Rh2DG444700

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005746
Physical Location & Seq
Reverse (-)
64579509 .. 64588826
9318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG444700.1

Sequence Viewer

Length: 3678 bp
ATGTACGGCGGCTCATCCAAGCACGGCCACGGCCGATTAGGAGGCGGCGCCGGCCGGGGAGCCGGAGCGGCCAAGCTCGGCCGAGCCTCCTTCCCTCCGCCGCACCGCAACTCCGCCGGCCCAGCAGCAGCCAACCGCCTCTCCCTCGGCGGGTCCAACCATCGAGGAGGCCGTAACCCCCCCGCCCCTGCCACGTCAGCCGCCGCCCCGGCCGTGGAGGAGAAGTTCAGCTTAGTGGCCGGCAACAATCCGGTGGCGTTCTCCATGATCATTCGGTTGGTGCCGGACTTGGTCGACGAGATCAGGCGCGTCGAGGCCCAGGGTGGGACCCCCCGCATCAAATTTGACTCCATGACTAATAATCCCAACGGCAATGTTATTGATGTGGGTGGGAAAGAGTTTAGATTTACATGGTCTCGGGATGGTGACCTCTGTGACATATATGAAGAACGTGAAACTGGTGAAGATGGAAATGGTTTGCTTGTTGAATCAGGATGTGCATGGCGCAAAGTGAATGTTCAGCGTATATTAGATGAGTCAACTAAGAATCATGTTAAGAGGCGGTCGGAGGAAGCTGAACGCTTGCACAAATCACGAAAAGCCATTGTGCTAGAACAGAATCCAGCCATGAAGAATCAACTAAAGCAATTTACTGCTGCCACGGCTAATAGTTCATGGAGGAATTTCAAACAGAAGAAGGAGCCTCCCTTTAAAAAGCAGAAAGTTGAACCACCTCAAGCTCCTCCAAAGTCTGCATATAAATCTGGGGTATCATCAGCAACTACTGCAAAGGGTAGACAGTCATCATCACCTCTTCCGTCTACACCTGAGAAGTCTGCATCTCCATTTGGAATGCTAAATATTTCAAAGACTCATACAAGTGCAGATGAAACTATACCCTCTCAAGTCATTATTAAGGACAAACCTGCTCCTAGCTTGGATAAAGAAACCTCAATCAGGACTAGTGCAGCATTGGAAACTGGCAAAGGCAATGGTCGAGCTAAGCTAACAGATTTGCAGAGTTTGTTGATTACACTGCTCATGGAGAATCCCAAGGGGATGAGCTTAAAGGCTTTGGAGAAAGCTATTGGAGATTCATTTCCCAACTCTCTGAAAAAAATTGAGTCCATTCTTAAGAAGATCGCAAATTCCCAAGCTCCAGGGAAGTATCTCTTGAAGCCAGGAGTGGAGTTAGAAAGCTTCAAGAAACCTTTGTTTGAGTCTGGAAGTTCCCCAGAAGAGAACCTTCGCCAGACTCCTGCTACGGATAACGTCTGTGATCAAAGGCCTGCTCAAATACCAGAGTTTAAGGAGAAGGTTTCTTCCAGTGAAATGGAGGAACAGGGCCAGGGACAATTGAATGCTACAGTTGGAGAAGAACCACGGGTATTCCAAAAAATTGATAACCAACAGCAGTCACCTGATCTTTTTGGTGAAAAAAGGGCCTCTGACAACAGTGAAGCCCAAATAGGTAGTTCTAGTTCTAGTGAAAGTGGAAGTGACAGTGACAGTGAAAGTGACAGCAGTGATTCCGGAAGTGACAGTGGAAGTCCTAGCAGAAGTAAAAGCCCAAAAGGAAGTGGGAGTGGGAGTAGCAGTGATAGTGAAAGTGATGTGTCTTCTAATAGCAAGGAGGTTTCTGATGAGGATGTGAACATTATGAGTGATGATGATAAAGAGCCCAAACATCAAACACAAGCCTCTGAAGGTGCTTTGCCCATTCCATGGGAGACTCCCGATGCCAGGCCTGTGCAGAGTGGGAATGATGACAAGCAAGATGATCTTGAATCTGATGCAATTGATATTGAAACTGTGGAACAGGATGCTGAATTGGCTGTTGTTAGTAGCTCCACTCCTAATAAATGTGATCAACCTGTTGATGAAAAAAAACCTTCTTCACCTGAGCATGTTGAGCATCATGACCGCCAGATTCTTGTAGACAGTTTGTTTGGAAAGACTGCAGACAAGGATGACTTCAGGTATGAGCAGTCTGATAGCTCTGAGAGGATGACTAAAGGTAAATCCAAAAGAGGTTTGGAGGTAAAGCACTCTGATGAAAAATCTGAACGCAGAAAAAGGTCAAAAACGGAAAACTCACCACAACCTCCTGCTTCTGTGGGTAAGGGTGTTCAATTTTCAGAGGATTATCATAATTTGTCTCCTGATAGACTCATTGAAGGCTCTTATAAGGGCCCTGTATCTCAAACGCTGAATAAAGCTGATAGGGATGGGAATACTGAGTTTGGCTCTCAAAAGGGCTACAATCAAGCAGTTTCTGGAAGATATAGCTCGGAGTCTAAACAATTAAGTCGGAAGTCTTATGATCATAGTGTACAAGCAAAGGCTCCTGATCAAGGTGAAAGACCTGATAGATATTCCGAGAGCTTGGGCCATGGTCTACAGTACTCTGAAAAGAGCTCTCATGTGCATGAAGGCTTTCCCCTGCGAAAAGATAATGTTCATAGTAGTAGTCAAAAGGACGGTTATGTTAATGAAAAGAAGGTTTCAAGAAATTCCAAGGAAGGTGGTGGCCGAGGCAAACAATCAGTGCCCTTGGACTCCCACTACCAGAAACATGGTGACGTGGCTGGCAAAATCAAGGAAGATAGACAGGTTTCAAGTATGTTCGTCAGTTCTTCGCCGAAGGAAAACAGGAATGGAGCCGACAGATCCCCAGTTGTTAATGGTAGAGGTAGTAAACTCCAAAGAGAGGTTTCAGAATTGGAGTTGGGTGAACTTCGTGAGGCTGTGCCCGAGGAAACAACAGTTAAGAAGCAATTTGAGAGAAAAAGTTCATTTAAGCAGTCAGAAAACAAACTGGGCACCAGGGATACCTGGGCTTCGGACTTCAGTAAATCAAAACCTGCAGGAAAGCCATCCTCACCAGATTTAAACTTGAAGTTTCCTAGTAATGCAGAAGGCTTAGTTAAAAAAAGGAACTACGAAGATCGTATTGAGGATTTAACGGGGTCTCAACAGAGAGCTCTGCAATCTCAGTCACTGCACCTTTCACGAGTAGATAATTCTGATGTGGGGCGCCCATTCAGCAGATCAGCAGATAACAGTAGTAAATCAACACAAAATGAAGTTGGGGGCAGACAAGGGATCAGTTTGGATGGCTATGGAGAAAGCAATAAGAAAGCACCTCCTAGGGCTTCTCAGCACCATGACTCTAAACGAGGGCCACTGTCCCACACCAATAAAGAAAGTAAAAGACTTTCATCTAGTACGATGATGGAACAGACTGATGTACGAAAGGATTCAATGTTGGCAGAGGGCACCGACAGTGATAGAAAAAGAAGGGATTCTTCTTCTGATGAAAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCTGAGCTCAAGGGACCAATAAAAGATTTCTCTCAGTATAAGGAGTATGTGCAAGAATATCATGATAAGTATGATAGCTACTGCTCGTTGAACAAGATCTTAGAGAGTTACAGGAATGAGTTCCTAAAGCTAGGGAAGGACCTTGAACTTGCTTCGGGCACAGAGAGATATTATAACATCTTGGACCAGCTGAAGGAGTCCTATCGTCAGTGTGGATCGAGACATAAGAGGCTCAAAAAGATATTTGTGGTGCTTCATGAGGAACTGAAGCACCTTAAGCAAAGGATCAAAGAGTTTGCACTTCCATACACGAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1225

Amino Acids

134.89

Weight (kDa)

8.2

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1124 - 1219 4.4e-19 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2187, 3531
Acc36I ACCTGC 2 cut(s) 934, 2872
AccB1I GGYRCC 5 cut(s) 47, 280, 2822, 3036, 3278
AccB7I CCANNNNNTGG 1 cut(s) 1725
AccBSI CCGCTC 1 cut(s) 68
AccI GTMKAC 5 cut(s) 294, 796, 821, 1938, 2398
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 1532
AclWI GGATC 4 cut(s) 2664, 3113, 3580, 3650
AcoI YGGCCR 8 cut(s) 25, 31, 52, 69, 79, 210, 237, 2530
AcsI RAATTY 4 cut(s) 341, 682, 1147, 2512
AcuI CTGAAG 5 cut(s) 1725, 1960, 2833, 3569, 3644
AcyI GRCGYC 2 cut(s) 48, 3037
AfaI GTAC 5 cut(s) 5, 2334, 2405, 3229, 3252
AfiI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 957, 1725, 1743, 2354, 2710, 3550
AflII CTTAAG 2 cut(s) 1133, 3632
AhlI ACTAGT 1 cut(s) 962
AjiI CACGTC 2 cut(s) 195, 2584
AjnI CCWGG 7 cut(s) 318, 1159, 1180, 1347, 1742, 2825, 2834
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
Alw21I GWGCWC 3 cut(s) 2420, 2986, 3366
Alw26I GTCTC 5 cut(s) 420, 1724, 2163, 2976, 3571
AlwI GGATC 4 cut(s) 2664, 3113, 3580, 3650
AlwNI CAGNNNCTG 2 cut(s) 2276, 3001
Ama87I CYCGRG 2 cut(s) 417, 2753
Aor13HI TCCGGA 1 cut(s) 1532
ApaI GGGCCC 1 cut(s) 2195
ApeKI GCWGC 4 cut(s) 125, 128, 656, 968
ApoI RAATTY 4 cut(s) 341, 682, 1147, 2512
ArsI GACNNNNNNTTYG 2 cut(s) 1931, 1963
Asp700I GAANNNNTTC 5 cut(s) 2436, 2791, 3259, 3304, 3476
AspA2I CCTAGG 1 cut(s) 3149
AspLEI GCGC 4 cut(s) 50, 309, 507, 3039
AsuC2I CCSGG 2 cut(s) 56, 209
AvaI CYCGRG 2 cut(s) 417, 2753
AvaII GGWCC 5 cut(s) 153, 327, 3371, 3496, 3541
AvrII CCTAGG 1 cut(s) 3149
BaeGI GKGCMC 6 cut(s) 2195, 2553, 2754, 2825, 3281, 3518
BanI GGYRCC 5 cut(s) 47, 280, 2822, 3036, 3278
BanII GRGCYC 5 cut(s) 1683, 2195, 2420, 2986, 3366
BauI CACGAG 1 cut(s) 3012
BbsI GAAGAC 1 cut(s) 1611
Bbv12I GWGCWC 3 cut(s) 2420, 2986, 3366
BbvI GCAGC 4 cut(s) 137, 140, 643, 980
BccI CCATC 7 cut(s) 168, 416, 461, 2222, 2884, 3110, 3229
BceAI ACGGC 7 cut(s) 22, 40, 46, 156, 197, 385, 678
BciT130I CCWGG 7 cut(s) 320, 1161, 1182, 1349, 1744, 2827, 2836
BciVI GTATCC 1 cut(s) 2824
BclI TGATCA 5 cut(s) 267, 1279, 1867, 2323, 2350
BcnI CCSGG 2 cut(s) 56, 209
BcoDI GTCTC 5 cut(s) 420, 1724, 2163, 2976, 3571
BcuI ACTAGT 1 cut(s) 962
BfmI CTRYAG 4 cut(s) 1365, 1959, 2399, 2865
BfoI RGCGCY 2 cut(s) 51, 3040
BfrI CTTAAG 2 cut(s) 1133, 3632
BfuAI ACCTGC 2 cut(s) 934, 2872
BfuI GTATCC 1 cut(s) 2824
BglI GCCNNNNNGGC 2 cut(s) 68, 209
BglII AGATCT 1 cut(s) 3453
BlnI CCTAGG 1 cut(s) 3149
BlpI GCTNAGC 1 cut(s) 1002
BmcAI AGTACT 1 cut(s) 2405
Bme1390I CCNGG 9 cut(s) 56, 209, 320, 1161, 1182, 1349, 1744, 2827, 2836
Bme18I GGWCC 5 cut(s) 153, 327, 3371, 3496, 3541
BmeT110I CYCGRG 2 cut(s) 417, 2753
BmgBI CACGTC 2 cut(s) 195, 2584
BmrFI CCNGG 9 cut(s) 56, 209, 320, 1161, 1182, 1349, 1744, 2827, 2836
BmrI ACTGGG 2 cut(s) 2669, 2828
BmsI GCATC 6 cut(s) 345, 848, 1729, 1783, 1813, 1924
BmuI ACTGGG 2 cut(s) 2669, 2828
BpiI GAAGAC 1 cut(s) 1611
BplI GAGNNNNNCTC 2 cut(s) 2231, 2263
BpmI CTGGAG 1 cut(s) 1143
Bpu10I CCTNAGC 2 cut(s) 1902, 3360
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 3 cut(s) 720, 888, 3350
BpuMI CCSGG 2 cut(s) 56, 209
BsaHI GRCGYC 2 cut(s) 48, 3037
BsaI GGTCTC 2 cut(s) 420, 2976
BsaWI WCCGGW 2 cut(s) 250, 1532
Bsc4I CCNNNNNNNGG 9 cut(s) 150, 214, 324, 957, 1725, 1743, 2354, 2710, 3550
Bse118I RCCGGY 3 cut(s) 50, 116, 239
Bse1I ACTGG 5 cut(s) 463, 985, 1326, 2675, 2823
Bse3DI GCAATG 2 cut(s) 379, 997
BseAI TCCGGA 1 cut(s) 1532
BseBI CCWGG 7 cut(s) 320, 1161, 1182, 1349, 1744, 2827, 2836
BseLI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 957, 1725, 1743, 2354, 2710, 3550
BseMI GCAATG 2 cut(s) 379, 997
BseMII CTCAG 8 cut(s) 819, 1893, 1992, 2229, 3008, 3173, 3351, 3404
BseNI ACTGG 5 cut(s) 463, 985, 1326, 2675, 2823
BseRI GAGGAG 3 cut(s) 180, 233, 732
BseSI GKGCMC 6 cut(s) 2195, 2553, 2754, 2825, 3281, 3518
BseX3I CGGCCG 4 cut(s) 31, 52, 79, 210
BseXI GCAGC 4 cut(s) 137, 140, 643, 980
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 4 cut(s) 903, 987, 1772, 2987
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BshNI GGYRCC 5 cut(s) 47, 280, 2822, 3036, 3278
BsiEI CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BsiHKAI GWGCWC 3 cut(s) 2420, 2986, 3366
BsiHKCI CYCGRG 2 cut(s) 417, 2753
BsiSI CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1533
BslFI GGGAC 4 cut(s) 340, 1365, 3175, 3384
BslI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 957, 1725, 1743, 2354, 2710, 3550
BsmAI GTCTC 5 cut(s) 420, 1724, 2163, 2976, 3571
BsmFI GGGAC 4 cut(s) 340, 1365, 3175, 3384
BsmI GAATGC 2 cut(s) 858, 1366
Bso31I GGTCTC 2 cut(s) 420, 2976
BsoBI CYCGRG 2 cut(s) 417, 2753
Bsp120I GGGCCC 1 cut(s) 2191
Bsp13I TCCGGA 1 cut(s) 1532
Bsp1407I TGTACA 1 cut(s) 2332
Bsp1720I GCTNAGC 1 cut(s) 1002
Bsp19I CCATGG 2 cut(s) 1724, 2392
BspCNI CTCAG 8 cut(s) 820, 1894, 1993, 2230, 3007, 3172, 3352, 3403
BspEI TCCGGA 1 cut(s) 1532
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 3 cut(s) 1918, 3418, 3613
BspMAI CTGCAG 2 cut(s) 1963, 2869
BspMI ACCTGC 2 cut(s) 934, 2872
BspPI GGATC 4 cut(s) 2664, 3113, 3580, 3650
BspT107I GGYRCC 5 cut(s) 47, 280, 2822, 3036, 3278
BspTI CTTAAG 2 cut(s) 1133, 3632
BspTNI GGTCTC 2 cut(s) 420, 2976
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 379, 997
BsrFI RCCGGY 3 cut(s) 50, 116, 239
BsrGI TGTACA 1 cut(s) 2332
BsrI ACTGG 5 cut(s) 463, 985, 1326, 2675, 2823
BssAI RCCGGY 3 cut(s) 50, 116, 239
BssNI GRCGYC 2 cut(s) 48, 3037
BssSI CACGAG 1 cut(s) 3012
BssT1I CCWWGG 6 cut(s) 1053, 1724, 2392, 2517, 2553, 3149
Bst2BI CACGAG 1 cut(s) 3012
Bst2UI CCWGG 7 cut(s) 320, 1161, 1182, 1349, 1744, 2827, 2836
Bst6I CTCTTC 2 cut(s) 819, 1233
BstACI GRCGYC 2 cut(s) 48, 3037
BstAFI CTTAAG 2 cut(s) 1133, 3632
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 2332
BstC8I GCNNGC 6 cut(s) 52, 118, 241, 584, 1290, 2590
BstDSI CCRYGG 6 cut(s) 28, 213, 660, 1382, 1724, 2392
BstEII GGTNACC 1 cut(s) 425
BstENI CCTNNNNNAGG 2 cut(s) 955, 2352
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 2 cut(s) 51, 3040
BstHHI GCGC 4 cut(s) 50, 309, 507, 3039
BstMAI GTCTC 5 cut(s) 420, 1724, 2163, 2976, 3571
BstMCI CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BstNI CCWGG 7 cut(s) 320, 1161, 1182, 1349, 1744, 2827, 2836
BstNSI RCATGY 1 cut(s) 1910
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 9 cut(s) 54, 207, 318, 1159, 1180, 1347, 1742, 2825, 2834
BstSFI CTRYAG 4 cut(s) 1365, 1959, 2399, 2865
BstSLI GKGCMC 6 cut(s) 2195, 2553, 2754, 2825, 3281, 3518
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 137, 140, 643, 980
BstV2I GAAGAC 1 cut(s) 1611
BstX2I RGATCY 2 cut(s) 2669, 3453
BstXI CCANNNNNNTGG 2 cut(s) 1333, 2576
BstYI RGATCY 2 cut(s) 2669, 3453
BstZI CGGCCG 4 cut(s) 31, 52, 79, 210
BsuI GTATCC 1 cut(s) 2824
BtgI CCRYGG 6 cut(s) 28, 213, 660, 1382, 1724, 2392
BtrI CACGTC 2 cut(s) 195, 2584
BtsI GCAGTG 4 cut(s) 1034, 1531, 1603, 2999
BveI ACCTGC 2 cut(s) 934, 2872
Cac8I GCNNGC 6 cut(s) 52, 118, 241, 584, 1290, 2590
CaiI CAGNNNCTG 2 cut(s) 2276, 3001
CciI TCATGA 3 cut(s) 1918, 3418, 3613
CfoI GCGC 4 cut(s) 50, 309, 507, 3039
Cfr10I RCCGGY 3 cut(s) 50, 116, 239
CseI GACGC 1 cut(s) 298
Csp6I GTAC 5 cut(s) 4, 2333, 2404, 3228, 3251
CspCI CAANNNNNGTGG 2 cut(s) 2506, 2541
CviQI GTAC 5 cut(s) 4, 2333, 2404, 3228, 3251
DinI GGCGCC 2 cut(s) 49, 3038
DraI TTTAAA 2 cut(s) 712, 2892
EaeI YGGCCR 8 cut(s) 25, 31, 52, 69, 79, 210, 237, 2530
EagI CGGCCG 4 cut(s) 31, 52, 79, 210
Eam1104I CTCTTC 2 cut(s) 819, 1233
EarI CTCTTC 2 cut(s) 819, 1233
EciI GGCGGA 2 cut(s) 87, 103
Ecl136II GAGCTC 3 cut(s) 2418, 2984, 3364
EclXI CGGCCG 4 cut(s) 31, 52, 79, 210
Eco130I CCWWGG 6 cut(s) 1053, 1724, 2392, 2517, 2553, 3149
Eco147I AGGCCT 2 cut(s) 1288, 1747
Eco24I GRGCYC 5 cut(s) 1683, 2195, 2420, 2986, 3366
Eco31I GGTCTC 2 cut(s) 420, 2976
Eco47I GGWCC 5 cut(s) 153, 327, 3371, 3496, 3541
Eco52I CGGCCG 4 cut(s) 31, 52, 79, 210
Eco53kI GAGCTC 3 cut(s) 2418, 2984, 3364
Eco57I CTGAAG 5 cut(s) 1725, 1960, 2833, 3569, 3644
Eco88I CYCGRG 2 cut(s) 417, 2753
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 3 cut(s) 2418, 2984, 3364
EcoNI CCTNNNNNAGG 2 cut(s) 955, 2352
EcoO109I RGGNCCY 5 cut(s) 327, 1443, 2191, 2192, 3496
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 7 cut(s) 318, 1159, 1180, 1347, 1742, 2825, 2834
EcoT14I CCWWGG 6 cut(s) 1053, 1724, 2392, 2517, 2553, 3149
EcoT38I GRGCYC 5 cut(s) 1683, 2195, 2420, 2986, 3366
EgeI GGCGCC 2 cut(s) 49, 3038
EheI GGCGCC 2 cut(s) 49, 3038
ErhI CCWWGG 6 cut(s) 1053, 1724, 2392, 2517, 2553, 3149
FaqI GGGAC 4 cut(s) 340, 1365, 3175, 3384
FauI CCCGC 3 cut(s) 143, 190, 341
FbaI TGATCA 5 cut(s) 267, 1279, 1867, 2323, 2350
FblI GTMKAC 5 cut(s) 294, 796, 821, 1938, 2398
FriOI GRGCYC 5 cut(s) 1683, 2195, 2420, 2986, 3366
GlaI GCGC 4 cut(s) 49, 308, 506, 3038
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 1143
HaeII RGCGCY 2 cut(s) 51, 3040
HapII CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1533
HgaI GACGC 1 cut(s) 298
HhaI GCGC 4 cut(s) 50, 309, 507, 3039
Hin1I GRCGYC 2 cut(s) 48, 3037
Hin6I GCGC 4 cut(s) 48, 307, 505, 3037
HinP1I GCGC 4 cut(s) 48, 307, 505, 3037
HincII GTYRAC 2 cut(s) 295, 540
HindII GTYRAC 2 cut(s) 295, 540
HindIII AAGCTT 1 cut(s) 1198
HpaII CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1533
Hpy99I CGWCG 2 cut(s) 299, 314
HpyCH4IV ACGT 4 cut(s) 194, 451, 1272, 2583
HpySE526I ACGT 4 cut(s) 194, 451, 1272, 2583
Hsp92I GRCGYC 2 cut(s) 48, 3037
HspAI GCGC 4 cut(s) 48, 307, 505, 3037
KasI GGCGCC 2 cut(s) 47, 3036
KflI GGGWCCC 1 cut(s) 327
Kpn2I TCCGGA 1 cut(s) 1532
KroI GCCGGC 3 cut(s) 50, 116, 239
KroNI GCCGGC 3 cut(s) 52, 118, 241
Ksp22I TGATCA 5 cut(s) 267, 1279, 1867, 2323, 2350
LmnI GCTCC 9 cut(s) 59, 65, 700, 745, 934, 1162, 1853, 2350, 2660
Lsp1109I GCAGC 4 cut(s) 137, 140, 643, 980
LweI GCATC 6 cut(s) 345, 848, 1729, 1783, 1813, 1924
MaeII ACGT 4 cut(s) 194, 451, 1272, 2583
MbiI CCGCTC 1 cut(s) 68
MfeI CAATTG 2 cut(s) 1355, 1797
MflI RGATCY 2 cut(s) 2669, 3453
Mly113I GGCGCC 2 cut(s) 48, 3037
MmeI TCCRAC 4 cut(s) 180, 546, 1351, 2291
MroI TCCGGA 1 cut(s) 1532
MroNI GCCGGC 3 cut(s) 50, 116, 239
MroXI GAANNNNTTC 5 cut(s) 2436, 2791, 3259, 3304, 3476
MslI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
MspA1I CMGCKG 1 cut(s) 3547
MspCI CTTAAG 2 cut(s) 1133, 3632
MspI CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1533
MspR9I CCNGG 9 cut(s) 56, 209, 320, 1161, 1182, 1349, 1744, 2827, 2836
MunI CAATTG 2 cut(s) 1355, 1797
Mva1269I GAATGC 2 cut(s) 858, 1366
MvaI CCWGG 7 cut(s) 320, 1161, 1182, 1349, 1744, 2827, 2836
MvnI CGCG 1 cut(s) 309
NaeI GCCGGC 3 cut(s) 52, 118, 241
NarI GGCGCC 2 cut(s) 48, 3037
NciI CCSGG 2 cut(s) 56, 209
NcoI CCATGG 2 cut(s) 1724, 2392
NgoMIV GCCGGC 3 cut(s) 50, 116, 239
NmeAIII GCCGAG 4 cut(s) 57, 107, 126, 2558
NmuCI GTSAC 9 cut(s) 425, 434, 1416, 1499, 1505, 1517, 1538, 2579, 2997
NspI RCATGY 1 cut(s) 1910
PagI TCATGA 3 cut(s) 1918, 3418, 3613
PasI CCCWGGG 1 cut(s) 319
PceI AGGCCT 2 cut(s) 1288, 1747
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PctI GAATGC 2 cut(s) 858, 1366
PdiI GCCGGC 3 cut(s) 52, 118, 241
PdmI GAANNNNTTC 5 cut(s) 2436, 2791, 3259, 3304, 3476
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 1725
PluTI GGCGCC 2 cut(s) 51, 3040
PpuMI RGGWCCY 2 cut(s) 327, 3496
PsiI TTATAA 2 cut(s) 2187, 3531
Psp124BI GAGCTC 3 cut(s) 2420, 2986, 3366
Psp5II RGGWCCY 2 cut(s) 327, 3496
Psp6I CCWGG 7 cut(s) 318, 1159, 1180, 1347, 1742, 2825, 2834
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 7 cut(s) 318, 1159, 1180, 1347, 1742, 2825, 2834
PspOMI GGGCCC 1 cut(s) 2191
PspPPI RGGWCCY 2 cut(s) 327, 3496
PsrI GAACNNNNNNTAC 2 cut(s) 1465, 1497
PstI CTGCAG 2 cut(s) 1963, 2869
PstNI CAGNNNCTG 2 cut(s) 2276, 3001
PsuI RGATCY 2 cut(s) 2669, 3453
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 3547
RsaI GTAC 5 cut(s) 5, 2334, 2405, 3229, 3252
RsaNI GTAC 5 cut(s) 4, 2333, 2404, 3228, 3251
RseI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
SacI GAGCTC 3 cut(s) 2420, 2986, 3366
SalI GTCGAC 1 cut(s) 293
SbfI CCTGCAGG 1 cut(s) 2869
ScaI AGTACT 1 cut(s) 2405
ScrFI CCNGG 9 cut(s) 56, 209, 320, 1161, 1182, 1349, 1744, 2827, 2836
SdaI CCTGCAGG 1 cut(s) 2869
SfaNI GCATC 6 cut(s) 345, 848, 1729, 1783, 1813, 1924
SfcI CTRYAG 4 cut(s) 1365, 1959, 2399, 2865
SfoI GGCGCC 2 cut(s) 49, 3038
SinI GGWCC 5 cut(s) 153, 327, 3371, 3496, 3541
SmiMI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
SmlI CTYRAG 5 cut(s) 735, 903, 1133, 3365, 3632
SmoI CTYRAG 5 cut(s) 735, 903, 1133, 3365, 3632
SpeI ACTAGT 1 cut(s) 962
Sse8387I CCTGCAGG 1 cut(s) 2869
SseBI AGGCCT 2 cut(s) 1288, 1747
SspDI GGCGCC 2 cut(s) 47, 3036
SspI AATATT 1 cut(s) 862
SstI GAGCTC 3 cut(s) 2420, 2986, 3366
StuI AGGCCT 2 cut(s) 1288, 1747
StyD4I CCNGG 9 cut(s) 54, 207, 318, 1159, 1180, 1347, 1742, 2825, 2834
StyI CCWWGG 6 cut(s) 1053, 1724, 2392, 2517, 2553, 3149
TaiI ACGT 4 cut(s) 197, 454, 1275, 2586
TaqI TCGA 5 cut(s) 163, 294, 312, 997, 3575
TatI WGTACW 2 cut(s) 2332, 2403
TauI GCSGC 6 cut(s) 12, 48, 71, 103, 203, 206
TseFI GTSAC 9 cut(s) 425, 434, 1416, 1499, 1505, 1517, 1538, 2579, 2997
TseI GCWGC 4 cut(s) 125, 128, 656, 968
Tsp45I GTSAC 9 cut(s) 425, 434, 1416, 1499, 1505, 1517, 1538, 2579, 2997
TspGWI ACGGA 3 cut(s) 807, 1280, 2102
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 1725
Vha464I CTTAAG 2 cut(s) 1133, 3632
VpaK11BI GGWCC 5 cut(s) 153, 327, 3371, 3496, 3541
XagI CCTNNNNNAGG 2 cut(s) 955, 2352
XapI RAATTY 4 cut(s) 341, 682, 1147, 2512
XceI RCATGY 1 cut(s) 1910
XcmI CCANNNNNNNNNTGG 1 cut(s) 2032
XmaJI CCTAGG 1 cut(s) 3149
XmiI GTMKAC 5 cut(s) 294, 796, 821, 1938, 2398
XmnI GAANNNNTTC 5 cut(s) 2436, 2791, 3259, 3304, 3476
ZrmI AGTACT 1 cut(s) 2405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.