACCTGGTCGAAGAGATCAAGCGCGTCGAAGCCCAAGGTGGGACCCCCCGCATCAAATTTGATTCCTTCTCTAATAATCCCAACGGCAATGTTATTGATGTGGGAGGGAAGGAGTTCAGATTTACATGGTCTCGGGATGGTGACCTCTGCGACATATATGAAGAACGTAAGACTGGTGAAGATGGGAATGGTTTGCTTGTTGAATCAGGATGTGCATGGCGCAAAGTGAATGTTCAGCGCATATTGGATGAATCAACTAAGAATCATGTGAAGAGGATGTCAGAGGAAGCAGAACGCATGCATAAATCACGGAAAGCCATTGTGCTAGAACAAAATCCAGCTATGAAGAATCAACTAGCGCAATATGATACCACGGCAAATTGTTCATGGAGAAATTTCAAACACAAGAAAGAGCCTCCCTCTAAAAAGCAGAAAGTGGAACCACCTCAAGTTTCAGTTCCTCCAAAGTCTGCATTTAAATCCGGGGTATCATCAGTAACTACTGCAAAGGGTAGACCATCATCATCACCTCTTCCGTCGACACCTGAGAAGTCTGCATCTCCATTTGGAATGCTAAATATTTCAAAGACTCGTGCAAGTGCAGATGAAACTATACCCTCCAAGGTCATTATTAAGGACAAACCTACTCCTAGCTTGGATAAAGAAACCTCAATCAGGACTAGTGCAGCAATGGAAACTGCTGGCAAAGGCAGTGGTCGAGCTAGGCCGACAGATTTGCAGAGTTTGTTGATTACACTGCTCATGGAGAATCCCAAGGGGATGAGCTTAAAGGCTTTGGAGAAAGGTATTGGAGATTCATTTCCCAACTGTGCAAAGAAAATCGAGTCCATTCTTAAGAAGATTGCAAATTGCCAAGTTCCAGGGAAGTATCTCTTGAAACCAGGGGTGGAGTTAGAAAGCTTCAAGAAACCCTTGTTTGAATCTGGAAGTTCCCCAGAAGAGAGCCTTCGCCAGACTCCTGCAGCAGATGACATCTGTGATCAAAGGCCTGCTCAAGAACCAGAGATTAAGGAGAAGGTTTCTTCCATTGAAATGGAGGAACAAGGCCAAGGACACTTCAATGCTACAGTTGGAGAAGAACTACAGGCATTCCAAAAAATTGATAACCAACAGCAGTCACCTGATCTTTTTGGTGAAAAAAGAGCCTCTGACAACAGTGAAGCCCGAGTAGCTAGTTCTACTTCTAGTGAGAGTGGAAGTGACAGTGACAGTGAAAGTGACAGCAGTGATTCCGGAAGTGACAGTGGAAGTCCTAGCAGAAGTAGAAGCAGAAGTAAAAGCCCAATAGGAAGTGGGAGTGGGAGTAGTAGTGATAGTGACAGTGACTTGTCTTCTAATAGCAAGGAGGTTTCTGATGAGGATGTGAACATTATGAGTGATGATGATAAAGAGCCCAAACATCAAACACAAGCCTCTGAAGCTGCTTTGCCCGTTCAATGGGGAACTCCTGATGGCAGGCCTGCCCAGAGTGGGAATGATGACAAGCAAGATGATTCTGATGCAATTGATATTGAAACTGTGGAACAGGATACTGAATTGGCTGTTATTAGTAGCTCCTTGCCTAGTGAACAACCTGTCATTGAAACAAAATCCTCTCCACCCGAGCATGTTGAGCATCATGACCGCCAAAATCTTGTAGACAGTTTGTTTGGAAAGACTACAGACAAGGATGACTTCAGGAAAAGGTCAAAAATGGAAAACTCATCACAACCTTCTGCTTCTCTGGGTAAGGGTGTTCAATTTTCAGAAGATTCTCATAACTTGTCTCCTGATAGACTCATTGAAGGCTCTTATAAGGGCCCTGTATCTCAAATGCTGAATAAAACTGATAGGGATGGAAATACTGAGCTTGGCTCTCAAAAGGGCTATACTCAAGCAGTTTCTGGAAGATATAGCTCAGAGTCTAAACAATCAAGTCAAAAGTCTTATGATCATAGTGCACAAGCCAAGGCTCCTGAGCAAGGAGAAAGACCTGATAGATATTCCGAGAGCTTGGGCCTTGGTCTACAGTACTCTGAAAAGAGCTCTCATGTGCATGAAGGCTTTCCCATGCGTAAAGATAATGTTCATAGTAGTAGTCAAAAGGACGGATATGCTAATGAAAAGAAGGTTCCAAGAAATTCCAAGGAAGGTGGTTCACGAGGCAAACAATCAGTACCCTTGGACTCCCACTACCAGAAACATGGTGACGTGGCTGGAAAAATCAAGGAAGATAGACAGCTTTCAAGCGTGCTCTTCAGTTCTTCGCCGAGGGAAAATAGGAATGGAGCCGACAGATCCCCAGTTGTTAATGGTAGAGCTAGTAAACTCCAAAGAGAGGTTTCAGAATTGGAGTTGGGCGAACTTCGTGAGGCTGTAGCTGAGGAAACACCAGTTAAGAAGCAATTTGAGAGAAAAAATTCATTTAAGCAGTCAGAAGCCAAACTGGGCACTAGGGATAACTGGGCTCCGGACTTCAGTAAAGCAAAACCCGCAGGAAAGACAAGTTTAGAATTGGGTAAACCATCCTCACCAGATTTAAACTTGAAGTTTCCTAGTAACGCAGAAGGCTTAGTTAAAAAAAGGAAGTATGAAGATCGTATTGAGGATTTAACGGGGTCTCAACAGAGAGCTCTGCAATCTCAGTCACAGCACCTTTCACGAGTAGATCATTCTGATGTGGTGCGCCCATTCAGCAGATCAGCAGATAATGGTGGTAAATCCACACATAATGAAGTTGGGGGCAGACAAGGGATCAGTTTGGATGGCTATGGAGAAAGCAATAAGAAAGCATCTCTTAGTGCTTCTCAGCACCATGACTCTAAACAAGGGTCACTGACCCACACCAATAAAGAAAGTAAAAGACCTGCATCTAGTATGGTGATAGAACAGACTGATGTACGAAAGGATTCAATGTTGGCAGAGGGCACCGACAGTGATAGAAAAAGAAGGGATTCTTCTTCTGATGAAAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCTGAGCTCAAGGGACCAATAAAAGATTTTTCTCAATACAAGGAGTATGTGCAAGAATATCGTGATAAGTATGATAGCTACTGCTCCTTGAACAAGATCTTAGAGAGTTACAGGAATGAGTTCCTAAAGCTAGGGAAGGACCTTGAATTTGCTACAGGCACAGAGAGATATTATAACATCTTGGACCAGCTGAAGGAATCCTATCGCCAGTGTGGATCGAGACATAAGAGGCTCAAGAAAATATTTGTGGTGCTTCATGAGGAACTAAAGCACCTTAAGGAAAGGATTAAAGACTTTGCACTCCCATACACGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1202

Amino Acids

131.76

Weight (kDa)

7.6

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1128 - 1223 1.1e-18 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2094, 3459
Acc36I ACCTGC 1 cut(s) 3154
AccB1I GGYRCC 4 cut(s) 41, 179, 274, 3206
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 4 cut(s) 793, 818, 1938, 2305
AccII CGCG 3 cut(s) 116, 197, 303
AccIII TCCGGA 2 cut(s) 1532, 2749
AclWI GGATC 3 cut(s) 2571, 3041, 3508
AcoI YGGCCR 5 cut(s) 25, 46, 73, 117, 204
AcsI RAATTY 5 cut(s) 335, 673, 2419, 2698, 3431
AcuI CTGAAG 5 cut(s) 1737, 1960, 2521, 2740, 3497
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 4 cut(s) 5, 2312, 2457, 3180
AfiI CCNNNNNNNGG 8 cut(s) 208, 318, 954, 1737, 1770, 2261, 2617, 3478
AflII CTTAAG 2 cut(s) 1133, 3560
AhlI ACTAGT 1 cut(s) 959
AjiI CACGTC 1 cut(s) 2491
AjnI CCWGG 4 cut(s) 175, 282, 1159, 1180
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
Alw21I GWGCWC 5 cut(s) 2242, 2327, 2535, 2914, 3294
Alw26I GTCTC 5 cut(s) 235, 414, 2070, 2904, 3499
Alw44I GTGCAC 1 cut(s) 2238
AlwI GGATC 3 cut(s) 2571, 3041, 3508
AlwNI CAGNNNCTG 1 cut(s) 2183
Ama87I CYCGRG 3 cut(s) 411, 1464, 1901
Aor13HI TCCGGA 2 cut(s) 1532, 2749
ApaI GGGCCC 1 cut(s) 2102
ApaLI GTGCAC 1 cut(s) 2238
ApeKI GCWGC 3 cut(s) 965, 1262, 1721
ApoI RAATTY 5 cut(s) 335, 673, 2419, 2698, 3431
ArsI GACNNNNNNTTYG 4 cut(s) 1931, 1963, 3416, 3448
Asp700I GAANNNNTTC 6 cut(s) 392, 2343, 2698, 3187, 3232, 3404
AspLEI GCGC 6 cut(s) 44, 303, 501, 519, 640, 2967
AspS9I GGNCC 9 cut(s) 199, 280, 321, 2098, 2099, 2296, 3299, 3424, 3469
AsuC2I CCSGG 3 cut(s) 50, 203, 763
AsuHPI GGTGA 8 cut(s) 431, 467, 798, 1410, 1445, 2498, 2802, 3172
AvaI CYCGRG 3 cut(s) 411, 1464, 1901
AvaII GGWCC 5 cut(s) 280, 321, 3299, 3424, 3469
BaeGI GKGCMC 4 cut(s) 2102, 2242, 2732, 3209
BanI GGYRCC 4 cut(s) 41, 179, 274, 3206
BanII GRGCYC 6 cut(s) 1695, 2102, 2327, 2749, 2914, 3294
BauI CACGAG 3 cut(s) 870, 2439, 2940
BbsI GAAGAC 1 cut(s) 1623
Bbv12I GWGCWC 5 cut(s) 2242, 2327, 2535, 2914, 3294
BbvCI CCTCAGC 2 cut(s) 184, 2661
BbvI GCAGC 3 cut(s) 977, 1274, 1708
BccI CCATC 7 cut(s) 410, 455, 805, 1745, 2129, 2812, 3038
BceAI ACGGC 6 cut(s) 22, 40, 147, 191, 379, 669
BcgI CGANNNNNNTGC 4 cut(s) 997, 1031, 3326, 3360
BciT130I CCWGG 4 cut(s) 177, 284, 1161, 1182
BciVI GTATCC 1 cut(s) 1822
BclI TGATCA 3 cut(s) 261, 1279, 2230
BcnI CCSGG 3 cut(s) 50, 203, 763
BcoDI GTCTC 5 cut(s) 235, 414, 2070, 2904, 3499
BcuI ACTAGT 1 cut(s) 959
BfmI CTRYAG 7 cut(s) 1260, 1365, 1382, 1959, 2306, 2655, 3438
BfoI RGCGCY 1 cut(s) 45
BfrI CTTAAG 2 cut(s) 1133, 3560
BfuAI ACCTGC 1 cut(s) 3154
BfuI GTATCC 1 cut(s) 1822
BglI GCCNNNNNGGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 3381
BlpI GCTNAGC 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 2312
Bme1390I CCNGG 7 cut(s) 50, 177, 203, 284, 763, 1161, 1182
Bme18I GGWCC 5 cut(s) 280, 321, 3299, 3424, 3469
BmeT110I CYCGRG 3 cut(s) 411, 1464, 1901
BmgBI CACGTC 1 cut(s) 2491
BmgT120I GGNCC 9 cut(s) 199, 280, 321, 2098, 2099, 2296, 3299, 3424, 3469
BmrFI CCNGG 7 cut(s) 50, 177, 203, 284, 763, 1161, 1182
BmrI ACTGGG 3 cut(s) 2576, 2735, 2752
BmsI GCATC 6 cut(s) 339, 845, 1789, 1924, 3080, 3158
BmuI ACTGGG 3 cut(s) 2576, 2735, 2752
BpiI GAAGAC 1 cut(s) 1623
BplI GAGNNNNNCTC 4 cut(s) 683, 715, 2138, 2170
Bpu10I CCTNAGC 4 cut(s) 184, 2256, 2661, 3288
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 5 cut(s) 711, 1278, 2157, 3278, 3503
BpuMI CCSGG 3 cut(s) 50, 203, 763
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 414, 2904
BsaWI WCCGGW 3 cut(s) 244, 1532, 2749
Bsc4I CCNNNNNNNGG 8 cut(s) 208, 318, 954, 1737, 1770, 2261, 2617, 3478
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 6 cut(s) 457, 2582, 2672, 2730, 2747, 3493
Bse3DI GCAATG 2 cut(s) 373, 975
BseAI TCCGGA 2 cut(s) 1532, 2749
BseBI CCWGG 4 cut(s) 177, 284, 1161, 1182
BseLI CCNNNNNNNGG 8 cut(s) 208, 318, 954, 1737, 1770, 2261, 2617, 3478
BseMI GCAATG 2 cut(s) 373, 975
BseMII CTCAG 9 cut(s) 198, 816, 2136, 2211, 2247, 2652, 2936, 3101, 3279
BseNI ACTGG 6 cut(s) 457, 2582, 2672, 2730, 2747, 3493
BseRI GAGGAG 3 cut(s) 94, 171, 227
BseSI GKGCMC 4 cut(s) 2102, 2242, 2732, 3209
BseX3I CGGCCG 4 cut(s) 25, 46, 73, 204
BseXI GCAGC 3 cut(s) 977, 1274, 1708
BsgI GTGCAG 2 cut(s) 900, 984
Bsh1236I CGCG 3 cut(s) 116, 197, 303
Bsh1285I CGRYCG 4 cut(s) 28, 49, 76, 207
BshNI GGYRCC 4 cut(s) 41, 179, 274, 3206
BsiEI CGRYCG 4 cut(s) 28, 49, 76, 207
BsiHKAI GWGCWC 5 cut(s) 2242, 2327, 2535, 2914, 3294
BsiHKCI CYCGRG 3 cut(s) 411, 1464, 1901
BslFI GGGAC 2 cut(s) 334, 3312
BslI CCNNNNNNNGG 8 cut(s) 208, 318, 954, 1737, 1770, 2261, 2617, 3478
BsmAI GTCTC 5 cut(s) 235, 414, 2070, 2904, 3499
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 334, 3312
BsmI GAATGC 2 cut(s) 855, 1388
Bso31I GGTCTC 2 cut(s) 414, 2904
BsoBI CYCGRG 3 cut(s) 411, 1464, 1901
Bsp120I GGGCCC 1 cut(s) 2098
Bsp13I TCCGGA 2 cut(s) 1532, 2749
Bsp1720I GCTNAGC 1 cut(s) 66
BspCNI CTCAG 9 cut(s) 197, 817, 2137, 2210, 2248, 2653, 2935, 3100, 3280
BspEI TCCGGA 2 cut(s) 1532, 2749
BspFNI CGCG 3 cut(s) 116, 197, 303
BspHI TCATGA 2 cut(s) 1918, 3541
BspMAI CTGCAG 1 cut(s) 1264
BspMI ACCTGC 1 cut(s) 3154
BspPI GGATC 3 cut(s) 2571, 3041, 3508
BspQI GCTCTTC 1 cut(s) 2540
BspT107I GGYRCC 4 cut(s) 41, 179, 274, 3206
BspTI CTTAAG 2 cut(s) 1133, 3560
BspTNI GGTCTC 2 cut(s) 414, 2904
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 373, 975
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 6 cut(s) 457, 2582, 2672, 2730, 2747, 3493
BssAI RCCGGY 1 cut(s) 44
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 3 cut(s) 870, 2439, 2940
BssT1I CCWWGG 8 cut(s) 313, 900, 1053, 1348, 2247, 2299, 2424, 2460
Bst2BI CACGAG 3 cut(s) 870, 2439, 2940
Bst2UI CCWGG 4 cut(s) 177, 284, 1161, 1182
Bst6I CTCTTC 5 cut(s) 285, 545, 816, 1233, 2540
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 1133, 3560
BstC8I GCNNGC 7 cut(s) 46, 578, 982, 1290, 1757, 1761, 2531
BstDSI CCRYGG 4 cut(s) 114, 195, 207, 651
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 2 cut(s) 952, 2259
BstFNI CGCG 3 cut(s) 116, 197, 303
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 6 cut(s) 44, 303, 501, 519, 640, 2967
BstMAI GTCTC 5 cut(s) 235, 414, 2070, 2904, 3499
BstMCI CGRYCG 4 cut(s) 28, 49, 76, 207
BstNI CCWGG 4 cut(s) 177, 284, 1161, 1182
BstNSI RCATGY 2 cut(s) 580, 1910
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 7 cut(s) 48, 175, 201, 282, 761, 1159, 1180
BstSFI CTRYAG 7 cut(s) 1260, 1365, 1382, 1959, 2306, 2655, 3438
BstSLI GKGCMC 4 cut(s) 2102, 2242, 2732, 3209
BstUI CGCG 3 cut(s) 116, 197, 303
BstV1I GCAGC 3 cut(s) 977, 1274, 1708
BstV2I GAAGAC 1 cut(s) 1623
BstX2I RGATCY 2 cut(s) 2576, 3381
BstXI CCANNNNNNTGG 2 cut(s) 1333, 2483
BstYI RGATCY 2 cut(s) 2576, 3381
BstZI CGGCCG 4 cut(s) 25, 46, 73, 204
BsuI GTATCC 1 cut(s) 1822
BtgI CCRYGG 4 cut(s) 114, 195, 207, 651
BtrI CACGTC 1 cut(s) 2491
BtsI GCAGTG 3 cut(s) 997, 1034, 1531
BveI ACCTGC 1 cut(s) 3154
Cac8I GCNNGC 7 cut(s) 46, 578, 982, 1290, 1757, 1761, 2531
CaiI CAGNNNCTG 1 cut(s) 2183
CciI TCATGA 2 cut(s) 1918, 3541
CfoI GCGC 6 cut(s) 44, 303, 501, 519, 640, 2967
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 9 cut(s) 199, 280, 321, 2098, 2099, 2296, 3299, 3424, 3469
Cfr42I CCGCGG 2 cut(s) 117, 198
CseI GACGC 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 282
Csp6I GTAC 4 cut(s) 4, 2311, 2456, 3179
CspCI CAANNNNNGTGG 4 cut(s) 973, 1008, 2413, 2448
CviQI GTAC 4 cut(s) 4, 2311, 2456, 3179
DinI GGCGCC 1 cut(s) 43
DraI TTTAAA 2 cut(s) 757, 2820
EaeI YGGCCR 5 cut(s) 25, 46, 73, 117, 204
EagI CGGCCG 4 cut(s) 25, 46, 73, 204
Eam1104I CTCTTC 5 cut(s) 285, 545, 816, 1233, 2540
EarI CTCTTC 5 cut(s) 285, 545, 816, 1233, 2540
EciI GGCGGA 3 cut(s) 81, 160, 181
Ecl136II GAGCTC 3 cut(s) 2325, 2912, 3292
EclXI CGGCCG 4 cut(s) 25, 46, 73, 204
Eco130I CCWWGG 8 cut(s) 313, 900, 1053, 1348, 2247, 2299, 2424, 2460
Eco147I AGGCCT 2 cut(s) 1288, 1759
Eco24I GRGCYC 6 cut(s) 1695, 2102, 2327, 2749, 2914, 3294
Eco31I GGTCTC 2 cut(s) 414, 2904
Eco47I GGWCC 5 cut(s) 280, 321, 3299, 3424, 3469
Eco52I CGGCCG 4 cut(s) 25, 46, 73, 204
Eco53kI GAGCTC 3 cut(s) 2325, 2912, 3292
Eco57I CTGAAG 5 cut(s) 1737, 1960, 2521, 2740, 3497
Eco88I CYCGRG 3 cut(s) 411, 1464, 1901
Eco91I GGTNACC 1 cut(s) 419
EcoICRI GAGCTC 3 cut(s) 2325, 2912, 3292
EcoNI CCTNNNNNAGG 2 cut(s) 952, 2259
EcoO109I RGGNCCY 4 cut(s) 321, 2098, 2099, 3424
EcoO65I GGTNACC 1 cut(s) 419
EcoRII CCWGG 4 cut(s) 175, 282, 1159, 1180
EcoT14I CCWWGG 8 cut(s) 313, 900, 1053, 1348, 2247, 2299, 2424, 2460
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 6 cut(s) 1695, 2102, 2327, 2749, 2914, 3294
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 8 cut(s) 313, 900, 1053, 1348, 2247, 2299, 2424, 2460
Esp3I CGTCTC 1 cut(s) 235
FaqI GGGAC 2 cut(s) 334, 3312
FauI CCCGC 3 cut(s) 121, 335, 2779
FbaI TGATCA 3 cut(s) 261, 1279, 2230
FblI GTMKAC 4 cut(s) 793, 818, 1938, 2305
FriOI GRGCYC 6 cut(s) 1695, 2102, 2327, 2749, 2914, 3294
GlaI GCGC 6 cut(s) 43, 302, 500, 518, 639, 2966
HaeII RGCGCY 1 cut(s) 45
HgaI GACGC 1 cut(s) 292
HhaI GCGC 6 cut(s) 44, 303, 501, 519, 640, 2967
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 6 cut(s) 42, 301, 499, 517, 638, 2965
HinP1I GCGC 6 cut(s) 42, 301, 499, 517, 638, 2965
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 1 cut(s) 1198
HphI GGTGA 8 cut(s) 431, 467, 798, 1410, 1445, 2498, 2802, 3172
Hpy99I CGWCG 2 cut(s) 308, 820
HpyCH4IV ACGT 2 cut(s) 445, 2490
HpySE526I ACGT 2 cut(s) 445, 2490
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 6 cut(s) 42, 301, 499, 517, 638, 2965
KasI GGCGCC 1 cut(s) 41
KflI GGGWCCC 1 cut(s) 321
Kpn2I TCCGGA 2 cut(s) 1532, 2749
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 3 cut(s) 261, 1279, 2230
KspI CCGCGG 2 cut(s) 117, 198
LguI GCTCTTC 1 cut(s) 2540
LmnI GCTCC 9 cut(s) 53, 59, 107, 146, 1859, 2257, 2567, 2752, 3374
Lsp1109I GCAGC 3 cut(s) 977, 1274, 1708
LweI GCATC 6 cut(s) 339, 845, 1789, 1924, 3080, 3158
MabI ACCWGGT 1 cut(s) 282
MaeII ACGT 2 cut(s) 445, 2490
MbiI CCGCTC 1 cut(s) 102
MfeI CAATTG 1 cut(s) 1803
MflI RGATCY 2 cut(s) 2576, 3381
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 7 cut(s) 862, 1133, 1249, 2070, 2210, 2459, 3092
MmeI TCCRAC 2 cut(s) 168, 1351
Mph1103I ATGCAT 1 cut(s) 582
MroI TCCGGA 2 cut(s) 1532, 2749
MroNI GCCGGC 1 cut(s) 44
MroXI GAANNNNTTC 6 cut(s) 392, 2343, 2698, 3187, 3232, 3404
MslI CAYNNNNRTG 4 cut(s) 1331, 1359, 2334, 2955
MspA1I CMGCKG 3 cut(s) 116, 197, 3475
MspCI CTTAAG 2 cut(s) 1133, 3560
MspR9I CCNGG 7 cut(s) 50, 177, 203, 284, 763, 1161, 1182
MunI CAATTG 1 cut(s) 1803
Mva1269I GAATGC 2 cut(s) 855, 1388
MvaI CCWGG 4 cut(s) 177, 284, 1161, 1182
MvnI CGCG 3 cut(s) 116, 197, 303
NaeI GCCGGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 3 cut(s) 50, 203, 763
NgoMIV GCCGGC 1 cut(s) 44
NmeAIII GCCGAG 4 cut(s) 51, 101, 114, 2574
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 2 cut(s) 580, 1910
PaeI GCATGC 1 cut(s) 580
PagI TCATGA 2 cut(s) 1918, 3541
PceI AGGCCT 2 cut(s) 1288, 1759
PciSI GCTCTTC 1 cut(s) 2540
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 2 cut(s) 855, 1388
PdiI GCCGGC 1 cut(s) 46
PdmI GAANNNNTTC 6 cut(s) 392, 2343, 2698, 3187, 3232, 3404
PflFI GACNNNGTC 1 cut(s) 284
PleI GAGTC 7 cut(s) 862, 1132, 1249, 2070, 2209, 2459, 3092
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 7 cut(s) 862, 1132, 1249, 2070, 2209, 2459, 3092
PpuMI RGGWCCY 2 cut(s) 321, 3424
PsiI TTATAA 2 cut(s) 2094, 3459
Psp124BI GAGCTC 3 cut(s) 2327, 2914, 3294
Psp5II RGGWCCY 2 cut(s) 321, 3424
Psp6I CCWGG 4 cut(s) 175, 282, 1159, 1180
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 4 cut(s) 175, 282, 1159, 1180
PspOMI GGGCCC 1 cut(s) 2098
PspPI GGNCC 9 cut(s) 199, 280, 321, 2098, 2099, 2296, 3299, 3424, 3469
PspPPI RGGWCCY 2 cut(s) 321, 3424
PstI CTGCAG 1 cut(s) 1264
PstNI CAGNNNCTG 1 cut(s) 2183
PsuI RGATCY 2 cut(s) 2576, 3381
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 3475
RsaI GTAC 4 cut(s) 5, 2312, 2457, 3180
RsaNI GTAC 4 cut(s) 4, 2311, 2456, 3179
RseI CAYNNNNRTG 4 cut(s) 1331, 1359, 2334, 2955
SacI GAGCTC 3 cut(s) 2327, 2914, 3294
SacII CCGCGG 2 cut(s) 117, 198
SalI GTCGAC 1 cut(s) 817
SapI GCTCTTC 1 cut(s) 2540
Sau96I GGNCC 9 cut(s) 199, 280, 321, 2098, 2099, 2296, 3299, 3424, 3469
ScaI AGTACT 1 cut(s) 2312
SchI GAGTC 7 cut(s) 862, 1133, 1249, 2070, 2210, 2459, 3092
ScrFI CCNGG 7 cut(s) 50, 177, 203, 284, 763, 1161, 1182
SexAI ACCWGGT 1 cut(s) 282
SfaNI GCATC 6 cut(s) 339, 845, 1789, 1924, 3080, 3158
SfcI CTRYAG 7 cut(s) 1260, 1365, 1382, 1959, 2306, 2655, 3438
SfoI GGCGCC 1 cut(s) 43
Sfr303I CCGCGG 2 cut(s) 117, 198
SgrBI CCGCGG 2 cut(s) 117, 198
SinI GGWCC 5 cut(s) 280, 321, 3299, 3424, 3469
SmiI ATTTAAAT 1 cut(s) 757
SmiMI CAYNNNNRTG 4 cut(s) 1331, 1359, 2334, 2955
SmlI CTYRAG 7 cut(s) 726, 1133, 1293, 2172, 3293, 3518, 3560
SmoI CTYRAG 7 cut(s) 726, 1133, 1293, 2172, 3293, 3518, 3560
SpeI ACTAGT 1 cut(s) 959
SphI GCATGC 1 cut(s) 580
SseBI AGGCCT 2 cut(s) 1288, 1759
SspDI GGCGCC 1 cut(s) 41
SspI AATATT 2 cut(s) 859, 3528
SstI GAGCTC 3 cut(s) 2327, 2914, 3294
StuI AGGCCT 2 cut(s) 1288, 1759
StyD4I CCNGG 7 cut(s) 48, 175, 201, 282, 761, 1159, 1180
StyI CCWWGG 8 cut(s) 313, 900, 1053, 1348, 2247, 2299, 2424, 2460
SwaI ATTTAAAT 1 cut(s) 757
TaiI ACGT 2 cut(s) 448, 2493
TaqI TCGA 7 cut(s) 154, 288, 306, 818, 997, 1122, 3503
TatI WGTACW 1 cut(s) 2310
TauI GCSGC 9 cut(s) 12, 39, 42, 65, 97, 119, 141, 197, 200
TseI GCWGC 3 cut(s) 965, 1262, 1721
TspGWI ACGGA 3 cut(s) 604, 804, 2403
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 2 cut(s) 1133, 3560
VneI GTGCAC 1 cut(s) 2238
VpaK11BI GGWCC 5 cut(s) 280, 321, 3299, 3424, 3469
XagI CCTNNNNNAGG 2 cut(s) 952, 2259
XapI RAATTY 5 cut(s) 335, 673, 2419, 2698, 3431
XceI RCATGY 2 cut(s) 580, 1910
XmiI GTMKAC 4 cut(s) 793, 818, 1938, 2305
XmnI GAANNNNTTC 6 cut(s) 392, 2343, 2698, 3187, 3232, 3404
ZrmI AGTACT 1 cut(s) 2312
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.