pycom17g18570

Occludin homology domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15945599 .. 15947149
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18570.1

Sequence Viewer

Length: 1551 bp
ATGGCAAGTGACGATGAGAAAGAACTGAAGCATAAATTGCAAGGCTCTGAACGAGGGTTTTCTACTTTGCCCGTCACATGGAGAACTCCTGACGGCAAGCATGTGCAGAGTGGGATTGATGAGAAGCAAGATGATCTTGAAGTTGACGCAGTTGAGATTGAAAAACAGTTGCTTGATGCTGATCAGGTTGCTGAATTGGCTGTAGTTAGTAACTCTAATCGTAATAAAAGTGAACCTCTTAAAGAAACAAAACCCTTTTCACCTGAGCATGGTGAGCTGCAAGGCCGCCAAAGTTTGGTAGACCCTGTGTATGGAGGGGAGAGTTTAGCCAAGGATGACTTCAGGGATGAGCAGTCTGACAGTTCTGAGAGGATATCTAAAGGTACATCCAAACGAGGTTCTGAGGTAAAGCACACTGATGAGAAATCTGAACACAATAAAAGATTAAAAACAGAAATATCACGGCAATCTTCTATTTCTGCGGGTAAAGGTGTCCATCTTTCAGAGGCTTCTCACAATTTGTCTCCTGGTAGACTTGTTGAAGGCTCTCATAAGGACCCTGTCTCTCAAATGATGGATAGAGATGATAGGGATGGGAATATTGAATCTGGATCACTCAAGGCGTGCAACCAAGCATTTTCTGGCAGATACACTTCAGAGTTTAAACAATCAAGTCAGCAGTTTTTTTATCATAATTTACAGACAAAGGTTCCTGATTCAGCAGAAAGACCAGATAGATATGCAGAGAGTTTAGGGCACGGCGGGAAGTACTCTGAAAAGAGCTCTCAAATGCATGACGGTTTCCTCTTGCAAAAAGATAAATTTCATAGAGATACTCAAAATGAGGACGGTTATGCTAATGAGAGAAAGGTTCCAAGAAATTCTAAGGAAGGTGGTACCCGAGGCAAACAGTCAGTGCCCTTGGATCCCCACTACCAGAAAGATGGTGATATAGCTGGATCGATCAAGGGAAGTGCACAAGTTTCCAGCCTGTTATTGGGTTCTTCACCAAAGGATAATAGCCGAAATGGTGCAGCCGCATCCCCTGTCGTTAATGGCAAAGGCAGTATACTCCAAAGAGAGTTTTCAGACTTGGAGTTGGGCGAACTTCGTGAGCCCTTGCCTGAGGAAACAACAGTTAATAAGCAATTTGAGAGAAAAGGTTCTTTTAAGCAGTCAGATGACAAAAAGAGCATTTCAGAGAACCAGGTTTCTGAATTCAGTAAAGTGAAACGTGCAGGAAAGGCAAATTTTGATTCGGGAAGGCCATCCTCTCCAGATTTAAACTCTAAGTTTCCAAGTAATCAGGAAGGCTTGAATAAAAAGAGGAACTACGAAGATCGCATTGAGGATTTAACAAGGTCTCAACAGAGAGCTGTGCAGTCTGAGTCGCAACACCCATCACGAGTAGATCATCCTGATTTGGGGCGTTCGTTTAGCAAAACAGTGGGTCTTAGTAGTAAATCTAGACAGAATGAAGCTGGAGGCAGACAAGCAATTGGTGTGGCTGGACATGGAGAAAGCAATCCCAAGTGCTCCTCAGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

56.89

Weight (kDa)

6.5

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 1 cut(s) 896
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 3 cut(s) 300, 532, 1069
AciI CCGC 4 cut(s) 286, 482, 762, 1038
AclWI GGATC 4 cut(s) 619, 920, 933, 967
AcsI RAATTY 4 cut(s) 821, 880, 1217, 1249
AcuI CTGAAG 3 cut(s) 47, 325, 639
AfaI GTAC 3 cut(s) 385, 770, 898
AfiI CCNNNNNNNGG 6 cut(s) 78, 269, 295, 311, 997, 1424
AgsI TTSAA 5 cut(s) 140, 161, 542, 605, 1318
AjnI CCWGG 2 cut(s) 526, 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 5 cut(s) 277, 783, 956, 1376, 1481
AluI AGCT 5 cut(s) 277, 783, 956, 1376, 1481
Alw21I GWGCWC 3 cut(s) 785, 979, 1538
Alw26I GTCTC 3 cut(s) 528, 568, 1368
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 4 cut(s) 619, 920, 933, 967
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 2 cut(s) 283, 1265
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 3 cut(s) 277, 1034, 1544
ApoI RAATTY 4 cut(s) 821, 880, 1217, 1249
Asp700I GAANNNNTTC 1 cut(s) 1162
Asp718I GGTACC 1 cut(s) 896
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 252, 284, 959, 999
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 1125
BaeGI GKGCMC 3 cut(s) 759, 921, 979
BamHI GGATCC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 896
BanII GRGCYC 2 cut(s) 785, 1119
BauI CACGAG 1 cut(s) 1404
Bbv12I GWGCWC 3 cut(s) 785, 979, 1538
BbvCI CCTCAGC 1 cut(s) 1540
BbvI GCAGC 2 cut(s) 264, 1046
BccI CCATC 6 cut(s) 504, 568, 587, 938, 1276, 1408
BceAI ACGGC 3 cut(s) 109, 479, 775
BciT130I CCWGG 2 cut(s) 528, 1208
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 528, 568, 1368
BfaI CTAG 1 cut(s) 1467
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 5 cut(s) 278, 286, 1035, 1038, 1545
BlsI GCNGC 5 cut(s) 279, 287, 1036, 1039, 1546
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 2 cut(s) 528, 1208
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 5 cut(s) 558, 711, 873, 898, 927
BmrFI CCNGG 2 cut(s) 528, 1208
BmsI GCATC 2 cut(s) 166, 1049
BpmI CTGGAG 2 cut(s) 1260, 1503
Bpu10I CCTNAGC 2 cut(s) 264, 1540
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 1368
BsaJI CCNNGG 3 cut(s) 330, 901, 921
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 269, 295, 311, 997, 1424
Bse21I CCTNAGG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 2 cut(s) 528, 1208
BseCI ATCGAT 1 cut(s) 962
BseDI CCNNGG 3 cut(s) 330, 901, 921
BseGI GGATG 7 cut(s) 340, 352, 386, 598, 1040, 1268, 1414
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 6 cut(s) 78, 269, 295, 311, 997, 1424
BseMII CTCAG 5 cut(s) 255, 357, 393, 1116, 1377
BseRI GAGGAG 1 cut(s) 1528
BseSI GKGCMC 3 cut(s) 759, 921, 979
BseXI GCAGC 2 cut(s) 264, 1046
BsgI GTGCAG 4 cut(s) 125, 1053, 1257, 1400
BshFI GGCC 2 cut(s) 285, 1267
BshNI GGYRCC 1 cut(s) 896
BshVI ATCGAT 1 cut(s) 962
BsiHKAI GWGCWC 3 cut(s) 785, 979, 1538
BsiHKCI CYCGRG 1 cut(s) 900
BslI CCNNNNNNNGG 6 cut(s) 78, 269, 295, 311, 997, 1424
BsmAI GTCTC 3 cut(s) 528, 568, 1368
BsnI GGCC 2 cut(s) 285, 1267
Bso31I GGTCTC 1 cut(s) 1368
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 6 cut(s) 759, 785, 921, 979, 1119, 1538
Bsp143I GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
BspACI CCGC 4 cut(s) 286, 482, 762, 1038
BspANI GGCC 2 cut(s) 285, 1267
BspCNI CTCAG 5 cut(s) 256, 358, 394, 1117, 1378
BspDI ATCGAT 1 cut(s) 962
BspLI GGNNCC 5 cut(s) 558, 711, 873, 898, 927
BspPI GGATC 4 cut(s) 619, 920, 933, 967
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 1368
BssECI CCNNGG 3 cut(s) 330, 901, 921
BssMI GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
BssNAI GTATAC 1 cut(s) 1070
BssSI CACGAG 1 cut(s) 1404
BssT1I CCWWGG 2 cut(s) 330, 921
Bst1107I GTATAC 1 cut(s) 1070
Bst2BI CACGAG 1 cut(s) 1404
Bst2UI CCWGG 2 cut(s) 528, 1208
Bst4CI ACNGT 7 cut(s) 168, 362, 800, 851, 912, 1138, 1447
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 98, 625
BstDEI CTNAG 9 cut(s) 264, 366, 402, 885, 1125, 1290, 1386, 1454, 1540
BstF5I GGATG 7 cut(s) 340, 352, 386, 598, 1040, 1268, 1414
BstKTI GATC 8 cut(s) 136, 184, 614, 928, 962, 966, 1342, 1414
BstMAI GTCTC 3 cut(s) 528, 568, 1368
BstMBI GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
BstMWI GCNNNNNNNGC 4 cut(s) 37, 197, 274, 1244
BstNI CCWGG 2 cut(s) 528, 1208
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 526, 1206
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 3 cut(s) 759, 921, 979
BstV1I GCAGC 2 cut(s) 264, 1046
BstX2I RGATCY 1 cut(s) 925
BstXI CCANNNNNNTGG 1 cut(s) 944
BstYI RGATCY 1 cut(s) 925
BstZ17I GTATAC 1 cut(s) 1070
Bsu15I ATCGAT 1 cut(s) 962
Bsu36I CCTNAGG 1 cut(s) 1125
BsuRI GGCC 2 cut(s) 285, 1267
BsuTUI ATCGAT 1 cut(s) 962
BtsCI GGATG 7 cut(s) 340, 352, 386, 598, 1040, 1268, 1414
BtsIMutI CAGTG 3 cut(s) 414, 921, 1452
Cac8I GCNNGC 2 cut(s) 98, 625
Cfr13I GGNCC 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 962
CseI GACGC 1 cut(s) 155
CsiI ACCWGGT 1 cut(s) 1206
Csp6I GTAC 3 cut(s) 384, 769, 897
CspCI CAANNNNNGTGG 2 cut(s) 1485, 1520
CviAII CATG 6 cut(s) 78, 101, 269, 794, 1514, 1548
CviQI GTAC 3 cut(s) 384, 769, 897
DdeI CTNAG 9 cut(s) 264, 366, 402, 885, 1125, 1290, 1386, 1454, 1540
DpnI GATC 8 cut(s) 135, 183, 613, 927, 961, 965, 1341, 1413
DpnII GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
DraI TTTAAA 2 cut(s) 664, 1284
Ecl136II GAGCTC 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 330, 921
Eco24I GRGCYC 2 cut(s) 785, 1119
Eco31I GGTCTC 1 cut(s) 1368
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 783
Eco57I CTGAAG 3 cut(s) 47, 325, 639
Eco81I CCTNAGG 1 cut(s) 1125
Eco88I CYCGRG 1 cut(s) 900
EcoICRI GAGCTC 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 1217
EcoRII CCWGG 2 cut(s) 526, 1206
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 330, 921
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 2 cut(s) 785, 1119
ErhI CCWWGG 2 cut(s) 330, 921
FaeI CATG 6 cut(s) 81, 104, 272, 797, 1517, 1551
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 323, 355
FatI CATG 6 cut(s) 77, 100, 268, 793, 1513, 1547
FauI CCCGC 2 cut(s) 475, 755
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 3 cut(s) 300, 532, 1069
Fnu4HI GCNGC 5 cut(s) 278, 286, 1035, 1038, 1545
FokI GGATG 7 cut(s) 347, 359, 373, 605, 1027, 1255, 1401
FriOI GRGCYC 2 cut(s) 785, 1119
Fsp4HI GCNGC 5 cut(s) 278, 286, 1035, 1038, 1545
FspBI CTAG 1 cut(s) 1467
GluI GCNGC 5 cut(s) 278, 286, 1035, 1038, 1545
GsuI CTGGAG 2 cut(s) 1260, 1503
HaeIII GGCC 2 cut(s) 285, 1267
HgaI GACGC 1 cut(s) 155
Hin1II CATG 6 cut(s) 81, 104, 272, 797, 1517, 1551
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 4 cut(s) 605, 716, 1256, 1388
HphI GGTGA 4 cut(s) 252, 284, 959, 999
Hpy166II GTNNAC 6 cut(s) 145, 233, 301, 533, 977, 1070
Hpy8I GTNNAC 6 cut(s) 145, 233, 301, 533, 977, 1070
HpyAV CCTTC 4 cut(s) 536, 884, 1257, 1304
HpyCH4III ACNGT 7 cut(s) 168, 362, 800, 851, 912, 1138, 1447
HpyCH4IV ACGT 1 cut(s) 1234
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 197, 274, 1244
HpyF3I CTNAG 9 cut(s) 264, 366, 402, 885, 1125, 1290, 1386, 1454, 1540
HpySE526I ACGT 1 cut(s) 1234
Hsp92II CATG 6 cut(s) 81, 104, 272, 797, 1517, 1551
KpnI GGTACC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
LmnI GCTCC 1 cut(s) 1541
Lsp1109I GCAGC 2 cut(s) 264, 1046
LweI GCATC 2 cut(s) 166, 1049
MabI ACCWGGT 1 cut(s) 1206
MaeI CTAG 1 cut(s) 1467
MaeII ACGT 1 cut(s) 1234
MaeIII GTNAC 3 cut(s) 8, 73, 209
MalI GATC 8 cut(s) 135, 183, 613, 927, 961, 965, 1341, 1413
MboI GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
MboII GAAGA 3 cut(s) 462, 996, 1349
MfeI CAATTG 1 cut(s) 1497
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 6 cut(s) 759, 785, 921, 979, 1119, 1538
MlyI GAGTC 1 cut(s) 1397
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 1162
MseI TTAA 8 cut(s) 240, 446, 663, 1053, 1140, 1170, 1283, 1355
MslI CAYNNNNRTG 1 cut(s) 417
MspR9I CCNGG 2 cut(s) 528, 1208
MssI GTTTAAAC 1 cut(s) 664
MunI CAATTG 1 cut(s) 1497
MvaI CCWGG 2 cut(s) 528, 1208
MwoI GCNNNNNNNGC 4 cut(s) 37, 197, 274, 1244
NdeII GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
NlaIII CATG 6 cut(s) 81, 104, 272, 797, 1517, 1551
NlaIV GGNNCC 5 cut(s) 558, 711, 873, 898, 927
NmuCI GTSAC 2 cut(s) 8, 73
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 1162
PfeI GAWTC 3 cut(s) 605, 716, 1256
PflFI GACNNNGTC 1 cut(s) 560
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 5 cut(s) 279, 287, 1036, 1039, 1546
PleI GAGTC 1 cut(s) 1396
PmeI GTTTAAAC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 1396
PpuMI RGGWCCY 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 526, 1206
PspGI CCWGG 2 cut(s) 526, 1206
PspN4I GGNNCC 5 cut(s) 558, 711, 873, 898, 927
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PsuI RGATCY 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 3 cut(s) 385, 770, 898
RsaNI GTAC 3 cut(s) 384, 769, 897
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 785
SaqAI TTAA 8 cut(s) 240, 446, 663, 1053, 1140, 1170, 1283, 1355
SatI GCNGC 5 cut(s) 278, 286, 1035, 1038, 1545
Sau3AI GATC 8 cut(s) 133, 181, 611, 925, 959, 963, 1339, 1411
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 1 cut(s) 1397
ScrFI CCNGG 2 cut(s) 528, 1208
SduI GDGCHC 6 cut(s) 759, 785, 921, 979, 1119, 1538
SexAI ACCWGGT 1 cut(s) 1206
SfaNI GCATC 2 cut(s) 166, 1049
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SsiI CCGC 4 cut(s) 286, 482, 762, 1038
SspI AATATT 1 cut(s) 601
SspMI CTAG 1 cut(s) 1467
SstI GAGCTC 1 cut(s) 785
StyD4I CCNGG 2 cut(s) 526, 1206
StyI CCWWGG 2 cut(s) 330, 921
TaaI ACNGT 7 cut(s) 168, 362, 800, 851, 912, 1138, 1447
TaiI ACGT 1 cut(s) 1237
TaqI TCGA 1 cut(s) 962
TatI WGTACW 1 cut(s) 768
TauI GCSGC 2 cut(s) 288, 1040
TfiI GAWTC 3 cut(s) 605, 716, 1256
Tru1I TTAA 8 cut(s) 240, 446, 663, 1053, 1140, 1170, 1283, 1355
Tru9I TTAA 8 cut(s) 240, 446, 663, 1053, 1140, 1170, 1283, 1355
TscAI CASTG 3 cut(s) 421, 921, 1452
TseFI GTSAC 2 cut(s) 8, 73
TseI GCWGC 3 cut(s) 277, 1034, 1544
Tsp45I GTSAC 2 cut(s) 8, 73
TspDTI ATGAA 2 cut(s) 815, 1491
TspRI CASTG 3 cut(s) 421, 921, 1452
Tth111I GACNNNGTC 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 4 cut(s) 821, 880, 1217, 1249
XbaI TCTAGA 1 cut(s) 1466
XceI RCATGY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 2 cut(s) 638, 994
XmiI GTMKAC 3 cut(s) 300, 532, 1069
XmnI GAANNNNTTC 1 cut(s) 1162
XspI CTAG 1 cut(s) 1467
ZrmI AGTACT 1 cut(s) 770
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.