Rroxscaffold_5G00345520

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005746
Physical Location & Seq
Forward (+)
15948433 .. 15951288
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345520.1

Sequence Viewer

Length: 903 bp
ATGCTTTTGGCAACACTTCATTTGTTCACAACATATCCTTCATTCAAGGTCTTGTTATCTCTTAAGGAGATTTGTATGGTTTCATTGGACGTCATTTTTGGTATATTAGTTAGCATCATCGGAATGAAGAGGGCATCATCCAACAGAAGTTCAATGGAAGATTCACTACTTTTTGCCGACATGGACCTCGAGGAAGGGCAATCGTTCGCATATGGATGGTCATACATTCGTCCGGGCTTGTTAAAGTCTCCGTGTTCGCAGAATTTGGATGGCTATGGAGAAAGCAATAAGAAAGCACCTCCTAGGGCTTCTCAGCACCATGACTCTAAACGAGGGCCACTCCACGATGATGGAACAGACCGATGTACGAAAGGATTCATTGTTGGCGAGGAGGGGCATCGACAAAGTGATAGAAAAAGAAGGGATTCTTCTTTCGATGAAAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCCGAGCTCAAGGGACCAATAAAAGATTTCTCTCAGTACAAGGAGTATGTGCAAGAATATCATGATAGGTATGATAGCTACCGCTCGTTGAACAAGATCTTAGAGAGTTACGGGAATGAGTTCCTAAAGCTAGGGAAGGACGTTGAATTTGCTTCGGGCACAGAGAGATATTATATCATCTTAGACCAGCTGAAGGAGTCCTATCGTCGGTGTGGATCGGTGACTCGATGGTTTGAGATGGAGCAGATCACGATCATCATGGAAAATCATGAGAAACATCGTGAAAAGGTAGCTGCTCACTTCGACAGGGAAATCGCGAGGACGGACCGCATCATACACGAACCGGACGAGTGCATTGCCCGCCGTGCCGAGGATACCGGGCAACAAATTGCACGGTCGAGAGAATGCAGTAAGGGCACATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

300

Amino Acids

34.74

Weight (kDa)

6.1

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 164 - 248 1e-10 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AbsI CCTCGAGG 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 561
AccII CGCG 1 cut(s) 794
AciI CCGC 3 cut(s) 559, 805, 838
AclWI GGATC 1 cut(s) 700
AcsI RAATTY 2 cut(s) 262, 623
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 367, 515
AfiI CCNNNNNNNGG 3 cut(s) 670, 684, 847
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 4 cut(s) 46, 153, 568, 623
AluBI AGCT 5 cut(s) 484, 555, 607, 667, 770
AluI AGCT 5 cut(s) 484, 555, 607, 667, 770
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 700
Ama87I CYCGRG 2 cut(s) 188, 479
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 2 cut(s) 262, 623
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 608, 640
Asp700I GAANNNNTTC 3 cut(s) 374, 424, 596
AspA2I CCTAGG 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 184, 335, 491, 802
AsuC2I CCSGG 2 cut(s) 234, 856
AsuHPI GGTGA 1 cut(s) 709
AvaI CYCGRG 2 cut(s) 188, 479
AvaII GGWCC 3 cut(s) 184, 491, 802
AvrII CCTAGG 1 cut(s) 302
BaeGI GKGCMC 2 cut(s) 638, 896
BanII GRGCYC 2 cut(s) 480, 486
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 757
BccI CCATC 5 cut(s) 210, 263, 344, 699, 709
BceAI ACGGC 1 cut(s) 825
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciVI GTATCC 1 cut(s) 844
BcnI CCSGG 2 cut(s) 234, 856
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 3 cut(s) 303, 608, 901
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 844
BglII AGATCT 1 cut(s) 573
BisI GCNGC 1 cut(s) 771
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 234, 856
Bme18I GGWCC 3 cut(s) 184, 491, 802
BmeT110I CYCGRG 2 cut(s) 188, 479
BmgT120I GGNCC 4 cut(s) 184, 335, 491, 802
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 2 cut(s) 234, 856
BmsI GCATC 4 cut(s) 123, 143, 406, 816
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 234, 856
BsaBI GATNNNNATC 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 302, 846
BsaWI WCCGGW 1 cut(s) 820
Bsc4I CCNNNNNNNGG 3 cut(s) 670, 684, 847
Bse3DI GCAATG 1 cut(s) 831
Bse8I GATNNNNATC 1 cut(s) 728
BseDI CCNNGG 2 cut(s) 302, 846
BseGI GGATG 4 cut(s) 137, 221, 274, 478
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 3 cut(s) 670, 684, 847
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 2 cut(s) 326, 524
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 2 cut(s) 638, 896
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 794
Bsh1285I CGRYCG 1 cut(s) 875
BshFI GGCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 2 cut(s) 188, 479
BsiSI CCGG 3 cut(s) 233, 821, 855
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 3 cut(s) 670, 684, 847
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 1 cut(s) 337
BsoBI CYCGRG 2 cut(s) 188, 479
Bsp1286I GDGCHC 4 cut(s) 480, 486, 638, 896
Bsp143I GATC 4 cut(s) 573, 692, 723, 729
Bsp68I TCGCGA 1 cut(s) 794
BspACI CCGC 3 cut(s) 559, 805, 838
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 2 cut(s) 325, 523
BspFNI CGCG 1 cut(s) 794
BspHI TCATGA 2 cut(s) 538, 745
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 1 cut(s) 700
BspTI CTTAAG 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 831
BssECI CCNNGG 2 cut(s) 302, 846
BssMI GATC 4 cut(s) 573, 692, 723, 729
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 873
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 838
BstDEI CTNAG 4 cut(s) 312, 510, 577, 658
BstF5I GGATG 4 cut(s) 137, 221, 274, 478
BstFNI CGCG 1 cut(s) 794
BstKTI GATC 4 cut(s) 576, 695, 726, 732
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 573, 692, 723, 729
BstMCI CGRYCG 1 cut(s) 875
BstMWI GCNNNNNNNGC 3 cut(s) 837, 842, 891
BstNSI RCATGY 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 232, 854
BstSLI GKGCMC 2 cut(s) 638, 896
BstUI CGCG 1 cut(s) 794
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 573
BsuI GTATCC 1 cut(s) 844
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 4 cut(s) 137, 221, 274, 478
BtuMI TCGCGA 1 cut(s) 794
Cac8I GCNNGC 1 cut(s) 838
CciI TCATGA 2 cut(s) 538, 745
Cfr13I GGNCC 4 cut(s) 184, 335, 491, 802
CpoI CGGWCCG 1 cut(s) 802
Csp6I GTAC 2 cut(s) 366, 514
CspI CGGWCCG 1 cut(s) 802
CviAII CATG 6 cut(s) 181, 320, 539, 736, 746, 897
CviQI GTAC 2 cut(s) 366, 514
DdeI CTNAG 4 cut(s) 312, 510, 577, 658
DpnI GATC 4 cut(s) 575, 694, 725, 731
DpnII GATC 4 cut(s) 573, 692, 723, 729
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 480, 486
Eco47I GGWCC 3 cut(s) 184, 491, 802
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 2 cut(s) 188, 479
EcoICRI GAGCTC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 2 cut(s) 480, 486
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 6 cut(s) 184, 323, 542, 739, 749, 900
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 1 cut(s) 504
FatI CATG 6 cut(s) 180, 319, 538, 735, 745, 896
FauI CCCGC 1 cut(s) 845
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 4 cut(s) 124, 228, 281, 485
FriOI GRGCYC 2 cut(s) 480, 486
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 3 cut(s) 303, 608, 901
GluI GCNGC 1 cut(s) 771
HaeIII GGCC 1 cut(s) 337
HapII CCGG 3 cut(s) 233, 821, 855
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 6 cut(s) 184, 323, 542, 739, 749, 900
HinfI GANTC 6 cut(s) 161, 323, 375, 425, 674, 700
HpaII CCGG 3 cut(s) 233, 821, 855
HphI GGTGA 1 cut(s) 709
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 6 cut(s) 539, 727, 746, 758, 793, 876
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 687
HpyAV CCTTC 6 cut(s) 48, 188, 414, 463, 607, 664
HpyCH4III ACNGT 1 cut(s) 873
HpyCH4IV ACGT 2 cut(s) 90, 618
HpyCH4V TGCA 4 cut(s) 529, 831, 869, 885
HpyF10VI GCNNNNNNNGC 3 cut(s) 837, 842, 891
HpyF3I CTNAG 4 cut(s) 312, 510, 577, 658
HpySE526I ACGT 2 cut(s) 90, 618
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 6 cut(s) 184, 323, 542, 739, 749, 900
Kzo9I GATC 4 cut(s) 573, 692, 723, 729
LmnI GCTCC 1 cut(s) 718
LpnPI CCDG 5 cut(s) 246, 677, 769, 834, 868
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 4 cut(s) 123, 143, 406, 816
MaeI CTAG 3 cut(s) 303, 608, 901
MaeII ACGT 2 cut(s) 90, 618
MaeIII GTNAC 2 cut(s) 584, 697
MalI GATC 4 cut(s) 575, 694, 725, 731
MbiI CCGCTC 1 cut(s) 561
MboI GATC 4 cut(s) 573, 692, 723, 729
MboII GAAGA 3 cut(s) 139, 170, 420
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 4 cut(s) 480, 486, 638, 896
MluCI AATT 3 cut(s) 262, 623, 864
MlyI GAGTC 3 cut(s) 317, 683, 694
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 123, 184, 197, 309, 326, 382, 385, 789, 841
MroXI GAANNNNTTC 3 cut(s) 374, 424, 596
MseI TTAA 2 cut(s) 63, 242
MslI CAYNNNNRTG 3 cut(s) 122, 214, 348
MspA1I CMGCKG 1 cut(s) 667
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 3 cut(s) 233, 821, 855
MspR9I CCNGG 2 cut(s) 234, 856
Mva1269I GAATGC 1 cut(s) 887
MvnI CGCG 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 837, 842, 891
NciI CCSGG 2 cut(s) 234, 856
NdeI CATATG 1 cut(s) 211
NdeII GATC 4 cut(s) 573, 692, 723, 729
NlaIII CATG 6 cut(s) 184, 323, 542, 739, 749, 900
NlaIV GGNNCC 1 cut(s) 492
NmeAIII GCCGAG 1 cut(s) 871
NmuCI GTSAC 1 cut(s) 697
NruI TCGCGA 1 cut(s) 794
NspI RCATGY 1 cut(s) 900
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 2 cut(s) 538, 745
PcsI WCGNNNNNNNCGW 1 cut(s) 822
PctI GAATGC 1 cut(s) 887
PdmI GAANNNNTTC 3 cut(s) 374, 424, 596
PfeI GAWTC 3 cut(s) 161, 375, 425
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 3 cut(s) 317, 682, 694
PpsI GAGTC 3 cut(s) 317, 682, 694
Psp124BI GAGCTC 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 4 cut(s) 184, 335, 491, 802
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 573
PvuII CAGCTG 1 cut(s) 667
RruI TCGCGA 1 cut(s) 794
RsaI GTAC 2 cut(s) 367, 515
RsaNI GTAC 2 cut(s) 366, 514
RseI CAYNNNNRTG 3 cut(s) 122, 214, 348
Rsr2I CGGWCCG 1 cut(s) 802
RsrII CGGWCCG 1 cut(s) 802
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 63, 242
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 4 cut(s) 573, 692, 723, 729
Sau96I GGNCC 4 cut(s) 184, 335, 491, 802
SchI GAGTC 3 cut(s) 317, 683, 694
ScrFI CCNGG 2 cut(s) 234, 856
SduI GDGCHC 4 cut(s) 480, 486, 638, 896
SfaNI GCATC 4 cut(s) 123, 143, 406, 816
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 3 cut(s) 184, 491, 802
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 3 cut(s) 122, 214, 348
SmlI CTYRAG 3 cut(s) 62, 188, 485
SmoI CTYRAG 3 cut(s) 62, 188, 485
Sse9I AATT 3 cut(s) 262, 623, 864
SsiI CCGC 3 cut(s) 559, 805, 838
SspMI CTAG 3 cut(s) 303, 608, 901
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 232, 854
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 873
TaiI ACGT 2 cut(s) 93, 621
TaqI TCGA 6 cut(s) 189, 400, 435, 703, 780, 875
TaqII GACCGA 1 cut(s) 375
TasI AATT 3 cut(s) 262, 623, 864
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 3 cut(s) 161, 375, 425
Tru1I TTAA 2 cut(s) 63, 242
Tru9I TTAA 2 cut(s) 63, 242
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 6 cut(s) 8, 30, 72, 140, 367, 453
TspGWI ACGGA 2 cut(s) 240, 815
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 3 cut(s) 184, 491, 802
XapI RAATTY 2 cut(s) 262, 623
XceI RCATGY 1 cut(s) 900
XhoI CTCGAG 1 cut(s) 188
XmaJI CCTAGG 1 cut(s) 302
XmnI GAANNNNTTC 3 cut(s) 374, 424, 596
XspI CTAG 3 cut(s) 303, 608, 901
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.