Rroxscaffold_2G00102560

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005746
Physical Location & Seq
Forward (+)
24785922 .. 24795922
10001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102560.1

Sequence Viewer

Length: 3522 bp
ATGTACGGCGGCTCATCCAAGCACGGCCGATTAGGCGGCGGCGCCGGCCGGGGAGCCGGAGCCGCCAAGCTCGGCCGAGCCTCCTTCCCTCCGCCGCACCGCAACTCCGCCGCCCCAGCAGCAGCCAACCGCCTCTCCCTCGGCGGCTCCAACCATCGAGGAGGCCATATTTGGGGTAGTTTGGTTATTGATGTGGGTGGGAAAGAGTTTAGATTTACATGGTCTCGGGATGGTGACCTCTGTGACATATATGAAGAACGTGAAACTGGTGAAGATGGAAATGGTTTGCTTGTTGAATCAGGATGTGCATGGCGCAAAGTGAATGTTCAGCGTATATTAGATGAGTCAACTAAGAATCATGTTAAGAGGCGGTCGGAGGAAGCTGAACGCTTGCACAAATCACGAAAAGCCATTGTGCTAGAACAGAATCCAGCCATGAAGAATCAACTAAAGCAATTTACTGCTGCCACGGCTAATAGTTCATGGAGGAATTTCAAACAGAAGAAAGAGCCTCCCTTTAAAAAGCAGAAAGTTGAACCACCTCAAGTTTCAGCTCCTCCAAAGTCTGCATATAAATCAGGGGTATCATCAGCAACTACTGCAAAGGGTAGACAGTCATCATCACCTCTTCCGTCTACACCTGAGAAGTCTGCATCTCCATTTGGAATGCTAAATATTTCAAAGACTCATACAAGTGCAGATGAAACTATACCCTCTAAAGTCATTATTAAGGACAAACCTGCTCCTAGCTTGGATAAAGAAACCTCAATCAGGACTAGTGCAGCATGTGAAACTGCTGGCAAAGGCAATGGTCGAGCTAAGCCAACAGATTTGCAGAGTTTGTTGATTACACTGCTCATGGAGAATCCCAAGGGGATGAGCTTAAAGGCTTTGGAGAAAGCTGTTGGAGATTCATTTCCTAACTCTGTGAAAAAAATTGAGCCCATTCTTAAGAAGATTGCAAATTCCCAAGCTCCAGGGAAGTATCTCTTGAAGCCAGGAGTGGAGTTAGAAAGCTTCAAGAAACCTTTGTTTGAATCTGGAAGTTCCCCAGAAGAGAACCTTCGCCGGACTCCTGCTACGGATAACGTCTGTGATCAAAGGCCTGCTCAAATACCAGAGTTTAAGGAGAAGGTTTCTTCCAGCGAAATGGAGGAACAGGGCCAGGGACAATTGAATGCTACAGTTGGAGAAGAACCACAGGTATTCCAAAAAATTGATAACCAACAGCAGTCACCTGATCTTTTTGGTGAAAAAAGGGCCTCTGACAACAGTGAAGCCCAAATAGGTAGTTCTAGTTCTAGTGAAAGTGGAAGTGACAGTGACAGTGAAAGTGACAGCAGTGATTCCGGAAGTGACAGTGGAAGTCCTAGCAGAAGTAAAAGCCCAAAAGGAAGTGGGAGTGGGAGTAGCAGCGATAGTGAAAGTGATGTGTCTTCTAATAGCAAGGAGGTTTCTGATGAGGATGTGAACATTATGAGTGATGATGATAAAGAGCCCAAACATCAAACACAAGCCTCTGAAGCTGCTTTGCCCATTCCATGGGAAACTCCTGATGGCAGGCCTGTGCAGAGTGGGAATGATGACAAGCCAGATGATCTTGAATCTGATGCAATTGATATTGAAACTGTGGAACAGGATACTGAATTGGCTGTTGTTAGTAACTCCGCTCCTAATAAATGTGATCAACCTGTTGATGAAACAAAACCTTCTTCACCTGAGCATGTTGAGCATCATGACAGCCAGATTCTTGTAGACAGTTTGTTTGGAAAGACTGCAGACAAGGATGACTTCAGGTATGAGCAGTCTGATAGCTCTGAGAGGATGACTAAAGGTAAATCCAAAAGAGGTTTGGAGGTAAAGCACTCTGATGAAAAATCTGAACGCAGAAAAAGGTCAAAAACGGAAAACTCACCACAACCTCCTGCTTCTGTGGGTAAGGGTGTTCAATTTTCAGAGGATTATCATAACTTGTCTCCTGATAGACTCATTGAAGGCTCTTATAAGGGCCCTGTATCTCAAACGCTGAATAAAGCTGATAGGGATGGGAATACTGAGTTTGGCTCTCAAAAGGGCTACAATCAAGCAGTTTCTGGAAGATATAGCTCGGAGTCTAAACAATTAAGTCGGAAGTCTTATGATCATAGTGCACAAGCAAAGGCTCCTGATCAAGGTGAAAGACCTGATAGATATTCCGAGAGCTTGGGCCATGGTCTGCAGTACTCTGAAAAGAGTTCTCATGTGCATGAAGGCTTTCCCCTGCGAAAAGATAATGTTCATAGTAGTAGTCAAAAGGACGGTTATGCTAATGAAAAGAAGGTTTCAAGAAATTCCAAGGAAGGTGGTGGCCGAGGCAAACAATCAGTGCCCTTGGACACCCACTACCAGAAACATGGTGACGTGGCTGGCAAAATCAAGGAAGATAGACAGGTTTCAAGTATGTTCTTCAGTTCTTCGCCAAAGGAAAACAGGAATGGAGCTGACAGATCCCCAGTTGTTAATGGTAGAGGTAGTAAACTCCAAAGAGAGGTTTCAGAATTGGAGTTGGGCGAACTTCGTGAGGTCGTGCCCGAGGAAACAACAGTTAAGAAGCAAGTTGAGAGAAAAAGTTCATTTAAGCAGTCAGAAAACAAACTGGGCACCAGGGATACCTGGGCTTCGGACTTCAGTAAATCAAAACCTGCAGGAAAGCCATCCTCACCGGATTTAAACTTGAAGTTCCCTAGTAATGCAGAAGGCTTAGTTAAAAAAAGGAACTACGAAGATCGTATTGAGGATTTAACGGGGTCTCAACAGAGAGCTCTGCAATCTCAGTCACTGCACCTTTCACGAGCAGATAATTCTGATGTGGGGCGCCCATTCAGCAGATCAGCAGATAACAGTAGTAAATCAACACAAAATGAAGTTGGGGGCAGACAAGGGATCAGTTTGGATGGCTATGGAGAAAGCAATAAGAAAGCACCTCCTAGGGCTTCTCAGCACCATGACTCTAAACGAGGGCCACTGTCCCACACCAATAATGAAAGTAAAAGACTTGCATCTAGCACGATGATGGAACAGACTGATGTACGAAAGGATTCATTGTTGGCAGAGGGCACTGACAGTGATAGAAAAAGAAGGGATTCTTCTTCTGATGAAAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCTGAGCTCAAGGGACCAATAAAAGATTTCTCTCAGTACAAGGAGTATGTGCAAGAATATCATGATAAGTATGATAGCTACTGCTCGTTGAACAAGATCTTAGAGAGTTACAGGAATGAGTTCCTAAAGCTAGGGAAGGACCTTGAATTTGCTTCGGGCACAGAGAGATATTATATCATCTTGGACCAGCTGAAGGAGTCCTATCGTCAGTGTGGATCGAGACATAAGAGGCTCAAAAAGATATTTGTGGTGCTTCATGAGGAACTAAAGATCAGGCTTTTTGTTTTTGATTTGCCTGACCTCCTTCGGCCTATCAGTGCTTTTAGGGCTCTTGATGTTTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1173

Amino Acids

129.17

Weight (kDa)

7.37

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1063 - 1148 1.2e-13 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2004
Acc36I ACCTGC 2 cut(s) 748, 2689
AccB1I GGYRCC 3 cut(s) 41, 2639, 2853
AccB7I CCANNNNNTGG 1 cut(s) 1542
AccBSI CCGCTC 1 cut(s) 1670
AccI GTMKAC 3 cut(s) 610, 635, 1755
AccIII TCCGGA 1 cut(s) 1349
AclWI GGATC 3 cut(s) 2481, 2930, 3397
AcoI YGGCCR 4 cut(s) 25, 46, 73, 2347
AcsI RAATTY 4 cut(s) 490, 964, 2329, 3320
AcuI CTGAAG 5 cut(s) 1542, 1777, 2431, 2650, 3386
AcyI GRCGYC 2 cut(s) 42, 2854
AfaI GTAC 4 cut(s) 5, 2222, 3069, 3212
AfiI CCNNNNNNNGG 6 cut(s) 172, 771, 1542, 2171, 2527, 3367
AflII CTTAAG 1 cut(s) 950
AhlI ACTAGT 1 cut(s) 776
AjiI CACGTC 1 cut(s) 2401
AjnI CCWGG 5 cut(s) 976, 997, 1164, 2642, 2651
Alw21I GWGCWC 3 cut(s) 2152, 2803, 3183
Alw26I GTCTC 4 cut(s) 228, 1980, 2793, 3388
Alw44I GTGCAC 1 cut(s) 2148
AlwI GGATC 3 cut(s) 2481, 2930, 3397
AlwNI CAGNNNCTG 2 cut(s) 2093, 2818
Ama87I CYCGRG 2 cut(s) 225, 2570
Aor13HI TCCGGA 1 cut(s) 1349
ApaI GGGCCC 1 cut(s) 2012
ApaLI GTGCAC 1 cut(s) 2148
ApeKI GCWGC 6 cut(s) 119, 122, 464, 782, 1413, 1526
ApoI RAATTY 4 cut(s) 490, 964, 2329, 3320
ArsI GACNNNNNNTTYG 4 cut(s) 1748, 1780, 3305, 3337
Asp700I GAANNNNTTC 5 cut(s) 2253, 2608, 3076, 3121, 3293
AspA2I CCTAGG 1 cut(s) 2966
AspLEI GCGC 3 cut(s) 44, 315, 2856
AspS9I GGNCC 9 cut(s) 1162, 1260, 2008, 2009, 2206, 2999, 3188, 3313, 3358
AsuC2I CCSGG 1 cut(s) 50
AvaI CYCGRG 2 cut(s) 225, 2570
AvaII GGWCC 3 cut(s) 3188, 3313, 3358
AvrII CCTAGG 1 cut(s) 2966
BaeGI GKGCMC 7 cut(s) 2012, 2152, 2370, 2571, 2642, 3098, 3335
BanI GGYRCC 3 cut(s) 41, 2639, 2853
BanII GRGCYC 6 cut(s) 945, 1500, 2012, 2803, 3183, 3505
BauI CACGAG 1 cut(s) 2829
BbsI GAAGAC 1 cut(s) 1428
Bbv12I GWGCWC 3 cut(s) 2152, 2803, 3183
BbvI GCAGC 6 cut(s) 131, 134, 451, 794, 1425, 1513
BccI CCATC 8 cut(s) 162, 224, 269, 1550, 2039, 2701, 2927, 3046
BceAI ACGGC 3 cut(s) 22, 40, 486
BciT130I CCWGG 5 cut(s) 978, 999, 1166, 2644, 2653
BciVI GTATCC 2 cut(s) 1633, 2641
BclI TGATCA 4 cut(s) 1096, 1684, 2140, 2167
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 4 cut(s) 228, 1980, 2793, 3388
BcuI ACTAGT 1 cut(s) 776
BfmI CTRYAG 4 cut(s) 1182, 1776, 2216, 2682
BfoI RGCGCY 2 cut(s) 45, 2857
BfrI CTTAAG 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 748, 2689
BfuI GTATCC 2 cut(s) 1633, 2641
BglI GCCNNNNNGGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 3270
BlnI CCTAGG 1 cut(s) 2966
BlpI GCTNAGC 1 cut(s) 819
BmcAI AGTACT 1 cut(s) 2222
Bme1390I CCNGG 6 cut(s) 50, 978, 999, 1166, 2644, 2653
Bme18I GGWCC 3 cut(s) 3188, 3313, 3358
BmeT110I CYCGRG 2 cut(s) 225, 2570
BmgBI CACGTC 1 cut(s) 2401
BmgT120I GGNCC 9 cut(s) 1162, 1260, 2008, 2009, 2206, 2999, 3188, 3313, 3358
BmiI GGNNCC 9 cut(s) 43, 55, 61, 148, 2010, 2163, 2641, 2855, 3189
BmrFI CCNGG 6 cut(s) 50, 978, 999, 1166, 2644, 2653
BmrI ACTGGG 2 cut(s) 2486, 2645
BmsI GCATC 4 cut(s) 662, 1600, 1741, 3047
BmuI ACTGGG 2 cut(s) 2486, 2645
BpiI GAAGAC 1 cut(s) 1428
BplI GAGNNNNNCTC 2 cut(s) 2048, 2080
BpmI CTGGAG 1 cut(s) 960
Bpu10I CCTNAGC 2 cut(s) 1719, 3177
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 528, 3167
BpuMI CCSGG 1 cut(s) 50
BsaHI GRCGYC 2 cut(s) 42, 2854
BsaI GGTCTC 2 cut(s) 228, 2793
BsaWI WCCGGW 2 cut(s) 1349, 2701
BsaXI ACNNNNNCTCC 6 cut(s) 89, 119, 119, 149, 1393, 1423
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 771, 1542, 2171, 2527, 3367
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 271, 2492, 2640
Bse3DI GCAATG 1 cut(s) 814
BseAI TCCGGA 1 cut(s) 1349
BseBI CCWGG 5 cut(s) 978, 999, 1166, 2644, 2653
BseLI CCNNNNNNNGG 6 cut(s) 172, 771, 1542, 2171, 2527, 3367
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 8 cut(s) 633, 1710, 1809, 2046, 2825, 2990, 3168, 3221
BseNI ACTGG 3 cut(s) 271, 2492, 2640
BseRI GAGGAG 2 cut(s) 174, 546
BseSI GKGCMC 7 cut(s) 2012, 2152, 2370, 2571, 2642, 3098, 3335
BseX3I CGGCCG 3 cut(s) 25, 46, 73
BseXI GCAGC 6 cut(s) 131, 134, 451, 794, 1425, 1513
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 4 cut(s) 717, 801, 1589, 2804
Bsh1285I CGRYCG 4 cut(s) 28, 49, 76, 374
BshNI GGYRCC 3 cut(s) 41, 2639, 2853
BsiEI CGRYCG 4 cut(s) 28, 49, 76, 374
BsiHKAI GWGCWC 3 cut(s) 2152, 2803, 3183
BsiHKCI CYCGRG 2 cut(s) 225, 2570
BsiSI CCGG 6 cut(s) 45, 49, 57, 1069, 1350, 2702
BslFI GGGAC 3 cut(s) 1182, 2992, 3201
BslI CCNNNNNNNGG 6 cut(s) 172, 771, 1542, 2171, 2527, 3367
BsmAI GTCTC 4 cut(s) 228, 1980, 2793, 3388
BsmFI GGGAC 3 cut(s) 1182, 2992, 3201
BsmI GAATGC 2 cut(s) 672, 1183
Bso31I GGTCTC 2 cut(s) 228, 2793
BsoBI CYCGRG 2 cut(s) 225, 2570
Bsp120I GGGCCC 1 cut(s) 2008
Bsp13I TCCGGA 1 cut(s) 1349
Bsp1720I GCTNAGC 1 cut(s) 819
Bsp19I CCATGG 2 cut(s) 1541, 2209
BspCNI CTCAG 8 cut(s) 634, 1711, 1810, 2047, 2824, 2989, 3169, 3220
BspEI TCCGGA 1 cut(s) 1349
BspHI TCATGA 3 cut(s) 1735, 3235, 3430
BspLI GGNNCC 9 cut(s) 43, 55, 61, 148, 2010, 2163, 2641, 2855, 3189
BspMAI CTGCAG 3 cut(s) 1780, 2220, 2686
BspMI ACCTGC 2 cut(s) 748, 2689
BspPI GGATC 3 cut(s) 2481, 2930, 3397
BspT107I GGYRCC 3 cut(s) 41, 2639, 2853
BspTI CTTAAG 1 cut(s) 950
BspTNI GGTCTC 2 cut(s) 228, 2793
BsrBI CCGCTC 1 cut(s) 1670
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 271, 2492, 2640
BssAI RCCGGY 1 cut(s) 44
BssNI GRCGYC 2 cut(s) 42, 2854
BssSI CACGAG 1 cut(s) 2829
BssT1I CCWWGG 6 cut(s) 870, 1541, 2209, 2334, 2370, 2966
Bst2BI CACGAG 1 cut(s) 2829
Bst2UI CCWGG 5 cut(s) 978, 999, 1166, 2644, 2653
Bst6I CTCTTC 2 cut(s) 633, 1050
BstACI GRCGYC 2 cut(s) 42, 2854
BstAFI CTTAAG 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 6 cut(s) 46, 392, 799, 1107, 1562, 2407
BstDSI CCRYGG 3 cut(s) 468, 1541, 2209
BstEII GGTNACC 1 cut(s) 233
BstENI CCTNNNNNAGG 2 cut(s) 769, 2169
BstH2I RGCGCY 2 cut(s) 45, 2857
BstHHI GCGC 3 cut(s) 44, 315, 2856
BstMAI GTCTC 4 cut(s) 228, 1980, 2793, 3388
BstMCI CGRYCG 4 cut(s) 28, 49, 76, 374
BstNI CCWGG 5 cut(s) 978, 999, 1166, 2644, 2653
BstNSI RCATGY 2 cut(s) 789, 1727
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 6 cut(s) 48, 976, 997, 1164, 2642, 2651
BstSFI CTRYAG 4 cut(s) 1182, 1776, 2216, 2682
BstSLI GKGCMC 7 cut(s) 2012, 2152, 2370, 2571, 2642, 3098, 3335
BstV1I GCAGC 6 cut(s) 131, 134, 451, 794, 1425, 1513
BstV2I GAAGAC 1 cut(s) 1428
BstX2I RGATCY 2 cut(s) 2486, 3270
BstXI CCANNNNNNTGG 2 cut(s) 1150, 2393
BstYI RGATCY 2 cut(s) 2486, 3270
BstZI CGGCCG 3 cut(s) 25, 46, 73
BsuI GTATCC 2 cut(s) 1633, 2641
BtgI CCRYGG 3 cut(s) 468, 1541, 2209
BtrI CACGTC 1 cut(s) 2401
BtsI GCAGTG 3 cut(s) 851, 1348, 2816
BveI ACCTGC 2 cut(s) 748, 2689
Cac8I GCNNGC 6 cut(s) 46, 392, 799, 1107, 1562, 2407
CaiI CAGNNNCTG 2 cut(s) 2093, 2818
CciI TCATGA 3 cut(s) 1735, 3235, 3430
CfoI GCGC 3 cut(s) 44, 315, 2856
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 9 cut(s) 1162, 1260, 2008, 2009, 2206, 2999, 3188, 3313, 3358
Csp6I GTAC 4 cut(s) 4, 2221, 3068, 3211
CspCI CAANNNNNGTGG 2 cut(s) 2323, 2358
CviQI GTAC 4 cut(s) 4, 2221, 3068, 3211
DinI GGCGCC 2 cut(s) 43, 2855
DraI TTTAAA 2 cut(s) 520, 2709
EaeI YGGCCR 4 cut(s) 25, 46, 73, 2347
EagI CGGCCG 3 cut(s) 25, 46, 73
Eam1104I CTCTTC 2 cut(s) 633, 1050
EarI CTCTTC 2 cut(s) 633, 1050
EciI GGCGGA 2 cut(s) 81, 97
Ecl136II GAGCTC 2 cut(s) 2801, 3181
EclXI CGGCCG 3 cut(s) 25, 46, 73
Eco130I CCWWGG 6 cut(s) 870, 1541, 2209, 2334, 2370, 2966
Eco147I AGGCCT 2 cut(s) 1105, 1564
Eco24I GRGCYC 6 cut(s) 945, 1500, 2012, 2803, 3183, 3505
Eco31I GGTCTC 2 cut(s) 228, 2793
Eco47I GGWCC 3 cut(s) 3188, 3313, 3358
Eco52I CGGCCG 3 cut(s) 25, 46, 73
Eco53kI GAGCTC 2 cut(s) 2801, 3181
Eco57I CTGAAG 5 cut(s) 1542, 1777, 2431, 2650, 3386
Eco88I CYCGRG 2 cut(s) 225, 2570
Eco91I GGTNACC 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 2801, 3181
EcoNI CCTNNNNNAGG 2 cut(s) 769, 2169
EcoO109I RGGNCCY 4 cut(s) 1260, 2008, 2009, 3313
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 5 cut(s) 976, 997, 1164, 2642, 2651
EcoT14I CCWWGG 6 cut(s) 870, 1541, 2209, 2334, 2370, 2966
EcoT38I GRGCYC 6 cut(s) 945, 1500, 2012, 2803, 3183, 3505
EgeI GGCGCC 2 cut(s) 43, 2855
EheI GGCGCC 2 cut(s) 43, 2855
ErhI CCWWGG 6 cut(s) 870, 1541, 2209, 2334, 2370, 2966
FalI AAGNNNNNCTT 8 cut(s) 974, 1006, 1047, 1079, 1775, 1807, 3109, 3141
FaqI GGGAC 3 cut(s) 1182, 2992, 3201
FbaI TGATCA 4 cut(s) 1096, 1684, 2140, 2167
FblI GTMKAC 3 cut(s) 610, 635, 1755
FriOI GRGCYC 6 cut(s) 945, 1500, 2012, 2803, 3183, 3505
GlaI GCGC 3 cut(s) 43, 314, 2855
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 960
HaeII RGCGCY 2 cut(s) 45, 2857
HapII CCGG 6 cut(s) 45, 49, 57, 1069, 1350, 2702
HhaI GCGC 3 cut(s) 44, 315, 2856
Hin1I GRCGYC 2 cut(s) 42, 2854
Hin6I GCGC 3 cut(s) 42, 313, 2854
HinP1I GCGC 3 cut(s) 42, 313, 2854
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 1015
HpaII CCGG 6 cut(s) 45, 49, 57, 1069, 1350, 2702
Hpy166II GTNNAC 7 cut(s) 348, 611, 636, 1471, 1756, 2150, 2516
Hpy8I GTNNAC 7 cut(s) 348, 611, 636, 1471, 1756, 2150, 2516
HpyCH4IV ACGT 3 cut(s) 259, 1089, 2400
HpySE526I ACGT 3 cut(s) 259, 1089, 2400
Hsp92I GRCGYC 2 cut(s) 42, 2854
HspAI GCGC 3 cut(s) 42, 313, 2854
KasI GGCGCC 2 cut(s) 41, 2853
Kpn2I TCCGGA 1 cut(s) 1349
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 4 cut(s) 1096, 1684, 2140, 2167
LmnI GCTCC 9 cut(s) 53, 59, 152, 559, 748, 979, 1675, 2167, 2477
Lsp1109I GCAGC 6 cut(s) 131, 134, 451, 794, 1425, 1513
LweI GCATC 4 cut(s) 662, 1600, 1741, 3047
MaeII ACGT 3 cut(s) 259, 1089, 2400
MbiI CCGCTC 1 cut(s) 1670
MfeI CAATTG 2 cut(s) 1172, 1614
MflI RGATCY 2 cut(s) 2486, 3270
Mly113I GGCGCC 2 cut(s) 42, 2854
MlyI GAGTC 7 cut(s) 353, 679, 1066, 1980, 2120, 2981, 3380
MmeI TCCRAC 5 cut(s) 174, 354, 886, 1168, 2108
MroI TCCGGA 1 cut(s) 1349
MroNI GCCGGC 1 cut(s) 44
MroXI GAANNNNTTC 5 cut(s) 2253, 2608, 3076, 3121, 3293
MslI CAYNNNNRTG 4 cut(s) 693, 1869, 2244, 3050
MspA1I CMGCKG 1 cut(s) 3364
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 6 cut(s) 45, 49, 57, 1069, 1350, 2702
MspR9I CCNGG 6 cut(s) 50, 978, 999, 1166, 2644, 2653
MunI CAATTG 2 cut(s) 1172, 1614
Mva1269I GAATGC 2 cut(s) 672, 1183
MvaI CCWGG 5 cut(s) 978, 999, 1166, 2644, 2653
NaeI GCCGGC 1 cut(s) 46
NarI GGCGCC 2 cut(s) 42, 2854
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 2 cut(s) 1541, 2209
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 9 cut(s) 43, 55, 61, 148, 2010, 2163, 2641, 2855, 3189
NmeAIII GCCGAG 4 cut(s) 51, 101, 120, 2375
NmuCI GTSAC 9 cut(s) 233, 242, 1233, 1316, 1322, 1334, 1355, 2396, 2814
NspI RCATGY 2 cut(s) 789, 1727
PagI TCATGA 3 cut(s) 1735, 3235, 3430
PceI AGGCCT 2 cut(s) 1105, 1564
PctI GAATGC 2 cut(s) 672, 1183
PdiI GCCGGC 1 cut(s) 46
PdmI GAANNNNTTC 5 cut(s) 2253, 2608, 3076, 3121, 3293
PflMI CCANNNNNTGG 1 cut(s) 1542
PleI GAGTC 7 cut(s) 352, 679, 1066, 1980, 2119, 2981, 3379
PluTI GGCGCC 2 cut(s) 45, 2857
PpsI GAGTC 7 cut(s) 352, 679, 1066, 1980, 2119, 2981, 3379
PpuMI RGGWCCY 1 cut(s) 3313
PsiI TTATAA 1 cut(s) 2004
Psp124BI GAGCTC 2 cut(s) 2803, 3183
Psp5II RGGWCCY 1 cut(s) 3313
Psp6I CCWGG 5 cut(s) 976, 997, 1164, 2642, 2651
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 5 cut(s) 976, 997, 1164, 2642, 2651
PspN4I GGNNCC 9 cut(s) 43, 55, 61, 148, 2010, 2163, 2641, 2855, 3189
PspOMI GGGCCC 1 cut(s) 2008
PspPI GGNCC 9 cut(s) 1162, 1260, 2008, 2009, 2206, 2999, 3188, 3313, 3358
PspPPI RGGWCCY 1 cut(s) 3313
PsrI GAACNNNNNNTAC 2 cut(s) 1282, 1314
PstI CTGCAG 3 cut(s) 1780, 2220, 2686
PstNI CAGNNNCTG 2 cut(s) 2093, 2818
PsuI RGATCY 2 cut(s) 2486, 3270
PvuII CAGCTG 1 cut(s) 3364
RsaI GTAC 4 cut(s) 5, 2222, 3069, 3212
RsaNI GTAC 4 cut(s) 4, 2221, 3068, 3211
RseI CAYNNNNRTG 4 cut(s) 693, 1869, 2244, 3050
SacI GAGCTC 2 cut(s) 2803, 3183
Sau96I GGNCC 9 cut(s) 1162, 1260, 2008, 2009, 2206, 2999, 3188, 3313, 3358
SbfI CCTGCAGG 1 cut(s) 2686
ScaI AGTACT 1 cut(s) 2222
SchI GAGTC 7 cut(s) 353, 679, 1066, 1980, 2120, 2981, 3380
ScrFI CCNGG 6 cut(s) 50, 978, 999, 1166, 2644, 2653
SdaI CCTGCAGG 1 cut(s) 2686
SfaNI GCATC 4 cut(s) 662, 1600, 1741, 3047
SfcI CTRYAG 4 cut(s) 1182, 1776, 2216, 2682
SfoI GGCGCC 2 cut(s) 43, 2855
SinI GGWCC 3 cut(s) 3188, 3313, 3358
SmiMI CAYNNNNRTG 4 cut(s) 693, 1869, 2244, 3050
SmlI CTYRAG 3 cut(s) 543, 950, 3182
SmoI CTYRAG 3 cut(s) 543, 950, 3182
SpeI ACTAGT 1 cut(s) 776
Sse8387I CCTGCAGG 1 cut(s) 2686
SseBI AGGCCT 2 cut(s) 1105, 1564
SspDI GGCGCC 2 cut(s) 41, 2853
SspI AATATT 1 cut(s) 676
SstI GAGCTC 2 cut(s) 2803, 3183
StuI AGGCCT 2 cut(s) 1105, 1564
StyD4I CCNGG 6 cut(s) 48, 976, 997, 1164, 2642, 2651
StyI CCWWGG 6 cut(s) 870, 1541, 2209, 2334, 2370, 2966
TaiI ACGT 3 cut(s) 262, 1092, 2403
TaqI TCGA 3 cut(s) 157, 814, 3392
TatI WGTACW 2 cut(s) 2220, 3210
TauI GCSGC 7 cut(s) 12, 39, 42, 65, 97, 113, 147
TseFI GTSAC 9 cut(s) 233, 242, 1233, 1316, 1322, 1334, 1355, 2396, 2814
TseI GCWGC 6 cut(s) 119, 122, 464, 782, 1413, 1526
Tsp45I GTSAC 9 cut(s) 233, 242, 1233, 1316, 1322, 1334, 1355, 2396, 2814
TspGWI ACGGA 3 cut(s) 621, 1097, 1919
Van91I CCANNNNNTGG 1 cut(s) 1542
Vha464I CTTAAG 1 cut(s) 950
VneI GTGCAC 1 cut(s) 2148
VpaK11BI GGWCC 3 cut(s) 3188, 3313, 3358
XagI CCTNNNNNAGG 2 cut(s) 769, 2169
XapI RAATTY 4 cut(s) 490, 964, 2329, 3320
XceI RCATGY 2 cut(s) 789, 1727
XcmI CCANNNNNNNNNTGG 1 cut(s) 1849
XmaJI CCTAGG 1 cut(s) 2966
XmiI GTMKAC 3 cut(s) 610, 635, 1755
XmnI GAANNNNTTC 5 cut(s) 2253, 2608, 3076, 3121, 3293
ZrmI AGTACT 1 cut(s) 2222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.