MD17G1176700.v1.1

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005746
Physical Location & Seq
Forward (+)
20026309 .. 20042453
16145 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1176700.v1.1.491

Sequence Viewer

Length: 3723 bp
ATGTACTCATCCAAGTCCGGCCGAGTTGGCGGCGGTGGCTCAGGACGCGGAGTCGGAGCCGCCAAGCTTGGCCGAGCCTCCTTCCCTCCGCCCCTCCGCTCCTCAGCCCAAACCAGCCGCCTCTCCCTCGGAGGCTCCAATCCCAGAGGCCGCAACTCAGGCTCCAATACGTCAGCAGCCGCCGCCCCGCCGGCCGTGGAAGAGCAGTTCAGTTTAGTCGCCGGGCGTAACCCACTTGCTTTCTCTGTGATCATTCGTATGGCGCCGGACTTGGTGGAAGAGATCAAGCGCGTCGAAGACCAAGGTGGTGCGCCCCGCATCAAGTTCGGTCCGTCGCCTAACAACTCCCTCGGCAATGTTATTGATCTGGGTGGGAAGGAGTTTACATTTACATGGGACCAGGAAGTTGGTGACCTCTGTGACATTTATGAAGAGCGTGAAAGTGGTGAAGGTGGAAATGGTTTGCTAGTTGAATCAGGATTTGCATGGCGCAAAGTTAATGTGCATCGGATCTTAGATGAGTCAACTAAGAACCGTGTTAAACAGCGGTCAGAGGAAGCTGAGCGCAAGAATAAATCCCGCAAAGCCATTGTGTTAGAACAATGTACAGAGACGAAGAATCAGTTAAAGCAATATGATACTACAACAGCTAATCAACCTTGGAGGAATTTCAAACGAAAGAAAGAGACTCCCTTTAAGAAGCAGAAAGTTGAACTGCCTCAAGCTCCCCCTAAATCTACAGTTAAAACTGGAGTGTCATCAACAACTACTGCAAAGGGTAAGTACTCATCATCACCTCTTCAAACTCTACCTGAGCAATCTGGTGCTCTACCATCTCCGTTAAGAACTAGAAATAATTTGATGAGTCATGCAAGTGTGGAAGATATTATACCCTTTCAAGTGATTAAAAAAGACAAACCTGCTCCAAGCTCTGATAAAGAAATCCAAATCACGACCAGTATTGTACCACAAGAAACAGTGGGCAAAGGCAATGGTGGAGCTAATGTTACAGATTTGCAGATTATGTTGATTGCTTTGCTCACGGAGAATCCCAAAGGCATGAGAATAAAGGATTTAGAGAAAGCTATTGCAGATTCATATCCCAACTCTATAAAGAAAATTGAGCCCATTATTAAGAAGATTGCTAATTATCAAGCTCCAGGGAGATACATCTTGAAATCAGGAGTGGAGTTAGAAAGCTTAAAGAAACCTGTGTCTGAAAGTGGAAGTTCTCCCGAGGAGAAACTTCGCCAGAAACCTGCTTCTGATGGTAACCGTGAATTGCCTGTTCAAGCACCACACTTTGAGGAGAAAGTTTCTCCTAATGAGTTGGAGGAGCAGGTTCACGAACGATTGGATGCTACAATTGGTCAGGATTCAAGTGCATTGATTAAAATTGATAACCAACAGCATTCCGCTGATTTTTTTGGTGAAAAAAGGGGCTCAGACGATAATGAAGCGCGAGGAGGAAGCTCTAGCAATACTGGGAGTGCCAGTGACAGTGATAGTGACAGCAGCGATACCGGAAGTGACAGTGGAAGTCATAGCAGAAGTAAAAGTCCAGCACAAAATGGGAGTGGAAGCAGTAGTGATAGTGAAAGTGATGCATCTTCTAATAGCAAGGAAGGTTTTGATGAGGATGTGGATATTATGGCAAGTGACGATGACAAAGAACTGAAGCTTAAATTGCAAGGCTCTGAACAAGGGTTTTCTACTTTGCCCATCCCATGGAGAACTCCTGATGGCACGAATGTGCAGAGTGGGATTGATGAGAAGCAAGATGATCTTGAAGTTGACGCAGTTGAGATTGAAAAACAGTTGCTTGATGCTGATCAGGTTGCTGAATTGGCTGTAGTTAGTAACTCTAATCGTAATAAAAGTGAAACTCTAGAAGAAACAAAACCCTTTTCACCTGAGCATGGTGAGCTGCAAGGCCGCCAAAGTTTGGTAGACCCTGTGTATGGAGGGGAGAGTTTAGCCAAGGATGACTTCAGATATGAGCAGTCTGACAGTTCTGAGAGGATATCTAAAGGTATATCCAAACAAGGTTCTGAGGTAAAGCACACTGATGAGAAATCTAAAAACAATAAAAGATTAAAAACAGAAATATCACAGCAACCTTCTATTTCTGCGGGTAAAGGTGTCCATCTTTCAGAGGCTTCTCACAATTTGTCTCCTGATAGACTTGTTGAAGGCTCTCATAAGGACCCTGTCTCTCAAATGATGGATAGAGATGATAGGGATGAGAATATTGAATCTGGATCACTAAAGGTGTGCAACCAAGCATTTTCTGGCAGATATACTTCAGAGTTTAAACAATCAAGTTGGCAGTCTTTTGATCATAATTTACAGACAAAGGTTCCTGATTCAGCAGAAAGACCAGATAGATATGCGGAGAGCTTAGGGCATGGCGGGAAGTACTCTGAAAAGAGCTCTCAAATGCATGACGGTTACCTCTTACAAAAAGATAAATTTCATAGAGATACTCAAAATGAGGATGGTTATGCTAATGAGAGAAAGGTTCCAGGAAATTCTAAGGAAGGTGGTACCCGAGGCAAACAGTTAGTGCCCTTGGATCCCCACTACCAGAAAGATGGTGATATGGCTGGAAAGATCAAGGGAAGTGCACAAGTTTCCAGCCTGTTATTGGGTTCTTCACCAAAGTATAACAGCAGAAATGGTGCAGCCGCATCCCCTGTCGTTAATGGCAAAGGCAGTAAACTCCAAAGAGAGTTTTCAGACTTGGAGTTGGGCGAACTTCGTGAGCCCTTGCCTGAGGAAATGACAGTTAATAAGCAATTTGAGAGAAAAAGTTCTTTTAAGCAGTCAGATAACAAAAAGAGCACTTCAGAGAACCAGGTTTCTGAATTCAGTAAAGTGAAACGTGCTGGAAAGGCAAATTTTGATTCAGGAAGGCCAGCCTCTCCAGATTTAAACTCTAAGTTTCCAAGTAATCAGGAAGGCTTGAATAAAAAGAGGAACTACGAAGATCGCATTGAGGATTTAACAAGGTCTCAACAGAGAGCTGTGCAGTCTGAGTCGCAACACCCGTCACGAGTAGATCATCCTGATTTGGGGCGTTTGTTTAGCAAAACAGTCGGTCTTAGTAGTAAATCTAGACAGAATGAAGTTGGAGGCAGACAAGCAATTGGTGTGGCTGGACATGGAGAAAGCAATAAGAAAGCAACCCCAAGTGCTCCTCAGCAGCATAACTCAAAACGAGGGCTAGTTTCCCACCCCATACAAGAAAGTAAAAGACATGCATCCAATATAATGGTGGATTCGACTGATGTACGAAAGAAATCAATGGTGGCAGACGGCAATGACACTGACAGAAAAAAGAGGGATTCTTCTTCAGATGAGAATAGTTGTTCCTATTCTAAGTATGAGAAGAATGAGCCCGAGCGCAAGGGACCAATAAATAATTTCTCTCAGTACGAAGAGTATGTGCAAGAATATCGTGATAAGTATGATAGCTATTGCTCGTTGAACAAAACCATAGAGAGTTACAGGAATGAGTTTGAAAAGCTAGGAAAGGACCTTGATTATGCTACTCAAGGCACGGAGAAATATTATAAGATCTTGGGGCAGGTGAAGGAATCATATCGTCGATGTGAAAGGAAACATACGAGGCTGAAAAGAATATTTGTGGTACTTCATGAAGAATTGAAGCACATTAAGCAACGGATTAAGGACTTTGCAGTCTCATACATGGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1241

Amino Acids

136.98

Weight (kDa)

7.15

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1138 - 1234 1.9e-21 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3576
AarI CACCTGC 1 cut(s) 3580
AasI GACNNNNNNGTC 1 cut(s) 3701
Acc36I ACCTGC 4 cut(s) 928, 1267, 1330, 3580
Acc65I GGTACC 1 cut(s) 2546
AccB1I GGYRCC 2 cut(s) 262, 2546
AccB7I CCANNNNNTGG 2 cut(s) 1728, 1945
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 1950
AccII CGCG 3 cut(s) 48, 291, 1462
AclWI GGATC 4 cut(s) 518, 2269, 2570, 2583
AcoI YGGCCR 3 cut(s) 19, 70, 192
AcsI RAATTY 5 cut(s) 667, 2471, 2530, 2867, 2899
AcuI CTGAAG 5 cut(s) 1697, 1975, 2289, 2832, 3339
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 9 cut(s) 5, 607, 785, 966, 2420, 2548, 3294, 3437, 3654
AfiI CCNNNNNNNGG 6 cut(s) 1728, 1919, 1945, 1961, 2647, 3074
AhdI GACNNNNNGTC 1 cut(s) 50
AjnI CCWGG 4 cut(s) 399, 1159, 2524, 2856
AjuI GAANNNNNNNTTGG 2 cut(s) 1973, 2005
AleI CACNNNNGTG 1 cut(s) 1751
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
Alw21I GWGCWC 5 cut(s) 829, 2435, 2629, 2846, 3199
Alw26I GTCTC 6 cut(s) 605, 680, 2178, 2218, 3018, 3709
Alw44I GTGCAC 1 cut(s) 2625
AlwI GGATC 4 cut(s) 518, 2269, 2570, 2583
Ama87I CYCGRG 3 cut(s) 1235, 2550, 3401
AoxI GGCC 6 cut(s) 19, 70, 148, 192, 1933, 2915
ApaLI GTGCAC 1 cut(s) 2625
ApeKI GCWGC 5 cut(s) 176, 1515, 1927, 2684, 3205
ApoI RAATTY 5 cut(s) 667, 2471, 2530, 2867, 2899
Asp700I GAANNNNTTC 1 cut(s) 2812
Asp718I GGTACC 1 cut(s) 2546
AspLEI GCGC 7 cut(s) 265, 291, 313, 492, 567, 1462, 3408
AspS9I GGNCC 5 cut(s) 329, 397, 2206, 3413, 3538
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 9 cut(s) 422, 458, 786, 1442, 1902, 1934, 2609, 2649, 3604
AvaI CYCGRG 3 cut(s) 1235, 2550, 3401
AvaII GGWCC 5 cut(s) 329, 397, 2206, 3413, 3538
AxyI CCTNAGG 1 cut(s) 2775
BaeGI GKGCMC 2 cut(s) 2571, 2629
BamHI GGATCC 1 cut(s) 2575
BanI GGYRCC 2 cut(s) 262, 2546
BanII GRGCYC 5 cut(s) 1128, 1445, 2435, 2769, 3402
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
BauI CACGAG 1 cut(s) 3054
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 5 cut(s) 829, 2435, 2629, 2846, 3199
BbvCI CCTCAGC 2 cut(s) 103, 3201
BbvI GCAGC 5 cut(s) 188, 1527, 1914, 2696, 3217
BccI CCATC 8 cut(s) 841, 1262, 1730, 1736, 2154, 2218, 2492, 2588
BceAI ACGGC 2 cut(s) 179, 3334
BcgI CGANNNNNNTGC 6 cut(s) 307, 341, 3079, 3113, 3440, 3474
BciT130I CCWGG 4 cut(s) 401, 1161, 2526, 2858
BclI TGATCA 3 cut(s) 249, 1831, 2338
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 6 cut(s) 605, 680, 2178, 2218, 3018, 3709
BfaI CTAG 7 cut(s) 467, 849, 1476, 1889, 3117, 3227, 3530
BfmI CTRYAG 2 cut(s) 738, 1851
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 4 cut(s) 928, 1267, 1330, 3580
BglI GCCNNNNNGGC 2 cut(s) 27, 191
BglII AGATCT 1 cut(s) 3579
BlpI GCTNAGC 1 cut(s) 561
BmcAI AGTACT 2 cut(s) 785, 2420
Bme1390I CCNGG 5 cut(s) 223, 401, 1161, 2526, 2858
Bme18I GGWCC 5 cut(s) 329, 397, 2206, 3413, 3538
BmeRI GACNNNNNGTC 1 cut(s) 50
BmeT110I CYCGRG 3 cut(s) 1235, 2550, 3401
BmgT120I GGNCC 5 cut(s) 329, 397, 2206, 3413, 3538
BmrFI CCNGG 5 cut(s) 223, 401, 1161, 2526, 2858
BmrI ACTGGG 1 cut(s) 1494
BmsI GCATC 8 cut(s) 327, 514, 1348, 1594, 1616, 1816, 2699, 3272
BmuI ACTGGG 1 cut(s) 1494
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 3 cut(s) 771, 1143, 2910
Bpu10I CCTNAGC 6 cut(s) 40, 103, 813, 1914, 2401, 3201
Bpu1102I GCTNAGC 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 705, 3540
BpuMI CCSGG 1 cut(s) 223
BsaBI GATNNNNATC 2 cut(s) 1098, 1830
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 3018
BsaWI WCCGGW 1 cut(s) 1523
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 990, 1020, 1480, 1510
Bsc4I CCNNNNNNNGG 6 cut(s) 1728, 1919, 1945, 1961, 2647, 3074
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 4 cut(s) 754, 957, 1489, 1494
Bse21I CCTNAGG 1 cut(s) 2775
Bse3DI GCAATG 3 cut(s) 361, 997, 3328
Bse8I GATNNNNATC 2 cut(s) 1098, 1830
BseBI CCWGG 4 cut(s) 401, 1161, 2526, 2858
BseJI GATNNNNATC 2 cut(s) 1098, 1830
BseLI CCNNNNNNNGG 6 cut(s) 1728, 1919, 1945, 1961, 2647, 3074
BseMI GCAATG 3 cut(s) 361, 997, 3328
BseNI ACTGG 4 cut(s) 754, 957, 1489, 1494
BseRI GAGGAG 6 cut(s) 91, 1253, 1322, 1349, 1479, 3189
BseSI GKGCMC 2 cut(s) 2571, 2629
BseX3I CGGCCG 2 cut(s) 19, 192
BseXI GCAGC 5 cut(s) 188, 1527, 1914, 2696, 3217
BsgI GTGCAG 3 cut(s) 1775, 2703, 3050
Bsh1236I CGCG 3 cut(s) 48, 291, 1462
Bsh1285I CGRYCG 2 cut(s) 22, 195
BshFI GGCC 6 cut(s) 21, 72, 150, 194, 1935, 2917
BshNI GGYRCC 2 cut(s) 262, 2546
BsiEI CGRYCG 2 cut(s) 22, 195
BsiHKAI GWGCWC 5 cut(s) 829, 2435, 2629, 2846, 3199
BsiHKCI CYCGRG 3 cut(s) 1235, 2550, 3401
BsiSI CCGG 5 cut(s) 18, 191, 222, 266, 1524
BslFI GGGAC 2 cut(s) 410, 3426
BslI CCNNNNNNNGG 6 cut(s) 1728, 1919, 1945, 1961, 2647, 3074
BsmAI GTCTC 6 cut(s) 605, 680, 2178, 2218, 3018, 3709
BsmBI CGTCTC 1 cut(s) 605
BsmFI GGGAC 2 cut(s) 410, 3426
BsmI GAATGC 1 cut(s) 1411
BsnI GGCC 6 cut(s) 21, 72, 150, 194, 1935, 2917
Bso31I GGTCTC 1 cut(s) 3018
BsoBI CYCGRG 3 cut(s) 1235, 2550, 3401
Bsp1407I TGTACA 1 cut(s) 605
Bsp1720I GCTNAGC 1 cut(s) 561
Bsp19I CCATGG 1 cut(s) 1727
BspANI GGCC 6 cut(s) 21, 72, 150, 194, 1935, 2917
BspFNI CGCG 3 cut(s) 48, 291, 1462
BspHI TCATGA 1 cut(s) 3658
BspMI ACCTGC 4 cut(s) 928, 1267, 1330, 3580
BspPI GGATC 4 cut(s) 518, 2269, 2570, 2583
BspQI GCTCTTC 2 cut(s) 195, 426
BspT107I GGYRCC 2 cut(s) 262, 2546
BspTNI GGTCTC 1 cut(s) 3018
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 3 cut(s) 361, 997, 3328
BsrFI RCCGGY 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 605
BsrI ACTGG 4 cut(s) 754, 957, 1489, 1494
BssAI RCCGGY 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 263
BssSI CACGAG 1 cut(s) 3054
BssT1I CCWWGG 5 cut(s) 301, 659, 1727, 1980, 2571
Bst2BI CACGAG 1 cut(s) 3054
Bst2UI CCWGG 4 cut(s) 401, 1161, 2526, 2858
Bst6I CTCTTC 5 cut(s) 195, 273, 426, 804, 3435
BstACI GRCGYC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 192, 2919
BstDSI CCRYGG 2 cut(s) 195, 1727
BstEII GGTNACC 3 cut(s) 410, 1271, 2450
BstFNI CGCG 3 cut(s) 48, 291, 1462
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 7 cut(s) 265, 291, 313, 492, 567, 1462, 3408
BstMAI GTCTC 6 cut(s) 605, 680, 2178, 2218, 3018, 3709
BstMCI CGRYCG 2 cut(s) 22, 195
BstNI CCWGG 4 cut(s) 401, 1161, 2526, 2858
BstNSI RCATGY 1 cut(s) 3263
BstPI GGTNACC 3 cut(s) 410, 1271, 2450
BstSCI CCNGG 5 cut(s) 221, 399, 1159, 2524, 2856
BstSFI CTRYAG 2 cut(s) 738, 1851
BstSLI GKGCMC 2 cut(s) 2571, 2629
BstUI CGCG 3 cut(s) 48, 291, 1462
BstV1I GCAGC 5 cut(s) 188, 1527, 1914, 2696, 3217
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 3 cut(s) 510, 2575, 3579
BstXI CCANNNNNNTGG 3 cut(s) 407, 2594, 3274
BstYI RGATCY 3 cut(s) 510, 2575, 3579
BstZI CGGCCG 2 cut(s) 19, 192
Bsu36I CCTNAGG 1 cut(s) 2775
BsuRI GGCC 6 cut(s) 21, 72, 150, 194, 1935, 2917
BtgI CCRYGG 2 cut(s) 195, 1727
BtsIMutI CAGTG 6 cut(s) 984, 1501, 1507, 1540, 2064, 3327
BveI ACCTGC 4 cut(s) 928, 1267, 1330, 3580
Cac8I GCNNGC 2 cut(s) 192, 2919
CciI TCATGA 1 cut(s) 3658
CfoI GCGC 7 cut(s) 265, 291, 313, 492, 567, 1462, 3408
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 5 cut(s) 329, 397, 2206, 3413, 3538
CpoI CGGWCCG 1 cut(s) 329
CseI GACGC 3 cut(s) 54, 280, 1805
CsiI ACCWGGT 1 cut(s) 2856
Csp6I GTAC 9 cut(s) 4, 606, 784, 965, 2419, 2547, 3293, 3436, 3653
CspCI CAANNNNNGTGG 2 cut(s) 3135, 3170
CspI CGGWCCG 1 cut(s) 329
CviQI GTAC 9 cut(s) 4, 606, 784, 965, 2419, 2547, 3293, 3436, 3653
DinI GGCGCC 1 cut(s) 264
DraI TTTAAA 2 cut(s) 2314, 2934
DrdI GACNNNNNNGTC 1 cut(s) 3701
DriI GACNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 3701
EaeI YGGCCR 3 cut(s) 19, 70, 192
EagI CGGCCG 2 cut(s) 19, 192
Eam1104I CTCTTC 5 cut(s) 195, 273, 426, 804, 3435
Eam1105I GACNNNNNGTC 1 cut(s) 50
EarI CTCTTC 5 cut(s) 195, 273, 426, 804, 3435
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 2433
EclXI CGGCCG 2 cut(s) 19, 192
Eco130I CCWWGG 5 cut(s) 301, 659, 1727, 1980, 2571
Eco24I GRGCYC 5 cut(s) 1128, 1445, 2435, 2769, 3402
Eco31I GGTCTC 1 cut(s) 3018
Eco32I GATATC 1 cut(s) 2025
Eco47I GGWCC 5 cut(s) 329, 397, 2206, 3413, 3538
Eco52I CGGCCG 2 cut(s) 19, 192
Eco53kI GAGCTC 1 cut(s) 2433
Eco57I CTGAAG 5 cut(s) 1697, 1975, 2289, 2832, 3339
Eco81I CCTNAGG 1 cut(s) 2775
Eco88I CYCGRG 3 cut(s) 1235, 2550, 3401
Eco91I GGTNACC 3 cut(s) 410, 1271, 2450
EcoICRI GAGCTC 1 cut(s) 2433
EcoO109I RGGNCCY 2 cut(s) 2206, 3538
EcoO65I GGTNACC 3 cut(s) 410, 1271, 2450
EcoRI GAATTC 1 cut(s) 2867
EcoRII CCWGG 4 cut(s) 399, 1159, 2524, 2856
EcoRV GATATC 1 cut(s) 2025
EcoT14I CCWWGG 5 cut(s) 301, 659, 1727, 1980, 2571
EcoT22I ATGCAT 3 cut(s) 1609, 2445, 3265
EcoT38I GRGCYC 5 cut(s) 1128, 1445, 2435, 2769, 3402
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 5 cut(s) 301, 659, 1727, 1980, 2571
Esp3I CGTCTC 1 cut(s) 605
FalI AAGNNNNNCTT 4 cut(s) 1770, 1802, 1973, 2005
FaqI GGGAC 2 cut(s) 410, 3426
FauI CCCGC 5 cut(s) 195, 323, 587, 2125, 2405
FbaI TGATCA 3 cut(s) 249, 1831, 2338
FblI GTMKAC 1 cut(s) 1950
FokI GGATG 9 cut(s) 1370, 1652, 1709, 1997, 2255, 2510, 2677, 3051, 3250
FriOI GRGCYC 5 cut(s) 1128, 1445, 2435, 2769, 3402
FspBI CTAG 7 cut(s) 467, 849, 1476, 1889, 3117, 3227, 3530
GlaI GCGC 7 cut(s) 264, 290, 312, 491, 566, 1461, 3407
GsuI CTGGAG 3 cut(s) 771, 1143, 2910
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 6 cut(s) 21, 72, 150, 194, 1935, 2917
HapII CCGG 5 cut(s) 18, 191, 222, 266, 1524
HgaI GACGC 3 cut(s) 54, 280, 1805
HhaI GCGC 7 cut(s) 265, 291, 313, 492, 567, 1462, 3408
Hin1I GRCGYC 1 cut(s) 263
Hin6I GCGC 7 cut(s) 263, 289, 311, 490, 565, 1460, 3406
HinP1I GCGC 7 cut(s) 263, 289, 311, 490, 565, 1460, 3406
HincII GTYRAC 2 cut(s) 525, 1795
HindII GTYRAC 2 cut(s) 525, 1795
HindIII AAGCTT 3 cut(s) 65, 1198, 1679
HpaII CCGG 5 cut(s) 18, 191, 222, 266, 1524
HphI GGTGA 9 cut(s) 422, 458, 786, 1442, 1902, 1934, 2609, 2649, 3604
Hpy166II GTNNAC 7 cut(s) 384, 525, 1345, 1795, 1951, 2627, 2720
Hpy8I GTNNAC 7 cut(s) 384, 525, 1345, 1795, 1951, 2627, 2720
Hpy99I CGWCG 3 cut(s) 296, 337, 3612
HpyCH4IV ACGT 2 cut(s) 170, 2884
HpySE526I ACGT 2 cut(s) 170, 2884
Hsp92I GRCGYC 1 cut(s) 263
HspAI GCGC 7 cut(s) 263, 289, 311, 490, 565, 1460, 3406
KasI GGCGCC 1 cut(s) 262
KpnI GGTACC 1 cut(s) 2550
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Ksp22I TGATCA 3 cut(s) 249, 1831, 2338
LguI GCTCTTC 2 cut(s) 195, 426
Lsp1109I GCAGC 5 cut(s) 188, 1527, 1914, 2696, 3217
LweI GCATC 8 cut(s) 327, 514, 1348, 1594, 1616, 1816, 2699, 3272
MabI ACCWGGT 1 cut(s) 2856
MaeI CTAG 7 cut(s) 467, 849, 1476, 1889, 3117, 3227, 3530
MaeII ACGT 2 cut(s) 170, 2884
MbiI CCGCTC 1 cut(s) 99
MfeI CAATTG 2 cut(s) 1365, 3147
MflI RGATCY 3 cut(s) 510, 2575, 3579
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 5 cut(s) 60, 530, 682, 874, 3047
MmeI TCCRAC 3 cut(s) 34, 1311, 3112
Mph1103I ATGCAT 3 cut(s) 1609, 2445, 3265
MroNI GCCGGC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 2812
MslI CAYNNNNRTG 5 cut(s) 257, 391, 873, 1751, 2067
MspA1I CMGCKG 2 cut(s) 547, 1418
MspI CCGG 5 cut(s) 18, 191, 222, 266, 1524
MspR9I CCNGG 5 cut(s) 223, 401, 1161, 2526, 2858
MssI GTTTAAAC 1 cut(s) 2314
MunI CAATTG 2 cut(s) 1365, 3147
Mva1269I GAATGC 1 cut(s) 1411
MvaI CCWGG 4 cut(s) 401, 1161, 2526, 2858
MvnI CGCG 3 cut(s) 48, 291, 1462
NaeI GCCGGC 1 cut(s) 192
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 1727
NgoMIV GCCGGC 1 cut(s) 190
NmeAIII GCCGAG 3 cut(s) 47, 98, 330
NmuCI GTSAC 7 cut(s) 410, 419, 1496, 1508, 1529, 1658, 3051
NsiI ATGCAT 3 cut(s) 1609, 2445, 3265
NspI RCATGY 1 cut(s) 3263
OliI CACNNNNGTG 1 cut(s) 1751
PagI TCATGA 1 cut(s) 3658
PaqCI CACCTGC 1 cut(s) 3580
PciSI GCTCTTC 2 cut(s) 195, 426
PcsI WCGNNNNNNNCGW 1 cut(s) 3047
PctI GAATGC 1 cut(s) 1411
PdiI GCCGGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 2812
PflFI GACNNNGTC 1 cut(s) 2210
PflMI CCANNNNNTGG 2 cut(s) 1728, 1945
PfoI TCCNGGA 1 cut(s) 2524
PleI GAGTC 5 cut(s) 59, 529, 682, 873, 3046
PluTI GGCGCC 1 cut(s) 266
PmeI GTTTAAAC 1 cut(s) 2314
PpsI GAGTC 5 cut(s) 59, 529, 682, 873, 3046
PpuMI RGGWCCY 2 cut(s) 2206, 3538
PsiI TTATAA 1 cut(s) 3576
Psp124BI GAGCTC 1 cut(s) 2435
Psp5II RGGWCCY 2 cut(s) 2206, 3538
Psp6I CCWGG 4 cut(s) 399, 1159, 2524, 2856
PspEI GGTNACC 3 cut(s) 410, 1271, 2450
PspGI CCWGG 4 cut(s) 399, 1159, 2524, 2856
PspPI GGNCC 5 cut(s) 329, 397, 2206, 3413, 3538
PspPPI RGGWCCY 2 cut(s) 2206, 3538
PsuI RGATCY 3 cut(s) 510, 2575, 3579
PsyI GACNNNGTC 1 cut(s) 2210
RsaI GTAC 9 cut(s) 5, 607, 785, 966, 2420, 2548, 3294, 3437, 3654
RsaNI GTAC 9 cut(s) 4, 606, 784, 965, 2419, 2547, 3293, 3436, 3653
RseI CAYNNNNRTG 5 cut(s) 257, 391, 873, 1751, 2067
Rsr2I CGGWCCG 1 cut(s) 329
RsrII CGGWCCG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 2435
SapI GCTCTTC 2 cut(s) 195, 426
Sau96I GGNCC 5 cut(s) 329, 397, 2206, 3413, 3538
ScaI AGTACT 2 cut(s) 785, 2420
SchI GAGTC 5 cut(s) 60, 530, 682, 874, 3047
ScrFI CCNGG 5 cut(s) 223, 401, 1161, 2526, 2858
SexAI ACCWGGT 1 cut(s) 2856
SfaNI GCATC 8 cut(s) 327, 514, 1348, 1594, 1616, 1816, 2699, 3272
SfcI CTRYAG 2 cut(s) 738, 1851
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 5 cut(s) 329, 397, 2206, 3413, 3538
SmiMI CAYNNNNRTG 5 cut(s) 257, 391, 873, 1751, 2067
SmlI CTYRAG 2 cut(s) 720, 3555
SmoI CTYRAG 2 cut(s) 720, 3555
SspDI GGCGCC 1 cut(s) 262
SspI AATATT 3 cut(s) 2251, 3572, 3645
SspMI CTAG 7 cut(s) 467, 849, 1476, 1889, 3117, 3227, 3530
SstI GAGCTC 1 cut(s) 2435
StyD4I CCNGG 5 cut(s) 221, 399, 1159, 2524, 2856
StyI CCWWGG 5 cut(s) 301, 659, 1727, 1980, 2571
TaiI ACGT 2 cut(s) 173, 2887
TaqI TCGA 3 cut(s) 294, 3284, 3610
TaqII GACCGA 2 cut(s) 317, 3089
TatI WGTACW 4 cut(s) 3, 605, 783, 2418
TauI GCSGC 8 cut(s) 33, 62, 120, 153, 182, 185, 1938, 2690
TscAI CASTG 6 cut(s) 984, 1501, 1507, 1540, 2071, 3334
TseFI GTSAC 7 cut(s) 410, 419, 1496, 1508, 1529, 1658, 3051
TseI GCWGC 5 cut(s) 176, 1515, 1927, 2684, 3205
Tsp45I GTSAC 7 cut(s) 410, 419, 1496, 1508, 1529, 1658, 3051
TspDTI ATGAA 7 cut(s) 444, 1086, 1470, 2465, 3141, 3647, 3675
TspGWI ACGGA 5 cut(s) 321, 828, 1058, 3578, 3700
TspRI CASTG 6 cut(s) 984, 1501, 1507, 1540, 2071, 3334
Tth111I GACNNNGTC 1 cut(s) 2210
Van91I CCANNNNNTGG 2 cut(s) 1728, 1945
VneI GTGCAC 1 cut(s) 2625
VpaK11BI GGWCC 5 cut(s) 329, 397, 2206, 3413, 3538
XapI RAATTY 5 cut(s) 667, 2471, 2530, 2867, 2899
XbaI TCTAGA 2 cut(s) 1888, 3116
XceI RCATGY 1 cut(s) 3263
XcmI CCANNNNNNNNNTGG 3 cut(s) 2288, 2644, 3274
XmiI GTMKAC 1 cut(s) 1950
XmnI GAANNNNTTC 1 cut(s) 2812
XspI CTAG 7 cut(s) 467, 849, 1476, 1889, 3117, 3227, 3530
ZrmI AGTACT 2 cut(s) 785, 2420
Zsp2I ATGCAT 3 cut(s) 1609, 2445, 3265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.