RLG00000019962

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005746
Physical Location & Seq
Reverse (-)
59269264 .. 59278544
9281 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019962

Sequence Viewer

Length: 3678 bp
ATGTACGGCGGCTCATCCAAGCACGGCCGATTAGGCGGCGGCGCCGGCCGGGGAGCCGGAGCCGCCAAGCTCGGCCGAGCCTCCTTCCCTCCGCCGCACCGCAACTCCGCCGCCCCAGCAGCAGCCAACCGCCTCTCCCTCGGCGGCTCCAACCATCGAGGAGGCCGCAACCCCCCCGCCCCTGCCAAGTCAGCCGCCGCCCCGGCCGTGGAGGAGAAGTTCAGCTTAGTCGCCGGCAACAATCCGGTGGCGTTCTCCATGATCATTCGATTGGTGCCGGACTTGGTCGACGAGATCAGGCGCGTCGAGGCCCAAGGTGGGACCCCCCGCATCAAATTTGATTCCATGACTAATAATCCCAACGGCAATGTTATTGATGTGGGTGGGAAAGAGTTTAGATTTACATGGTCTCGGGATGGTGACCTCTGTGACATATATGAAGAACGTGAAACTGGTGAAGATGGAAATGGTTTGCTTGTTGAATCAGGATGTGCATGGCGCAAAGTGAATGTTCAGCGTATATTAGATGAGTCAACTAAGAATCATGTTAAGAGGCGGTCAGAGGAAGCTGAACGCTTGCACAAATCACGAAAAGCCATTGTGCTAGAACAGAATCCAGCCATGAAGAATCAACTAAAGCAATTTACTGCTGCCACGGCTAATAGTTCATGGAGGAATTTCAAACAGAAGAAAGAGCCTCCCTTTAAAAAGCAGAAAGTTGAACCACCTCAAGTTTCAGCTCCTCCAAAGTCTGCATATAAATCTGGGGTATCATCAGCAACTACTGCAAAGGGTAGACAGTCATCATCACCTCTTCCGTCTACACCTGAGAAGTCTGCATCTCCATTTGGAATGCTAAATATTTCAAAGACTCATACAAGTGCAGATGAAACTATACCTTCTCAAGTCATTATTAAGGACAAACCTGCTCCTAGCTTGGATAAAGAAACCTCAATCAGGACTAGTGCAGCATGGGAAACTGGCAAAGGCAATGGTCGAGCTAAGCCAACAGATTTGCAGAGTTTGTTGATTACACTGCTCATGGAGAATCCCAAGGGGATGAGCTTAAAGGCTTTGGAGAAAGCTATTGGAGATTCATTTCCTAACTCTGTGAAAAAAATTGAGCCCATTCTTAAGAAGATCGCAAATTCCCAAGCTCCAGGGAAGTATCTCTTGAAGCCAGGAGTGGAGTTAGAAAGCTTCAAGAAACCTTTGTTAGAATCTGGAAGTTCCCCAGAAGAGAACCTTCGCCGGACTCCTGCTACGGATAACGTCTGTGATCAAAAGCCTGCTCAAATACCAGAGTTTAAGGAGAAGGTTTCTTCCAGCGAAATGGAGGAACAGGGCCAGGGACAATTGAATGTTACAGTTGGAGAAGAACCACAGGTATTCCAAAAAATTGATAACCAACAGCAGTCACCTGATCTTTTTGGTGAAAAAAGGGCCTCTGACAACAGTGAAGCCCAAATAGGTAGTTCTAGTTCTAGTGAAAGTGGAAGTGACAGTGACAGTGAAAGTGACAGCAGTGATTCCGGAAGTGACAGTGGAAGTCCTAGCAGAAGTAAAAGCCCAAAAGGAAGTGGGAGTGGGAGTAGCAGCGATAGTGAAAGTGATGTGTCTTCTAATAGCAAGGAGGTTTCTGATGAGGATGTGAACATTATGAGTGATGATGATAAAGAGCCCAAACATCAAGCACAAGCCTCTGAAGCTGCTTTGCCCATTCCATGGGAAACTCCTGATGGCAGGCCTGTACAGAGTGGGAATGATGACAAGCAAGATGATCTTGAATCTGATGCAATTGATATTGAAACTGTGGAACAGGATGCTGAATTGGCTGTTGTTAGTAGCTCCACTCCTAATAAATGTGATCAACCTGTTGATGAAACAAAACCTTCTTCACCTGAGCATGTTGAGCATCATGACCGCCAGATTCTTGTAGACAGTTTGTTTGGAAAGACTGCAGACAAGGATGACTTCAGGTATGAGCAGTCTGATAGCTCTGAGAGGATGACTAAAGGTAAATCCAAAAGAGGTTTGGAGGTAAAGCACTCTGATGAAAAATCTGAACGCCGAAAAAGGTCAAAAACGGAAAACTCACCACAACCTCCTGCTTCTGTGGGTAAGGGTGTTCAATTTTCAGAGGATTATCATAATTTGTCTCCTGATAGACTCATTGAAGGCTCTTATAAGGGCCCTGTATCTCAAACGCTGAATAAAGCTGATAGGGATGGGAATACTGAGTTAGGCTCTCAAAAGGGCTACAATCAAGCAGTTTCTGGAAGATATAGCTCTGAGTCTAAACAATTAAGTCGGAAGTCTTATGATCATAGTGCACAAGCAAAGGCTCCTGATCAGGGTGAAAGACCTGATAGATATTCCGAGAGCTTGGGCCATGGTCTGCAGTACTCTGAAAAGAGCTGTCATGTGCATGAAGGCTTTCCCCTGCGAAAAGATAATGTTCATAGTAGTAGTCAAAAGGACGGTTATGCTAATGAAAAGAAGGTTTCAAGAAATTCCAAGGAAGGTGGTGGCCGAGGCAAACAATCAGTGCCCTTGGACTCCCACTACCAGAAACATGGTGACGTGGCTGGCAAAATCAAGGAAGATAGACAGGTTTCAAGTATGTTCTTCAGTTCTTCGCCGAAGGAAAACAGGAATGGAGCCGACAGATCCCCAGTTGTTAATGGTAGAGCTAGTAAACTCCAAAGAGAGGTTTCGGAATTGGAGTTGGGCGAACTTCGTGAGGCCGTGCCCGAGGAAACAACAGTTAAGAAGCAATTTGAGAGAAAAAGTTCATTTAAGCAGTCAGAAAACAAACTGGGCACCAGGGATACCTGGGCTTCAGACTTCAGTAAATCAAAACCTGCAGGAAAGCCATCCTCACCAGATTTAAACTTGAAGTTTCCTAGTAATGCAGAAGGCTTAGTTAAAAAAAGGAACTACGAAGATCGTATTGAGGATTTAACGGGGTCGCAACAGAGAGCTCTGCAATCTCAGTCACTGCACCTTTCACGAGTAGATAATTCTGATGTGGGGCGCCCATTCAGCAGATCAGCAGATAACAGTAGTAAATCGACACAAAATGAAGTTGGGGGCAGACAAGGGATCAGTTTGGATGGCTATGGAGAAAGCAATAAGAAAGCACCTCCGAGGGCTTCTCAGCACCATGACTCTAAACGAGGGCCACTGTCCAACACCAATAAAGAAAGTAAAAGACTTGCCTCTAGTACGATGATGGAACAGACTGATGTACGAAAGGATTCAATGTTGGCAGAGGGCACCGACAGTGATAGAAAAAGAAGGGATTCTTCTTCTGATGAGAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCTGAGCTCAAGGGACCAATAAAAGATTTCTCTCAGTACAAGGAGTATGTGCAAGAATATCATGATAAGTATGATAGCTACTGCTCGTTGAACAAGATCTTAGAGAGTTACAGGAATGAGTTTTTAAAGCTAGGGAAGGACCTTGAATTTGCTTCGGGCACAGAGAGATATTATAACATCTTGGACCAGCTGAAGGAGTCCTATCGTCAGTGTGGATCGAGACATAAGAGGCTCAAAAAGATATTTGTGGTGCTTCATGAGGAACTAAAGCACCTTAAGCAAAGGATCAAAGAGTTTGCACTCCCATACACGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1226

Amino Acids

134.86

Weight (kDa)

8.18

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1124 - 1219 6.9e-19 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2187, 3531
Acc36I ACCTGC 2 cut(s) 934, 2872
AccB1I GGYRCC 5 cut(s) 41, 274, 2822, 3036, 3278
AccB7I CCANNNNNTGG 1 cut(s) 1725
AccI GTMKAC 4 cut(s) 288, 796, 821, 1938
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 1532
AclWI GGATC 4 cut(s) 2664, 3113, 3580, 3650
AcoI YGGCCR 5 cut(s) 25, 46, 73, 204, 2530
AcsI RAATTY 5 cut(s) 335, 676, 1147, 2512, 3503
AcuI CTGAAG 6 cut(s) 1725, 1960, 2614, 2826, 2833, 3569
AcyI GRCGYC 2 cut(s) 42, 3037
AfaI GTAC 6 cut(s) 5, 1752, 2405, 3229, 3252, 3395
AfiI CCNNNNNNNGG 7 cut(s) 208, 318, 957, 1725, 2354, 2710, 3550
AflII CTTAAG 2 cut(s) 1133, 3632
AhlI ACTAGT 1 cut(s) 962
AjiI CACGTC 1 cut(s) 2584
AjnI CCWGG 5 cut(s) 1159, 1180, 1347, 2825, 2834
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
Alw21I GWGCWC 3 cut(s) 2335, 2986, 3366
Alw26I GTCTC 3 cut(s) 414, 2163, 3571
Alw44I GTGCAC 1 cut(s) 2331
AlwI GGATC 4 cut(s) 2664, 3113, 3580, 3650
AlwNI CAGNNNCTG 2 cut(s) 2276, 3001
Ama87I CYCGRG 2 cut(s) 411, 2753
Aor13HI TCCGGA 1 cut(s) 1532
ApaI GGGCCC 1 cut(s) 2195
ApaLI GTGCAC 1 cut(s) 2331
ApeKI GCWGC 6 cut(s) 119, 122, 650, 968, 1596, 1709
ApoI RAATTY 5 cut(s) 335, 676, 1147, 2512, 3503
ArsI GACNNNNNNTTYG 4 cut(s) 1931, 1963, 3488, 3520
Asp700I GAANNNNTTC 4 cut(s) 2436, 2791, 3259, 3304
AspLEI GCGC 4 cut(s) 44, 303, 501, 3039
AsuC2I CCSGG 2 cut(s) 50, 203
AvaI CYCGRG 2 cut(s) 411, 2753
AvaII GGWCC 4 cut(s) 321, 3371, 3496, 3541
BaeGI GKGCMC 7 cut(s) 2195, 2335, 2553, 2754, 2825, 3281, 3518
BanI GGYRCC 5 cut(s) 41, 274, 2822, 3036, 3278
BanII GRGCYC 5 cut(s) 1128, 1683, 2195, 2986, 3366
BauI CACGAG 1 cut(s) 3012
BbsI GAAGAC 1 cut(s) 1611
Bbv12I GWGCWC 3 cut(s) 2335, 2986, 3366
BbvI GCAGC 6 cut(s) 131, 134, 637, 980, 1608, 1696
BccI CCATC 8 cut(s) 162, 410, 455, 1733, 2222, 2884, 3110, 3229
BceAI ACGGC 6 cut(s) 22, 40, 191, 379, 672, 2732
BciT130I CCWGG 5 cut(s) 1161, 1182, 1349, 2827, 2836
BciVI GTATCC 1 cut(s) 2824
BclI TGATCA 5 cut(s) 261, 1279, 1867, 2323, 2350
BcnI CCSGG 2 cut(s) 50, 203
BcoDI GTCTC 3 cut(s) 414, 2163, 3571
BcuI ACTAGT 1 cut(s) 962
BfmI CTRYAG 3 cut(s) 1959, 2399, 2865
BfoI RGCGCY 2 cut(s) 45, 3040
BfrI CTTAAG 2 cut(s) 1133, 3632
BfuAI ACCTGC 2 cut(s) 934, 2872
BfuI GTATCC 1 cut(s) 2824
BglI GCCNNNNNGGC 2 cut(s) 33, 203
BglII AGATCT 1 cut(s) 3453
BlpI GCTNAGC 1 cut(s) 1002
BmcAI AGTACT 1 cut(s) 2405
Bme1390I CCNGG 7 cut(s) 50, 203, 1161, 1182, 1349, 2827, 2836
Bme18I GGWCC 4 cut(s) 321, 3371, 3496, 3541
BmeT110I CYCGRG 2 cut(s) 411, 2753
BmgBI CACGTC 1 cut(s) 2584
BmrFI CCNGG 7 cut(s) 50, 203, 1161, 1182, 1349, 2827, 2836
BmrI ACTGGG 2 cut(s) 2669, 2828
BmsI GCATC 5 cut(s) 339, 848, 1783, 1813, 1924
BmuI ACTGGG 2 cut(s) 2669, 2828
BpiI GAAGAC 1 cut(s) 1611
BplI GAGNNNNNCTC 4 cut(s) 2231, 2263, 3142, 3174
BpmI CTGGAG 1 cut(s) 1143
Bpu10I CCTNAGC 2 cut(s) 1902, 3360
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 3 cut(s) 714, 888, 3350
BpuMI CCSGG 2 cut(s) 50, 203
BsaHI GRCGYC 2 cut(s) 42, 3037
BsaI GGTCTC 1 cut(s) 414
BsaWI WCCGGW 2 cut(s) 244, 1532
BsaXI ACNNNNNCTCC 8 cut(s) 89, 119, 119, 149, 203, 233, 1576, 1606
Bsc4I CCNNNNNNNGG 7 cut(s) 208, 318, 957, 1725, 2354, 2710, 3550
Bse118I RCCGGY 2 cut(s) 44, 233
Bse1I ACTGG 4 cut(s) 457, 985, 2675, 2823
Bse3DI GCAATG 2 cut(s) 373, 997
BseAI TCCGGA 1 cut(s) 1532
BseBI CCWGG 5 cut(s) 1161, 1182, 1349, 2827, 2836
BseLI CCNNNNNNNGG 7 cut(s) 208, 318, 957, 1725, 2354, 2710, 3550
BseMI GCAATG 2 cut(s) 373, 997
BseMII CTCAG 9 cut(s) 819, 1893, 1992, 2229, 2283, 3008, 3173, 3351, 3404
BseNI ACTGG 4 cut(s) 457, 985, 2675, 2823
BseRI GAGGAG 3 cut(s) 174, 227, 732
BseSI GKGCMC 7 cut(s) 2195, 2335, 2553, 2754, 2825, 3281, 3518
BseX3I CGGCCG 4 cut(s) 25, 46, 73, 204
BseXI GCAGC 6 cut(s) 131, 134, 637, 980, 1608, 1696
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 3 cut(s) 903, 987, 2987
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 4 cut(s) 28, 49, 76, 207
BshNI GGYRCC 5 cut(s) 41, 274, 2822, 3036, 3278
BsiEI CGRYCG 4 cut(s) 28, 49, 76, 207
BsiHKAI GWGCWC 3 cut(s) 2335, 2986, 3366
BsiHKCI CYCGRG 2 cut(s) 411, 2753
BsiSI CCGG 9 cut(s) 45, 49, 57, 203, 234, 245, 278, 1252, 1533
BslFI GGGAC 3 cut(s) 334, 1365, 3384
BslI CCNNNNNNNGG 7 cut(s) 208, 318, 957, 1725, 2354, 2710, 3550
BsmAI GTCTC 3 cut(s) 414, 2163, 3571
BsmFI GGGAC 3 cut(s) 334, 1365, 3384
BsmI GAATGC 1 cut(s) 858
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 411, 2753
Bsp120I GGGCCC 1 cut(s) 2191
Bsp13I TCCGGA 1 cut(s) 1532
Bsp1407I TGTACA 1 cut(s) 1750
Bsp1720I GCTNAGC 1 cut(s) 1002
Bsp19I CCATGG 2 cut(s) 1724, 2392
BspCNI CTCAG 9 cut(s) 820, 1894, 1993, 2230, 2284, 3007, 3172, 3352, 3403
BspEI TCCGGA 1 cut(s) 1532
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 3 cut(s) 1918, 3418, 3613
BspMAI CTGCAG 3 cut(s) 1963, 2403, 2869
BspMI ACCTGC 2 cut(s) 934, 2872
BspPI GGATC 4 cut(s) 2664, 3113, 3580, 3650
BspT107I GGYRCC 5 cut(s) 41, 274, 2822, 3036, 3278
BspTI CTTAAG 2 cut(s) 1133, 3632
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 373, 997
BsrFI RCCGGY 2 cut(s) 44, 233
BsrGI TGTACA 1 cut(s) 1750
BsrI ACTGG 4 cut(s) 457, 985, 2675, 2823
BssAI RCCGGY 2 cut(s) 44, 233
BssNI GRCGYC 2 cut(s) 42, 3037
BssSI CACGAG 1 cut(s) 3012
BssT1I CCWWGG 6 cut(s) 313, 1053, 1724, 2392, 2517, 2553
Bst2BI CACGAG 1 cut(s) 3012
Bst2UI CCWGG 5 cut(s) 1161, 1182, 1349, 2827, 2836
Bst6I CTCTTC 2 cut(s) 819, 1233
BstACI GRCGYC 2 cut(s) 42, 3037
BstAFI CTTAAG 2 cut(s) 1133, 3632
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 1750
BstC8I GCNNGC 6 cut(s) 46, 235, 578, 1290, 1745, 2590
BstDSI CCRYGG 4 cut(s) 207, 654, 1724, 2392
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 955
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 2 cut(s) 45, 3040
BstHHI GCGC 4 cut(s) 44, 303, 501, 3039
BstMAI GTCTC 3 cut(s) 414, 2163, 3571
BstMCI CGRYCG 4 cut(s) 28, 49, 76, 207
BstNI CCWGG 5 cut(s) 1161, 1182, 1349, 2827, 2836
BstNSI RCATGY 1 cut(s) 1910
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 7 cut(s) 48, 201, 1159, 1180, 1347, 2825, 2834
BstSFI CTRYAG 3 cut(s) 1959, 2399, 2865
BstSLI GKGCMC 7 cut(s) 2195, 2335, 2553, 2754, 2825, 3281, 3518
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 6 cut(s) 131, 134, 637, 980, 1608, 1696
BstV2I GAAGAC 1 cut(s) 1611
BstX2I RGATCY 2 cut(s) 2669, 3453
BstXI CCANNNNNNTGG 2 cut(s) 1333, 2576
BstYI RGATCY 2 cut(s) 2669, 3453
BstZI CGGCCG 4 cut(s) 25, 46, 73, 204
BsuI GTATCC 1 cut(s) 2824
BtgI CCRYGG 4 cut(s) 207, 654, 1724, 2392
BtrI CACGTC 1 cut(s) 2584
BtsI GCAGTG 3 cut(s) 1034, 1531, 2999
BveI ACCTGC 2 cut(s) 934, 2872
Cac8I GCNNGC 6 cut(s) 46, 235, 578, 1290, 1745, 2590
CaiI CAGNNNCTG 2 cut(s) 2276, 3001
CciI TCATGA 3 cut(s) 1918, 3418, 3613
CfoI GCGC 4 cut(s) 44, 303, 501, 3039
Cfr10I RCCGGY 2 cut(s) 44, 233
CseI GACGC 1 cut(s) 292
Csp6I GTAC 6 cut(s) 4, 1751, 2404, 3228, 3251, 3394
CspCI CAANNNNNGTGG 2 cut(s) 2506, 2541
CviQI GTAC 6 cut(s) 4, 1751, 2404, 3228, 3251, 3394
DinI GGCGCC 2 cut(s) 43, 3038
DraI TTTAAA 3 cut(s) 706, 2892, 3483
EaeI YGGCCR 5 cut(s) 25, 46, 73, 204, 2530
EagI CGGCCG 4 cut(s) 25, 46, 73, 204
Eam1104I CTCTTC 2 cut(s) 819, 1233
EarI CTCTTC 2 cut(s) 819, 1233
EciI GGCGGA 2 cut(s) 81, 97
Ecl136II GAGCTC 2 cut(s) 2984, 3364
EclXI CGGCCG 4 cut(s) 25, 46, 73, 204
Eco130I CCWWGG 6 cut(s) 313, 1053, 1724, 2392, 2517, 2553
Eco147I AGGCCT 1 cut(s) 1747
Eco24I GRGCYC 5 cut(s) 1128, 1683, 2195, 2986, 3366
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 4 cut(s) 321, 3371, 3496, 3541
Eco52I CGGCCG 4 cut(s) 25, 46, 73, 204
Eco53kI GAGCTC 2 cut(s) 2984, 3364
Eco57I CTGAAG 6 cut(s) 1725, 1960, 2614, 2826, 2833, 3569
Eco88I CYCGRG 2 cut(s) 411, 2753
Eco91I GGTNACC 1 cut(s) 419
EcoICRI GAGCTC 2 cut(s) 2984, 3364
EcoNI CCTNNNNNAGG 1 cut(s) 955
EcoO109I RGGNCCY 5 cut(s) 321, 1443, 2191, 2192, 3496
EcoO65I GGTNACC 1 cut(s) 419
EcoRII CCWGG 5 cut(s) 1159, 1180, 1347, 2825, 2834
EcoT14I CCWWGG 6 cut(s) 313, 1053, 1724, 2392, 2517, 2553
EcoT38I GRGCYC 5 cut(s) 1128, 1683, 2195, 2986, 3366
EgeI GGCGCC 2 cut(s) 43, 3038
EheI GGCGCC 2 cut(s) 43, 3038
ErhI CCWWGG 6 cut(s) 313, 1053, 1724, 2392, 2517, 2553
FaqI GGGAC 3 cut(s) 334, 1365, 3384
FauI CCCGC 2 cut(s) 184, 335
FbaI TGATCA 5 cut(s) 261, 1279, 1867, 2323, 2350
FblI GTMKAC 4 cut(s) 288, 796, 821, 1938
FriOI GRGCYC 5 cut(s) 1128, 1683, 2195, 2986, 3366
GlaI GCGC 4 cut(s) 43, 302, 500, 3038
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 1143
HaeII RGCGCY 2 cut(s) 45, 3040
HapII CCGG 9 cut(s) 45, 49, 57, 203, 234, 245, 278, 1252, 1533
HgaI GACGC 1 cut(s) 292
HhaI GCGC 4 cut(s) 44, 303, 501, 3039
Hin1I GRCGYC 2 cut(s) 42, 3037
Hin6I GCGC 4 cut(s) 42, 301, 499, 3037
HinP1I GCGC 4 cut(s) 42, 301, 499, 3037
HincII GTYRAC 2 cut(s) 289, 534
HindII GTYRAC 2 cut(s) 289, 534
HindIII AAGCTT 1 cut(s) 1198
HpaII CCGG 9 cut(s) 45, 49, 57, 203, 234, 245, 278, 1252, 1533
Hpy166II GTNNAC 8 cut(s) 289, 534, 797, 822, 1654, 1939, 2333, 2699
Hpy8I GTNNAC 8 cut(s) 289, 534, 797, 822, 1654, 1939, 2333, 2699
Hpy99I CGWCG 2 cut(s) 293, 308
HpyCH4IV ACGT 3 cut(s) 445, 1272, 2583
HpySE526I ACGT 3 cut(s) 445, 1272, 2583
Hsp92I GRCGYC 2 cut(s) 42, 3037
HspAI GCGC 4 cut(s) 42, 301, 499, 3037
KasI GGCGCC 2 cut(s) 41, 3036
KflI GGGWCCC 1 cut(s) 321
Kpn2I TCCGGA 1 cut(s) 1532
KroI GCCGGC 2 cut(s) 44, 233
KroNI GCCGGC 2 cut(s) 46, 235
Ksp22I TGATCA 5 cut(s) 261, 1279, 1867, 2323, 2350
LmnI GCTCC 9 cut(s) 53, 59, 152, 745, 934, 1162, 1853, 2350, 2660
Lsp1109I GCAGC 6 cut(s) 131, 134, 637, 980, 1608, 1696
LweI GCATC 5 cut(s) 339, 848, 1783, 1813, 1924
MaeII ACGT 3 cut(s) 445, 1272, 2583
MfeI CAATTG 2 cut(s) 1355, 1797
MflI RGATCY 2 cut(s) 2669, 3453
Mly113I GGCGCC 2 cut(s) 42, 3037
MlyI GAGTC 8 cut(s) 539, 865, 1249, 2163, 2303, 2552, 3164, 3563
MmeI TCCRAC 4 cut(s) 174, 1351, 2291, 3216
MroI TCCGGA 1 cut(s) 1532
MroNI GCCGGC 2 cut(s) 44, 233
MroXI GAANNNNTTC 4 cut(s) 2436, 2791, 3259, 3304
MslI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
MspA1I CMGCKG 1 cut(s) 3547
MspCI CTTAAG 2 cut(s) 1133, 3632
MspI CCGG 9 cut(s) 45, 49, 57, 203, 234, 245, 278, 1252, 1533
MspR9I CCNGG 7 cut(s) 50, 203, 1161, 1182, 1349, 2827, 2836
MunI CAATTG 2 cut(s) 1355, 1797
Mva1269I GAATGC 1 cut(s) 858
MvaI CCWGG 5 cut(s) 1161, 1182, 1349, 2827, 2836
MvnI CGCG 1 cut(s) 303
NaeI GCCGGC 2 cut(s) 46, 235
NarI GGCGCC 2 cut(s) 42, 3037
NciI CCSGG 2 cut(s) 50, 203
NcoI CCATGG 2 cut(s) 1724, 2392
NgoMIV GCCGGC 2 cut(s) 44, 233
NmeAIII GCCGAG 4 cut(s) 51, 101, 120, 2558
NmuCI GTSAC 9 cut(s) 419, 428, 1416, 1499, 1505, 1517, 1538, 2579, 2997
NspI RCATGY 1 cut(s) 1910
PagI TCATGA 3 cut(s) 1918, 3418, 3613
PceI AGGCCT 1 cut(s) 1747
PctI GAATGC 1 cut(s) 858
PdiI GCCGGC 2 cut(s) 46, 235
PdmI GAANNNNTTC 4 cut(s) 2436, 2791, 3259, 3304
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 1725
PleI GAGTC 8 cut(s) 538, 865, 1249, 2163, 2302, 2552, 3164, 3562
PluTI GGCGCC 2 cut(s) 45, 3040
PpsI GAGTC 8 cut(s) 538, 865, 1249, 2163, 2302, 2552, 3164, 3562
PpuMI RGGWCCY 2 cut(s) 321, 3496
PsiI TTATAA 2 cut(s) 2187, 3531
Psp124BI GAGCTC 2 cut(s) 2986, 3366
Psp5II RGGWCCY 2 cut(s) 321, 3496
Psp6I CCWGG 5 cut(s) 1159, 1180, 1347, 2825, 2834
PspEI GGTNACC 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 5 cut(s) 1159, 1180, 1347, 2825, 2834
PspOMI GGGCCC 1 cut(s) 2191
PspPPI RGGWCCY 2 cut(s) 321, 3496
PsrI GAACNNNNNNTAC 2 cut(s) 1465, 1497
PstI CTGCAG 3 cut(s) 1963, 2403, 2869
PstNI CAGNNNCTG 2 cut(s) 2276, 3001
PsuI RGATCY 2 cut(s) 2669, 3453
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 3547
RsaI GTAC 6 cut(s) 5, 1752, 2405, 3229, 3252, 3395
RsaNI GTAC 6 cut(s) 4, 1751, 2404, 3228, 3251, 3394
RseI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
SacI GAGCTC 2 cut(s) 2986, 3366
SalI GTCGAC 1 cut(s) 287
SbfI CCTGCAGG 1 cut(s) 2869
ScaI AGTACT 1 cut(s) 2405
SchI GAGTC 8 cut(s) 539, 865, 1249, 2163, 2303, 2552, 3164, 3563
ScrFI CCNGG 7 cut(s) 50, 203, 1161, 1182, 1349, 2827, 2836
SdaI CCTGCAGG 1 cut(s) 2869
SfaNI GCATC 5 cut(s) 339, 848, 1783, 1813, 1924
SfcI CTRYAG 3 cut(s) 1959, 2399, 2865
SfoI GGCGCC 2 cut(s) 43, 3038
SinI GGWCC 4 cut(s) 321, 3371, 3496, 3541
SmiMI CAYNNNNRTG 3 cut(s) 879, 2052, 2427
SmlI CTYRAG 5 cut(s) 729, 903, 1133, 3365, 3632
SmoI CTYRAG 5 cut(s) 729, 903, 1133, 3365, 3632
SpeI ACTAGT 1 cut(s) 962
Sse8387I CCTGCAGG 1 cut(s) 2869
SseBI AGGCCT 1 cut(s) 1747
SspDI GGCGCC 2 cut(s) 41, 3036
SspI AATATT 1 cut(s) 862
SstI GAGCTC 2 cut(s) 2986, 3366
StuI AGGCCT 1 cut(s) 1747
StyD4I CCNGG 7 cut(s) 48, 201, 1159, 1180, 1347, 2825, 2834
StyI CCWWGG 6 cut(s) 313, 1053, 1724, 2392, 2517, 2553
TaiI ACGT 3 cut(s) 448, 1275, 2586
TaqI TCGA 7 cut(s) 157, 268, 288, 306, 997, 3074, 3575
TatI WGTACW 3 cut(s) 1750, 2403, 3393
TseFI GTSAC 9 cut(s) 419, 428, 1416, 1499, 1505, 1517, 1538, 2579, 2997
TseI GCWGC 6 cut(s) 119, 122, 650, 968, 1596, 1709
Tsp45I GTSAC 9 cut(s) 419, 428, 1416, 1499, 1505, 1517, 1538, 2579, 2997
TspGWI ACGGA 3 cut(s) 807, 1280, 2102
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 1725
Vha464I CTTAAG 2 cut(s) 1133, 3632
VneI GTGCAC 1 cut(s) 2331
VpaK11BI GGWCC 4 cut(s) 321, 3371, 3496, 3541
XagI CCTNNNNNAGG 1 cut(s) 955
XapI RAATTY 5 cut(s) 335, 676, 1147, 2512, 3503
XceI RCATGY 1 cut(s) 1910
XcmI CCANNNNNNNNNTGG 1 cut(s) 2032
XmiI GTMKAC 4 cut(s) 288, 796, 821, 1938
XmnI GAANNNNTTC 4 cut(s) 2436, 2791, 3259, 3304
ZrmI AGTACT 1 cut(s) 2405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.