Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21290 AT3G21290 |
| fragaria_vesca | FvH4_6g32970 FvH4_6g32970 FvH4_6g32970 FvH4_6g32970 FvH4_6g32970 |
| malus_domestica | MD09G1196000.v1.1 MD17G1176700.v1.1 |
| prunus_persica | Prupe.3G052500_v2.0.a1 Prupe.3G052500_v2.0.a1 Prupe.3G052500_v2.0.a1 |
| pyrus_communis | pycom09g11310 pycom09g11320 pycom17g18570 |
| rosa_chinensis | RchiOBHm_Chr2g0142521 |
| rosa_laevigata | RLG00000019962 |
| rosa_multiflora | Rmu_sc0007525.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00102560 Rroxscaffold_5G00345520 |
| rosa_rugosa | Rorug02G0373400 Rorug02G0373500 Rorug02G0373500 |
| rosa_samantha | Rh2AG424800 Rh2BG434700 Rh2CG411500 Rh2DG444700 |
| rosa_wichuraiana | Rw2G034850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3618 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2021, 3743 |
| Acc36I | ACCTGC | 3 cut(s) | 792, 949, 2938 |
| AccB1I | GGYRCC | 2 cut(s) | 274, 3123 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1990 |
| AccBSI | CCGCTC | 1 cut(s) | 105 |
| AccI | GTMKAC | 2 cut(s) | 1995, 3184 |
| AccII | CGCG | 2 cut(s) | 303, 412 |
| AclWI | GGATC | 3 cut(s) | 1139, 2405, 3535 |
| AcoI | YGGCCR | 6 cut(s) | 25, 49, 76, 235, 285, 2455 |
| AcsI | RAATTY | 9 cut(s) | 335, 416, 679, 963, 1832, 1886, 2516, 2575, 2944 |
| AcuI | CTGAAG | 6 cut(s) | 1500, 2020, 2877, 3384, 3473, 3656 |
| AcyI | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| AfaI | GTAC | 6 cut(s) | 5, 806, 912, 979, 3339, 3482 |
| AflII | CTTAAG | 2 cut(s) | 1154, 3719 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AhlI | ACTAGT | 1 cut(s) | 926 |
| AjiI | CACGTC | 1 cut(s) | 183 |
| AjnI | CCWGG | 5 cut(s) | 1180, 1201, 1603, 1744, 3624 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 203, 235, 2332, 2364 |
| Alw21I | GWGCWC | 6 cut(s) | 850, 953, 1321, 1974, 2480, 2891 |
| Alw26I | GTCTC | 7 cut(s) | 1841, 2223, 2263, 2335, 3063, 3658, 3751 |
| AlwI | GGATC | 3 cut(s) | 1139, 2405, 3535 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 1933 |
| ApaI | GGGCCC | 1 cut(s) | 325 |
| ApeKI | GCWGC | 8 cut(s) | 188, 191, 197, 517, 650, 3242, 3250, 3631 |
| ApoI | RAATTY | 9 cut(s) | 335, 416, 679, 963, 1832, 1886, 2516, 2575, 2944 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1988, 2020 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 877, 1365, 2464, 2857, 3346, 3563 |
| AspLEI | GCGC | 5 cut(s) | 202, 277, 504, 579, 3126 |
| AspS9I | GGNCC | 7 cut(s) | 173, 310, 321, 322, 341, 2735, 3458 |
| AsuC2I | CCSGG | 1 cut(s) | 24 |
| AsuII | TTCGAA | 1 cut(s) | 881 |
| AvaII | GGWCC | 3 cut(s) | 341, 2735, 3458 |
| AxyI | CCTNAGG | 2 cut(s) | 1074, 2820 |
| BaeGI | GKGCMC | 1 cut(s) | 325 |
| BanI | GGYRCC | 2 cut(s) | 274, 3123 |
| BanII | GRGCYC | 5 cut(s) | 325, 953, 1469, 1974, 2480 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 788, 820, 894, 926 |
| BauI | CACGAG | 1 cut(s) | 3099 |
| BbsI | GAAGAC | 2 cut(s) | 1886, 3443 |
| Bbv12I | GWGCWC | 6 cut(s) | 850, 953, 1321, 1974, 2480, 2891 |
| BbvI | GCAGC | 8 cut(s) | 178, 184, 200, 529, 637, 3229, 3262, 3643 |
| BccI | CCATC | 6 cut(s) | 377, 832, 859, 1778, 3197, 3313 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2749, 2783, 3055, 3089 |
| BciT130I | CCWGG | 5 cut(s) | 1182, 1203, 1605, 1746, 3626 |
| BciVI | GTATCC | 1 cut(s) | 2603 |
| BclI | TGATCA | 3 cut(s) | 261, 1300, 2383 |
| BcnI | CCSGG | 1 cut(s) | 24 |
| BcoDI | GTCTC | 7 cut(s) | 1841, 2223, 2263, 2335, 3063, 3658, 3751 |
| BcuI | ACTAGT | 1 cut(s) | 926 |
| BfaI | CTAG | 9 cut(s) | 479, 927, 1569, 2994, 3143, 3162, 3272, 3545, 3575 |
| BfmI | CTRYAG | 6 cut(s) | 984, 1029, 1893, 2019, 2931, 3597 |
| BfoI | RGCGCY | 2 cut(s) | 278, 3127 |
| BfrI | CTTAAG | 2 cut(s) | 1154, 3719 |
| BfuAI | ACCTGC | 3 cut(s) | 792, 949, 2938 |
| BfuI | GTATCC | 1 cut(s) | 2603 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 33 |
| BglII | AGATCT | 1 cut(s) | 3145 |
| BlpI | GCTNAGC | 2 cut(s) | 573, 3246 |
| Bme1390I | CCNGG | 6 cut(s) | 24, 1182, 1203, 1605, 1746, 3626 |
| Bme18I | GGWCC | 3 cut(s) | 341, 2735, 3458 |
| BmgBI | CACGTC | 1 cut(s) | 183 |
| BmgT120I | GGNCC | 7 cut(s) | 173, 310, 321, 322, 341, 2735, 3458 |
| BmrFI | CCNGG | 6 cut(s) | 24, 1182, 1203, 1605, 1746, 3626 |
| BmrI | ACTGGG | 1 cut(s) | 2911 |
| BmsI | GCATC | 4 cut(s) | 339, 1636, 1658, 3317 |
| BmuI | ACTGGG | 1 cut(s) | 2911 |
| BpiI | GAAGAC | 2 cut(s) | 1886, 3443 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2462, 2494, 2464, 2496 |
| BpmI | CTGGAG | 2 cut(s) | 1164, 3198 |
| Bpu10I | CCTNAGC | 3 cut(s) | 834, 1959, 3447 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 573, 3246 |
| Bpu14I | TTCGAA | 1 cut(s) | 881 |
| BpuEI | CTTGAG | 3 cut(s) | 717, 1470, 2247 |
| BpuMI | CCSGG | 1 cut(s) | 24 |
| BsaAI | YACGTR | 1 cut(s) | 3493 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1418, 2388 |
| BsaHI | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| BsaI | GGTCTC | 1 cut(s) | 3063 |
| BsaWI | WCCGGW | 2 cut(s) | 1508, 1547 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 92, 122, 1609, 1639, 2332, 2362 |
| Bse118I | RCCGGY | 2 cut(s) | 233, 1279 |
| Bse1I | ACTGG | 4 cut(s) | 775, 874, 1500, 2906 |
| Bse21I | CCTNAGG | 2 cut(s) | 1074, 2820 |
| Bse3DI | GCAATG | 2 cut(s) | 373, 3373 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1418, 2388 |
| BseBI | CCWGG | 5 cut(s) | 1182, 1203, 1605, 1746, 3626 |
| BseGI | GGATG | 9 cut(s) | 388, 497, 1086, 1687, 2035, 2548, 3208, 3308, 3621 |
| BseJI | GATNNNNATC | 2 cut(s) | 1418, 2388 |
| BseMI | GCAATG | 2 cut(s) | 373, 3373 |
| BseNI | ACTGG | 4 cut(s) | 775, 874, 1500, 2906 |
| BseRI | GAGGAG | 3 cut(s) | 69, 97, 2488 |
| BseSI | GKGCMC | 1 cut(s) | 325 |
| BseX3I | CGGCCG | 1 cut(s) | 25 |
| BseXI | GCAGC | 8 cut(s) | 178, 184, 200, 529, 637, 3229, 3262, 3643 |
| BsgI | GTGCAG | 4 cut(s) | 536, 918, 1817, 2748 |
| Bsh1236I | CGCG | 2 cut(s) | 303, 412 |
| Bsh1285I | CGRYCG | 1 cut(s) | 28 |
| BshNI | GGYRCC | 2 cut(s) | 274, 3123 |
| BsiEI | CGRYCG | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 6 cut(s) | 850, 953, 1321, 1974, 2480, 2891 |
| BsiSI | CCGG | 6 cut(s) | 24, 60, 234, 1280, 1509, 1548 |
| BslFI | GGGAC | 4 cut(s) | 1386, 1751, 2027, 3471 |
| BsmAI | GTCTC | 7 cut(s) | 1841, 2223, 2263, 2335, 3063, 3658, 3751 |
| BsmFI | GGGAC | 4 cut(s) | 1386, 1751, 2027, 3471 |
| BsmI | GAATGC | 2 cut(s) | 1387, 1435 |
| Bso31I | GGTCTC | 1 cut(s) | 3063 |
| Bsp119I | TTCGAA | 1 cut(s) | 881 |
| Bsp120I | GGGCCC | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 8 cut(s) | 325, 850, 953, 1321, 1469, 1974, 2480, 2891 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 573, 3246 |
| Bsp19I | CCATGG | 1 cut(s) | 1769 |
| BspFNI | CGCG | 2 cut(s) | 303, 412 |
| BspHI | TCATGA | 1 cut(s) | 3700 |
| BspMAI | CTGCAG | 1 cut(s) | 2935 |
| BspMI | ACCTGC | 3 cut(s) | 792, 949, 2938 |
| BspPI | GGATC | 3 cut(s) | 1139, 2405, 3535 |
| BspQI | GCTCTTC | 2 cut(s) | 207, 438 |
| BspT104I | TTCGAA | 1 cut(s) | 881 |
| BspT107I | GGYRCC | 2 cut(s) | 274, 3123 |
| BspTI | CTTAAG | 2 cut(s) | 1154, 3719 |
| BspTNI | GGTCTC | 1 cut(s) | 3063 |
| BsrBI | CCGCTC | 1 cut(s) | 105 |
| BsrDI | GCAATG | 2 cut(s) | 373, 3373 |
| BsrFI | RCCGGY | 2 cut(s) | 233, 1279 |
| BsrI | ACTGG | 4 cut(s) | 775, 874, 1500, 2906 |
| BssAI | RCCGGY | 2 cut(s) | 233, 1279 |
| BssNI | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| BssSI | CACGAG | 1 cut(s) | 3099 |
| BssT1I | CCWWGG | 3 cut(s) | 313, 1769, 2580 |
| Bst2BI | CACGAG | 1 cut(s) | 3099 |
| Bst2UI | CCWGG | 5 cut(s) | 1182, 1203, 1605, 1746, 3626 |
| Bst6I | CTCTTC | 6 cut(s) | 207, 285, 438, 825, 878, 1326 |
| BstACI | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| BstAFI | CTTAAG | 2 cut(s) | 1154, 3719 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1729 |
| BstBAI | YACGTR | 1 cut(s) | 3493 |
| BstBI | TTCGAA | 1 cut(s) | 881 |
| BstC8I | GCNNGC | 7 cut(s) | 204, 235, 581, 1281, 1790, 2320, 3357 |
| BstDSI | CCRYGG | 2 cut(s) | 207, 1769 |
| BstEII | GGTNACC | 1 cut(s) | 422 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3117 |
| BstF5I | GGATG | 9 cut(s) | 388, 497, 1086, 1687, 2035, 2548, 3208, 3308, 3621 |
| BstFNI | CGCG | 2 cut(s) | 303, 412 |
| BstH2I | RGCGCY | 2 cut(s) | 278, 3127 |
| BstHHI | GCGC | 5 cut(s) | 202, 277, 504, 579, 3126 |
| BstMAI | GTCTC | 7 cut(s) | 1841, 2223, 2263, 2335, 3063, 3658, 3751 |
| BstMCI | CGRYCG | 1 cut(s) | 28 |
| BstNI | CCWGG | 5 cut(s) | 1182, 1203, 1605, 1746, 3626 |
| BstNSI | RCATGY | 1 cut(s) | 2322 |
| BstPI | GGTNACC | 1 cut(s) | 422 |
| BstSCI | CCNGG | 6 cut(s) | 22, 1180, 1201, 1603, 1744, 3624 |
| BstSFI | CTRYAG | 6 cut(s) | 984, 1029, 1893, 2019, 2931, 3597 |
| BstSLI | GKGCMC | 1 cut(s) | 325 |
| BstUI | CGCG | 2 cut(s) | 303, 412 |
| BstV1I | GCAGC | 8 cut(s) | 178, 184, 200, 529, 637, 3229, 3262, 3643 |
| BstV2I | GAAGAC | 2 cut(s) | 1886, 3443 |
| BstX2I | RGATCY | 2 cut(s) | 3145, 3540 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2639, 3319 |
| BstYI | RGATCY | 2 cut(s) | 3145, 3540 |
| BstZI | CGGCCG | 1 cut(s) | 25 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1074, 2820 |
| BsuI | GTATCC | 1 cut(s) | 2603 |
| BtgI | CCRYGG | 2 cut(s) | 207, 1769 |
| BtgZI | GCGATG | 1 cut(s) | 1659 |
| BtrI | CACGTC | 1 cut(s) | 183 |
| BtsCI | GGATG | 9 cut(s) | 388, 497, 1086, 1687, 2035, 2548, 3208, 3308, 3621 |
| BtsI | GCAGTG | 1 cut(s) | 1546 |
| BveI | ACCTGC | 3 cut(s) | 792, 949, 2938 |
| Cac8I | GCNNGC | 7 cut(s) | 204, 235, 581, 1281, 1790, 2320, 3357 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 1933 |
| CciI | TCATGA | 1 cut(s) | 3700 |
| CfoI | GCGC | 5 cut(s) | 202, 277, 504, 579, 3126 |
| Cfr10I | RCCGGY | 2 cut(s) | 233, 1279 |
| Cfr13I | GGNCC | 7 cut(s) | 173, 310, 321, 322, 341, 2735, 3458 |
| CseI | GACGC | 2 cut(s) | 292, 1285 |
| Csp6I | GTAC | 6 cut(s) | 4, 805, 911, 978, 3338, 3481 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2569, 2604, 2650, 2685 |
| CviQI | GTAC | 6 cut(s) | 4, 805, 911, 978, 3338, 3481 |
| DinI | GGCGCC | 2 cut(s) | 276, 3125 |
| DraI | TTTAAA | 3 cut(s) | 709, 2359, 2979 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2021, 3743 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2021, 3743 |
| EaeI | YGGCCR | 6 cut(s) | 25, 49, 76, 235, 285, 2455 |
| EagI | CGGCCG | 1 cut(s) | 25 |
| Eam1104I | CTCTTC | 6 cut(s) | 207, 285, 438, 825, 878, 1326 |
| EarI | CTCTTC | 6 cut(s) | 207, 285, 438, 825, 878, 1326 |
| Ecl136II | GAGCTC | 3 cut(s) | 951, 1972, 2478 |
| EclXI | CGGCCG | 1 cut(s) | 25 |
| Eco130I | CCWWGG | 3 cut(s) | 313, 1769, 2580 |
| Eco147I | AGGCCT | 1 cut(s) | 1792 |
| Eco24I | GRGCYC | 5 cut(s) | 325, 953, 1469, 1974, 2480 |
| Eco31I | GGTCTC | 1 cut(s) | 3063 |
| Eco32I | GATATC | 2 cut(s) | 1190, 2070 |
| Eco47I | GGWCC | 3 cut(s) | 341, 2735, 3458 |
| Eco52I | CGGCCG | 1 cut(s) | 25 |
| Eco53kI | GAGCTC | 3 cut(s) | 951, 1972, 2478 |
| Eco57I | CTGAAG | 6 cut(s) | 1500, 2020, 2877, 3384, 3473, 3656 |
| Eco81I | CCTNAGG | 2 cut(s) | 1074, 2820 |
| Eco91I | GGTNACC | 1 cut(s) | 422 |
| EcoICRI | GAGCTC | 3 cut(s) | 951, 1972, 2478 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3117 |
| EcoO109I | RGGNCCY | 3 cut(s) | 173, 321, 322 |
| EcoO65I | GGTNACC | 1 cut(s) | 422 |
| EcoRII | CCWGG | 5 cut(s) | 1180, 1201, 1603, 1744, 3624 |
| EcoRV | GATATC | 2 cut(s) | 1190, 2070 |
| EcoT14I | CCWWGG | 3 cut(s) | 313, 1769, 2580 |
| EcoT22I | ATGCAT | 3 cut(s) | 1411, 1651, 2490 |
| EcoT38I | GRGCYC | 5 cut(s) | 325, 953, 1469, 1974, 2480 |
| EgeI | GGCGCC | 2 cut(s) | 276, 3125 |
| EheI | GGCGCC | 2 cut(s) | 276, 3125 |
| ErhI | CCWWGG | 3 cut(s) | 313, 1769, 2580 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1812, 1844, 2018, 2050, 3379, 3411 |
| FaqI | GGGAC | 4 cut(s) | 1386, 1751, 2027, 3471 |
| FauI | CCCGC | 5 cut(s) | 184, 335, 405, 599, 1607 |
| FauNDI | CATATG | 1 cut(s) | 2484 |
| FbaI | TGATCA | 3 cut(s) | 261, 1300, 2383 |
| FblI | GTMKAC | 2 cut(s) | 1995, 3184 |
| FokI | GGATG | 9 cut(s) | 395, 504, 1093, 1694, 2042, 2555, 3215, 3295, 3608 |
| FriOI | GRGCYC | 5 cut(s) | 325, 953, 1469, 1974, 2480 |
| FspBI | CTAG | 9 cut(s) | 479, 927, 1569, 2994, 3143, 3162, 3272, 3545, 3575 |
| GlaI | GCGC | 5 cut(s) | 201, 276, 503, 578, 3125 |
| GsuI | CTGGAG | 2 cut(s) | 1164, 3198 |
| HaeII | RGCGCY | 2 cut(s) | 278, 3127 |
| HapII | CCGG | 6 cut(s) | 24, 60, 234, 1280, 1509, 1548 |
| HgaI | GACGC | 2 cut(s) | 292, 1285 |
| HhaI | GCGC | 5 cut(s) | 202, 277, 504, 579, 3126 |
| Hin1I | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| Hin6I | GCGC | 5 cut(s) | 200, 275, 502, 577, 3124 |
| HinP1I | GCGC | 5 cut(s) | 200, 275, 502, 577, 3124 |
| HincII | GTYRAC | 1 cut(s) | 537 |
| HindII | GTYRAC | 1 cut(s) | 537 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HpaII | CCGG | 6 cut(s) | 24, 60, 234, 1280, 1509, 1548 |
| Hpy99I | CGWCG | 1 cut(s) | 308 |
| HpyCH4IV | ACGT | 2 cut(s) | 182, 3492 |
| HpySE526I | ACGT | 2 cut(s) | 182, 3492 |
| Hsp92I | GRCGYC | 3 cut(s) | 275, 1277, 3124 |
| HspAI | GCGC | 5 cut(s) | 200, 275, 502, 577, 3124 |
| KasI | GGCGCC | 2 cut(s) | 274, 3123 |
| KroI | GCCGGC | 2 cut(s) | 233, 1279 |
| KroNI | GCCGGC | 2 cut(s) | 235, 1281 |
| Ksp22I | TGATCA | 3 cut(s) | 261, 1300, 2383 |
| LguI | GCTCTTC | 2 cut(s) | 207, 438 |
| Lsp1109I | GCAGC | 8 cut(s) | 178, 184, 200, 529, 637, 3229, 3262, 3643 |
| LweI | GCATC | 4 cut(s) | 339, 1636, 1658, 3317 |
| MaeI | CTAG | 9 cut(s) | 479, 927, 1569, 2994, 3143, 3162, 3272, 3545, 3575 |
| MaeII | ACGT | 2 cut(s) | 182, 3492 |
| MbiI | CCGCTC | 1 cut(s) | 105 |
| MfeI | CAATTG | 1 cut(s) | 1389 |
| MflI | RGATCY | 2 cut(s) | 3145, 3540 |
| MhlI | GDGCHC | 8 cut(s) | 325, 850, 953, 1321, 1469, 1974, 2480, 2891 |
| MluI | ACGCGT | 1 cut(s) | 301 |
| Mly113I | GGCGCC | 2 cut(s) | 275, 3124 |
| MlyI | GAGTC | 5 cut(s) | 542, 895, 2223, 2615, 3251 |
| MmeI | TCCRAC | 4 cut(s) | 174, 1335, 1494, 2351 |
| Mph1103I | ATGCAT | 3 cut(s) | 1411, 1651, 2490 |
| MroNI | GCCGGC | 2 cut(s) | 233, 1279 |
| MroXI | GAANNNNTTC | 6 cut(s) | 877, 1365, 2464, 2857, 3346, 3563 |
| MslI | CAYNNNNRTG | 5 cut(s) | 269, 403, 894, 2112, 2487 |
| MspA1I | CMGCKG | 3 cut(s) | 191, 197, 3634 |
| MspCI | CTTAAG | 2 cut(s) | 1154, 3719 |
| MspI | CCGG | 6 cut(s) | 24, 60, 234, 1280, 1509, 1548 |
| MspR9I | CCNGG | 6 cut(s) | 24, 1182, 1203, 1605, 1746, 3626 |
| MssI | GTTTAAAC | 1 cut(s) | 2359 |
| MunI | CAATTG | 1 cut(s) | 1389 |
| Mva1269I | GAATGC | 2 cut(s) | 1387, 1435 |
| MvaI | CCWGG | 5 cut(s) | 1182, 1203, 1605, 1746, 3626 |
| MvnI | CGCG | 2 cut(s) | 303, 412 |
| NaeI | GCCGGC | 2 cut(s) | 235, 1281 |
| NarI | GGCGCC | 2 cut(s) | 275, 3124 |
| NciI | CCSGG | 1 cut(s) | 24 |
| NcoI | CCATGG | 1 cut(s) | 1769 |
| NdeI | CATATG | 1 cut(s) | 2484 |
| NgoMIV | GCCGGC | 2 cut(s) | 233, 1279 |
| NmeAIII | GCCGAG | 4 cut(s) | 53, 77, 104, 2464 |
| NmuCI | GTSAC | 7 cut(s) | 422, 431, 922, 1514, 1520, 1532, 1553 |
| NsiI | ATGCAT | 3 cut(s) | 1411, 1651, 2490 |
| NspI | RCATGY | 1 cut(s) | 2322 |
| NspV | TTCGAA | 1 cut(s) | 881 |
| PaeI | GCATGC | 1 cut(s) | 2322 |
| PagI | TCATGA | 1 cut(s) | 3700 |
| PasI | CCCWGGG | 1 cut(s) | 1604 |
| PceI | AGGCCT | 1 cut(s) | 1792 |
| PciSI | GCTCTTC | 2 cut(s) | 207, 438 |
| PctI | GAATGC | 2 cut(s) | 1387, 1435 |
| PdiI | GCCGGC | 2 cut(s) | 235, 1281 |
| PdmI | GAANNNNTTC | 6 cut(s) | 877, 1365, 2464, 2857, 3346, 3563 |
| PflFI | GACNNNGTC | 1 cut(s) | 2255 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1990 |
| PleI | GAGTC | 5 cut(s) | 541, 894, 2223, 2615, 3251 |
| PluTI | GGCGCC | 2 cut(s) | 278, 3127 |
| PmeI | GTTTAAAC | 1 cut(s) | 2359 |
| PpsI | GAGTC | 5 cut(s) | 541, 894, 2223, 2615, 3251 |
| Ppu21I | YACGTR | 1 cut(s) | 3493 |
| PsiI | TTATAA | 1 cut(s) | 3618 |
| Psp124BI | GAGCTC | 3 cut(s) | 953, 1974, 2480 |
| Psp6I | CCWGG | 5 cut(s) | 1180, 1201, 1603, 1744, 3624 |
| PspEI | GGTNACC | 1 cut(s) | 422 |
| PspGI | CCWGG | 5 cut(s) | 1180, 1201, 1603, 1744, 3624 |
| PspOMI | GGGCCC | 1 cut(s) | 321 |
| PspPI | GGNCC | 7 cut(s) | 173, 310, 321, 322, 341, 2735, 3458 |
| PstI | CTGCAG | 1 cut(s) | 2935 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 1933 |
| PsuI | RGATCY | 2 cut(s) | 3145, 3540 |
| PsyI | GACNNNGTC | 1 cut(s) | 2255 |
| PvuII | CAGCTG | 2 cut(s) | 191, 3634 |
| RsaI | GTAC | 6 cut(s) | 5, 806, 912, 979, 3339, 3482 |
| RsaNI | GTAC | 6 cut(s) | 4, 805, 911, 978, 3338, 3481 |
| RseI | CAYNNNNRTG | 5 cut(s) | 269, 403, 894, 2112, 2487 |
| SacI | GAGCTC | 3 cut(s) | 953, 1974, 2480 |
| SapI | GCTCTTC | 2 cut(s) | 207, 438 |
| Sau96I | GGNCC | 7 cut(s) | 173, 310, 321, 322, 341, 2735, 3458 |
| SbfI | CCTGCAGG | 1 cut(s) | 2935 |
| SchI | GAGTC | 5 cut(s) | 542, 895, 2223, 2615, 3251 |
| ScrFI | CCNGG | 6 cut(s) | 24, 1182, 1203, 1605, 1746, 3626 |
| SdaI | CCTGCAGG | 1 cut(s) | 2935 |
| SduI | GDGCHC | 8 cut(s) | 325, 850, 953, 1321, 1469, 1974, 2480, 2891 |
| SfaNI | GCATC | 4 cut(s) | 339, 1636, 1658, 3317 |
| SfcI | CTRYAG | 6 cut(s) | 984, 1029, 1893, 2019, 2931, 3597 |
| SfoI | GGCGCC | 2 cut(s) | 276, 3125 |
| SfuI | TTCGAA | 1 cut(s) | 881 |
| SinI | GGWCC | 3 cut(s) | 341, 2735, 3458 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 269, 403, 894, 2112, 2487 |
| SmlI | CTYRAG | 5 cut(s) | 732, 1154, 1485, 2262, 3719 |
| SmoI | CTYRAG | 5 cut(s) | 732, 1154, 1485, 2262, 3719 |
| SpeI | ACTAGT | 1 cut(s) | 926 |
| SphI | GCATGC | 1 cut(s) | 2322 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2935 |
| SseBI | AGGCCT | 1 cut(s) | 1792 |
| SspDI | GGCGCC | 2 cut(s) | 274, 3123 |
| SspI | AATATT | 2 cut(s) | 877, 3687 |
| SspMI | CTAG | 9 cut(s) | 479, 927, 1569, 2994, 3143, 3162, 3272, 3545, 3575 |
| SstI | GAGCTC | 3 cut(s) | 953, 1974, 2480 |
| StuI | AGGCCT | 1 cut(s) | 1792 |
| StyD4I | CCNGG | 6 cut(s) | 22, 1180, 1201, 1603, 1744, 3624 |
| StyI | CCWWGG | 3 cut(s) | 313, 1769, 2580 |
| TaiI | ACGT | 2 cut(s) | 185, 3495 |
| TaqI | TCGA | 4 cut(s) | 306, 881, 1315, 2769 |
| TatI | WGTACW | 1 cut(s) | 3480 |
| TauI | GCSGC | 7 cut(s) | 39, 42, 45, 68, 126, 165, 197 |
| TseFI | GTSAC | 7 cut(s) | 422, 431, 922, 1514, 1520, 1532, 1553 |
| TseI | GCWGC | 8 cut(s) | 188, 191, 197, 517, 650, 3242, 3250, 3631 |
| Tsp45I | GTSAC | 7 cut(s) | 422, 431, 922, 1514, 1520, 1532, 1553 |
| TspGWI | ACGGA | 3 cut(s) | 21, 1006, 2748 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2255 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1990 |
| Vha464I | CTTAAG | 2 cut(s) | 1154, 3719 |
| VpaK11BI | GGWCC | 3 cut(s) | 341, 2735, 3458 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3117 |
| XapI | RAATTY | 9 cut(s) | 335, 416, 679, 963, 1832, 1886, 2516, 2575, 2944 |
| XceI | RCATGY | 1 cut(s) | 2322 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2689, 3319 |
| XmiI | GTMKAC | 2 cut(s) | 1995, 3184 |
| XmnI | GAANNNNTTC | 6 cut(s) | 877, 1365, 2464, 2857, 3346, 3563 |
| XspI | CTAG | 9 cut(s) | 479, 927, 1569, 2994, 3143, 3162, 3272, 3545, 3575 |
| Zsp2I | ATGCAT | 3 cut(s) | 1411, 1651, 2490 |