Rw2G034850

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005746
Physical Location & Seq
Reverse (-)
57357081 .. 57367371
10291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034850.1

Sequence Viewer

Length: 3684 bp
ATGTACGGCGGCTCATCCAAGCACGGCCACGGCCGATTAGGAGGCGGCGCCGGCCGGGGAGCCGGAGCGGCCAAGCTCGGCCGAGCCTCCTTCCCTCCTCCGCACCGCAACTCCGCCGGCCCAGCAGCAGCCAACCGCCTCTCCCTCGGCGGGTCCAACCATCGAGGAGGCCGTAACCCCCCCGCCCCTGCCACGTCAGCCGCCGCCCCGGCCGTGGAGGAGAAGTTCAGCTTAGTCGCCGGCAACAATCCGGTGGCGTTCTCCATGATCATTCGGTTGGTGCCGGACTTGGTCGACGAGATCAGGCGCGTCGAGGCCCAGGGTGGGACCCCCCGCATCAAATTTGACTCCATGACTAATAATCCCAACGGCAATGTTATTGATGTGGGTGGGAAAGAGTTTAGATTTACATGGTCTCGGGATGGTGACCTCTGTGACATATATGAAGAACGTGAAACTGGTGAAGATGGAAATGGTTTGCTTGTTGAATCAGGATGTGCATGGCGCAAAGTGAATGTTCAGCGTATATTAGATGAGTCAACTAAGAATCATGTTAAGAGGCGGTCGGAGGAAGCTGAACGCTTGCACAAATCACGAAAAGCCATTGTGCTAGAACAGAATCCAGCCATGAAGAATCAACTAAAGCAATTTACTGCTGCCACGGCTAATAGTTCATGGAGGAATTTCAAACAGAAGAAGGAGCCTCCCTTTAAAAAGCAGAAAGTTGAACCACCTCAAGTTTCAGCTCCTCCAAAGTCTGCATATAAATCTGGGGTATCATCAGCAACTACTGCAAAGGGTAGACAGTCATCATCACCTCTTCCGTCTACACCTGAGAAGTCTGCATCTCCATTTGGAATGCTAAATATTTCAAAGACTCATACAAGTGCAGATGAAACTATACCCTCTCAAGTCATTATTAAGGACAAACCTGCTCCTAGCTTGGATAAAGAAACCTCAATCAGGACTAGTGCAGCATTGGAAACTGGCAAAGGCAATGGTCGAGCTAAGCCAACAGATTTGCAGAGTTTGTTGATTACACTGCTCATGGAGAATCCCAAGGGGATGAGCTTAAAGGCTTTGGAGAAAGCTATTGGAGATTCATTTCCCAACTCTCTGAAAAAAATTGAGTCCATTCTTAAGAAGATCGCAAATTCCCAAGCTCCAGGGAAGTATCTCTTGAAGCCAGGAGTGGAGTTAGAAAGCTTCAAGAAACCTTTGTTTGAATCTGGAAGTTCCCCAGAAGAGAACCTTCGCCAGACTCCTGCTACGGATAACGTCTGTGATCAAAGGCCTGCTCAAATACCAGAGTTTAAGGAGAAGGTTTCTTCCAGTGAAATGGAGGAACAGGGCCAGGGACAATTGAATGCTACAGTTGGAGAAGAACCACGGGTATTCCAAAAAATTGATAACCAACAGCAGTCACCTGATCTTTTTGGTGAAAAAAGGGCCTCTGACAACAGTGAAGCCCAAATAGGTAGTTCTAGTTCTAGTGAAAGTGGAAGTGACAGTGACAGTGAAAGTGACAGCAGTGATTCCGGAAGTGACAGTGGAAGTCCTAGCAGAAGTAAAAGCCCAAAAGGAAGTGGGAGTGGGAGTAGCAGTGATAGTGAAAGTGATGTGTCTTCTAATAGCAAGGAGGTTTCTGATGAGGATGTGAACATTATGAGTGATGATGATAAAGAGCCCAAACATCAAACACAAGCCTCTGAAGCTGCTTTGCCCATTCCATGGGAGACTCCCGATGCCAGGCCTGTGCAGAGTGGGAATGATGACAAGCAAGATGATCTTGAATCTGATGCAATTGATATTGAAACTGTGGAACAGGATGCTGAATTGGCTGTTGTTAGTAGCTCCACTCCTAATAAATGTGATCAACCTGTTGATGAAAAAAAACCTTCTTCACCTGAGCATGTTGAGCATCATGACCGCCAGATTCTTGTAGACAGTTTGTTTGGAAAGACTGCAGACAAGGATGACTTCAGGTATGAGCAGTCTGATAGCTCTGAGAGGATGACTAAAGGTAAATCCAAAAGAGGTTTGGAGGTAAAGCACTCTGATGAAAAATCTGAACGCAGAAAAAGGTCAAAAACGGAAAACTCACCACAACCTCCTGCTTCTGTGGGTAAGGGTGTTCAATTTTCAGAGGATTATCATAATTTGTCTCCTGATAGACTCATTGAAGGCTCTTATAAGGGCCCTGTATCTCAAACGCTGAATAAAGCTGATAGGGATGGGAATACTGAGTTTGGCTCTCAAAAGGGCTACAATCAAGCAGTTTCTGGAAGATATAGCTCGGAGTCTAAACAATTAAGTCGGAAGTCTTATGATCATAGTGTACAAGCAAAGGCTCCTGATCAAGGTGAAAGACCTGATAGATATTCCGAGAGCTTGGGCCATGGTCTGCAGTACTCTGAAAAGAGCTCTCATGTGCATGAAGGCTTTCCCCTGCGAAAAGATAATGTTCATAGTAGTAGTCAAAAGGACGGTTATGTTAATGAAAAGAAGGTTTCAAGAAATTCCAAAGAAGGTGGTGGCCGAGGCAAACAATCAGTGCCCTTGGACTCCCACTACCAGAAACATGGTGACGTGGCTGGCAAAATCAAGGAAGATAGACAGGTTTCAAGTATGTTCGTCAGTTCTTCGCCGAAGGAAAACAGGAATGGAGCCGACAGATCCCCAGTTGTTAATGGTAGAGGTAGTAAACTCCAACGAGAGGTTTCGGAATTGGAGTTGGGTGAACTTCGTGAGGCTGTGCCCGAGGAAACAACAGTTAAGAAGCAATTTGAGAGAAAAAGTTCATTTAAGCAGTCAGAAAACAAACTGGGCACCAGGGATACCTGGGCTTCGGACTTCAGTAAATCAAAACCTGCAGGAAAGCCATCCTCACCAGATTTAAACTTGAAGTTTCCTAGTAATGCAGAAGGCTTAGTTAAAAAAAGGAACTACGAAGATCGTATTGAGGATTTAACGGGGTCTCAACAGAGAGCTCTGCAATCTCAGTCACTGCACCTTTCACGAGTAGATAATTCTGATGTGGGGCGCCCATTCAGCAGATCAGCAGATAACAGTAGTAAATCAACACAAAATGAAGTTGGAGGCAGACAAGGGATCAGTTTGGATGGCTATGGAGAAAGCAATAAGAAAGCACCTCCTAGGGCTTCTCAGCACCATGACTCTAAACGAGGGCCACTGTCCCACACCAATAAAGAAAGTAAAAGACTTTCATCTAGTACGATGATGGAACAGACTGATGTACGAAAGGATTCAATGTTGGCAGAGGGCACCGACAGTGATAGAAAAAGAAGGGATTCTTCTTCTGATGAAAATAGTTGTTCTTATACAAAGTATGAGAAGGATGAGCCTGAGCTCAAGGGACCAATAAAAGATTTCTCTCAGTATAAGGAGTATGTGCAAGAATATCATGATAAGTATGATAGCTACTGCTCGTTGAACAAGATCTTAGAGAGTTACAGGAATGAGTTCCTAAAGCTAGGGAAGGACCTTGAACTTGCTTCGGGCACAGAGAGATATTATAACATCTTGGACCAGCTGAAGGAGTCCTATCGTCAGTGTGGATCGAGACATAAGAGGCTCAAAAAGATATTTGTGGTGCTTCATGAGGAACTGAAGCACCTTAAGCAAAGGATCAAAGAGTTTGCACTCCCATACACGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

1227

Amino Acids

135.07

Weight (kDa)

8.2

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 1126 - 1221 4.4e-19 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2193, 3537
Acc36I ACCTGC 2 cut(s) 940, 2878
AccB1I GGYRCC 5 cut(s) 47, 280, 2828, 3042, 3284
AccB7I CCANNNNNTGG 1 cut(s) 1731
AccBSI CCGCTC 1 cut(s) 68
AccI GTMKAC 4 cut(s) 294, 802, 827, 1944
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 1538
AclWI GGATC 4 cut(s) 2670, 3119, 3586, 3656
AcoI YGGCCR 7 cut(s) 25, 31, 52, 69, 79, 210, 2536
AcsI RAATTY 4 cut(s) 341, 682, 1153, 2518
AcuI CTGAAG 5 cut(s) 1731, 1966, 2839, 3575, 3650
AcyI GRCGYC 2 cut(s) 48, 3043
AfaI GTAC 5 cut(s) 5, 2340, 2411, 3235, 3258
AfiI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 963, 1731, 1749, 2360, 2716, 3556
AflII CTTAAG 2 cut(s) 1139, 3638
AhlI ACTAGT 1 cut(s) 968
AjiI CACGTC 2 cut(s) 195, 2590
AjnI CCWGG 7 cut(s) 318, 1165, 1186, 1353, 1748, 2831, 2840
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
Alw21I GWGCWC 3 cut(s) 2426, 2992, 3372
Alw26I GTCTC 5 cut(s) 420, 1730, 2169, 2982, 3577
AlwI GGATC 4 cut(s) 2670, 3119, 3586, 3656
AlwNI CAGNNNCTG 2 cut(s) 2282, 3007
Ama87I CYCGRG 2 cut(s) 417, 2759
Aor13HI TCCGGA 1 cut(s) 1538
ApaI GGGCCC 1 cut(s) 2201
ApeKI GCWGC 5 cut(s) 125, 128, 656, 974, 1715
ApoI RAATTY 4 cut(s) 341, 682, 1153, 2518
ArsI GACNNNNNNTTYG 2 cut(s) 1937, 1969
Asp700I GAANNNNTTC 5 cut(s) 2442, 2797, 3265, 3310, 3482
AspA2I CCTAGG 1 cut(s) 3155
AspLEI GCGC 4 cut(s) 50, 309, 507, 3045
AsuC2I CCSGG 2 cut(s) 56, 209
AvaI CYCGRG 2 cut(s) 417, 2759
AvaII GGWCC 5 cut(s) 153, 327, 3377, 3502, 3547
AvrII CCTAGG 1 cut(s) 3155
BaeGI GKGCMC 6 cut(s) 2201, 2559, 2760, 2831, 3287, 3524
BanI GGYRCC 5 cut(s) 47, 280, 2828, 3042, 3284
BanII GRGCYC 5 cut(s) 1689, 2201, 2426, 2992, 3372
BauI CACGAG 1 cut(s) 3018
BbsI GAAGAC 1 cut(s) 1617
Bbv12I GWGCWC 3 cut(s) 2426, 2992, 3372
BbvI GCAGC 5 cut(s) 137, 140, 643, 986, 1702
BccI CCATC 7 cut(s) 168, 416, 461, 2228, 2890, 3116, 3235
BceAI ACGGC 7 cut(s) 22, 40, 46, 156, 197, 385, 678
BciT130I CCWGG 7 cut(s) 320, 1167, 1188, 1355, 1750, 2833, 2842
BciVI GTATCC 1 cut(s) 2830
BclI TGATCA 5 cut(s) 267, 1285, 1873, 2329, 2356
BcnI CCSGG 2 cut(s) 56, 209
BcoDI GTCTC 5 cut(s) 420, 1730, 2169, 2982, 3577
BcuI ACTAGT 1 cut(s) 968
BfmI CTRYAG 4 cut(s) 1371, 1965, 2405, 2871
BfoI RGCGCY 2 cut(s) 51, 3046
BfrI CTTAAG 2 cut(s) 1139, 3638
BfuAI ACCTGC 2 cut(s) 940, 2878
BfuI GTATCC 1 cut(s) 2830
BglI GCCNNNNNGGC 2 cut(s) 68, 209
BglII AGATCT 1 cut(s) 3459
BlnI CCTAGG 1 cut(s) 3155
BlpI GCTNAGC 1 cut(s) 1008
BmcAI AGTACT 1 cut(s) 2411
Bme1390I CCNGG 9 cut(s) 56, 209, 320, 1167, 1188, 1355, 1750, 2833, 2842
Bme18I GGWCC 5 cut(s) 153, 327, 3377, 3502, 3547
BmeT110I CYCGRG 2 cut(s) 417, 2759
BmgBI CACGTC 2 cut(s) 195, 2590
BmrFI CCNGG 9 cut(s) 56, 209, 320, 1167, 1188, 1355, 1750, 2833, 2842
BmrI ACTGGG 2 cut(s) 2675, 2834
BmsI GCATC 6 cut(s) 345, 854, 1735, 1789, 1819, 1930
BmuI ACTGGG 2 cut(s) 2675, 2834
BpiI GAAGAC 1 cut(s) 1617
BplI GAGNNNNNCTC 2 cut(s) 2237, 2269
BpmI CTGGAG 1 cut(s) 1149
Bpu10I CCTNAGC 2 cut(s) 1908, 3366
Bpu1102I GCTNAGC 1 cut(s) 1008
BpuEI CTTGAG 3 cut(s) 720, 894, 3356
BpuMI CCSGG 2 cut(s) 56, 209
BsaHI GRCGYC 2 cut(s) 48, 3043
BsaI GGTCTC 2 cut(s) 420, 2982
BsaWI WCCGGW 2 cut(s) 250, 1538
Bsc4I CCNNNNNNNGG 9 cut(s) 150, 214, 324, 963, 1731, 1749, 2360, 2716, 3556
Bse118I RCCGGY 3 cut(s) 50, 116, 239
Bse1I ACTGG 5 cut(s) 463, 991, 1332, 2681, 2829
Bse3DI GCAATG 2 cut(s) 379, 1003
BseAI TCCGGA 1 cut(s) 1538
BseBI CCWGG 7 cut(s) 320, 1167, 1188, 1355, 1750, 2833, 2842
BseLI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 963, 1731, 1749, 2360, 2716, 3556
BseMI GCAATG 2 cut(s) 379, 1003
BseMII CTCAG 8 cut(s) 825, 1899, 1998, 2235, 3014, 3179, 3357, 3410
BseNI ACTGG 5 cut(s) 463, 991, 1332, 2681, 2829
BseRI GAGGAG 4 cut(s) 87, 180, 233, 738
BseSI GKGCMC 6 cut(s) 2201, 2559, 2760, 2831, 3287, 3524
BseX3I CGGCCG 4 cut(s) 31, 52, 79, 210
BseXI GCAGC 5 cut(s) 137, 140, 643, 986, 1702
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 4 cut(s) 909, 993, 1778, 2993
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BshNI GGYRCC 5 cut(s) 47, 280, 2828, 3042, 3284
BsiEI CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BsiHKAI GWGCWC 3 cut(s) 2426, 2992, 3372
BsiHKCI CYCGRG 2 cut(s) 417, 2759
BsiSI CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1539
BslFI GGGAC 4 cut(s) 340, 1371, 3181, 3390
BslI CCNNNNNNNGG 9 cut(s) 150, 214, 324, 963, 1731, 1749, 2360, 2716, 3556
BsmAI GTCTC 5 cut(s) 420, 1730, 2169, 2982, 3577
BsmFI GGGAC 4 cut(s) 340, 1371, 3181, 3390
BsmI GAATGC 2 cut(s) 864, 1372
Bso31I GGTCTC 2 cut(s) 420, 2982
BsoBI CYCGRG 2 cut(s) 417, 2759
Bsp120I GGGCCC 1 cut(s) 2197
Bsp13I TCCGGA 1 cut(s) 1538
Bsp1407I TGTACA 1 cut(s) 2338
Bsp1720I GCTNAGC 1 cut(s) 1008
Bsp19I CCATGG 2 cut(s) 1730, 2398
BspCNI CTCAG 8 cut(s) 826, 1900, 1999, 2236, 3013, 3178, 3358, 3409
BspEI TCCGGA 1 cut(s) 1538
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 3 cut(s) 1924, 3424, 3619
BspMAI CTGCAG 3 cut(s) 1969, 2409, 2875
BspMI ACCTGC 2 cut(s) 940, 2878
BspPI GGATC 4 cut(s) 2670, 3119, 3586, 3656
BspT107I GGYRCC 5 cut(s) 47, 280, 2828, 3042, 3284
BspTI CTTAAG 2 cut(s) 1139, 3638
BspTNI GGTCTC 2 cut(s) 420, 2982
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 379, 1003
BsrFI RCCGGY 3 cut(s) 50, 116, 239
BsrGI TGTACA 1 cut(s) 2338
BsrI ACTGG 5 cut(s) 463, 991, 1332, 2681, 2829
BssAI RCCGGY 3 cut(s) 50, 116, 239
BssNI GRCGYC 2 cut(s) 48, 3043
BssSI CACGAG 1 cut(s) 3018
BssT1I CCWWGG 5 cut(s) 1059, 1730, 2398, 2559, 3155
Bst2BI CACGAG 1 cut(s) 3018
Bst2UI CCWGG 7 cut(s) 320, 1167, 1188, 1355, 1750, 2833, 2842
Bst6I CTCTTC 2 cut(s) 825, 1239
BstACI GRCGYC 2 cut(s) 48, 3043
BstAFI CTTAAG 2 cut(s) 1139, 3638
BstAPI GCANNNNNTGC 1 cut(s) 791
BstAUI TGTACA 1 cut(s) 2338
BstC8I GCNNGC 6 cut(s) 52, 118, 241, 584, 1296, 2596
BstDSI CCRYGG 6 cut(s) 28, 213, 660, 1388, 1730, 2398
BstEII GGTNACC 1 cut(s) 425
BstENI CCTNNNNNAGG 2 cut(s) 961, 2358
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 2 cut(s) 51, 3046
BstHHI GCGC 4 cut(s) 50, 309, 507, 3045
BstMAI GTCTC 5 cut(s) 420, 1730, 2169, 2982, 3577
BstMCI CGRYCG 5 cut(s) 34, 55, 82, 213, 566
BstNI CCWGG 7 cut(s) 320, 1167, 1188, 1355, 1750, 2833, 2842
BstNSI RCATGY 1 cut(s) 1916
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 9 cut(s) 54, 207, 318, 1165, 1186, 1353, 1748, 2831, 2840
BstSFI CTRYAG 4 cut(s) 1371, 1965, 2405, 2871
BstSLI GKGCMC 6 cut(s) 2201, 2559, 2760, 2831, 3287, 3524
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 5 cut(s) 137, 140, 643, 986, 1702
BstV2I GAAGAC 1 cut(s) 1617
BstX2I RGATCY 2 cut(s) 2675, 3459
BstXI CCANNNNNNTGG 2 cut(s) 1339, 2582
BstYI RGATCY 2 cut(s) 2675, 3459
BstZI CGGCCG 4 cut(s) 31, 52, 79, 210
BsuI GTATCC 1 cut(s) 2830
BtgI CCRYGG 6 cut(s) 28, 213, 660, 1388, 1730, 2398
BtrI CACGTC 2 cut(s) 195, 2590
BtsI GCAGTG 4 cut(s) 1040, 1537, 1609, 3005
BveI ACCTGC 2 cut(s) 940, 2878
Cac8I GCNNGC 6 cut(s) 52, 118, 241, 584, 1296, 2596
CaiI CAGNNNCTG 2 cut(s) 2282, 3007
CciI TCATGA 3 cut(s) 1924, 3424, 3619
CfoI GCGC 4 cut(s) 50, 309, 507, 3045
Cfr10I RCCGGY 3 cut(s) 50, 116, 239
CseI GACGC 1 cut(s) 298
Csp6I GTAC 5 cut(s) 4, 2339, 2410, 3234, 3257
CspCI CAANNNNNGTGG 2 cut(s) 2512, 2547
CviQI GTAC 5 cut(s) 4, 2339, 2410, 3234, 3257
DinI GGCGCC 2 cut(s) 49, 3044
DraI TTTAAA 2 cut(s) 712, 2898
EaeI YGGCCR 7 cut(s) 25, 31, 52, 69, 79, 210, 2536
EagI CGGCCG 4 cut(s) 31, 52, 79, 210
Eam1104I CTCTTC 2 cut(s) 825, 1239
EarI CTCTTC 2 cut(s) 825, 1239
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 3 cut(s) 2424, 2990, 3370
EclXI CGGCCG 4 cut(s) 31, 52, 79, 210
Eco130I CCWWGG 5 cut(s) 1059, 1730, 2398, 2559, 3155
Eco147I AGGCCT 2 cut(s) 1294, 1753
Eco24I GRGCYC 5 cut(s) 1689, 2201, 2426, 2992, 3372
Eco31I GGTCTC 2 cut(s) 420, 2982
Eco47I GGWCC 5 cut(s) 153, 327, 3377, 3502, 3547
Eco52I CGGCCG 4 cut(s) 31, 52, 79, 210
Eco53kI GAGCTC 3 cut(s) 2424, 2990, 3370
Eco57I CTGAAG 5 cut(s) 1731, 1966, 2839, 3575, 3650
Eco88I CYCGRG 2 cut(s) 417, 2759
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 3 cut(s) 2424, 2990, 3370
EcoNI CCTNNNNNAGG 2 cut(s) 961, 2358
EcoO109I RGGNCCY 5 cut(s) 327, 1449, 2197, 2198, 3502
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 7 cut(s) 318, 1165, 1186, 1353, 1748, 2831, 2840
EcoT14I CCWWGG 5 cut(s) 1059, 1730, 2398, 2559, 3155
EcoT38I GRGCYC 5 cut(s) 1689, 2201, 2426, 2992, 3372
EgeI GGCGCC 2 cut(s) 49, 3044
EheI GGCGCC 2 cut(s) 49, 3044
ErhI CCWWGG 5 cut(s) 1059, 1730, 2398, 2559, 3155
FaqI GGGAC 4 cut(s) 340, 1371, 3181, 3390
FauI CCCGC 3 cut(s) 143, 190, 341
FbaI TGATCA 5 cut(s) 267, 1285, 1873, 2329, 2356
FblI GTMKAC 4 cut(s) 294, 802, 827, 1944
FriOI GRGCYC 5 cut(s) 1689, 2201, 2426, 2992, 3372
GlaI GCGC 4 cut(s) 49, 308, 506, 3044
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 1149
HaeII RGCGCY 2 cut(s) 51, 3046
HapII CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1539
HgaI GACGC 1 cut(s) 298
HhaI GCGC 4 cut(s) 50, 309, 507, 3045
Hin1I GRCGYC 2 cut(s) 48, 3043
Hin6I GCGC 4 cut(s) 48, 307, 505, 3043
HinP1I GCGC 4 cut(s) 48, 307, 505, 3043
HincII GTYRAC 2 cut(s) 295, 540
HindII GTYRAC 2 cut(s) 295, 540
HindIII AAGCTT 1 cut(s) 1204
HpaII CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1539
Hpy166II GTNNAC 9 cut(s) 295, 540, 803, 828, 1660, 1945, 2339, 2705, 2741
Hpy8I GTNNAC 9 cut(s) 295, 540, 803, 828, 1660, 1945, 2339, 2705, 2741
Hpy99I CGWCG 2 cut(s) 299, 314
HpyCH4IV ACGT 4 cut(s) 194, 451, 1278, 2589
HpySE526I ACGT 4 cut(s) 194, 451, 1278, 2589
Hsp92I GRCGYC 2 cut(s) 48, 3043
HspAI GCGC 4 cut(s) 48, 307, 505, 3043
KasI GGCGCC 2 cut(s) 47, 3042
KflI GGGWCCC 1 cut(s) 327
Kpn2I TCCGGA 1 cut(s) 1538
KroI GCCGGC 3 cut(s) 50, 116, 239
KroNI GCCGGC 3 cut(s) 52, 118, 241
Ksp22I TGATCA 5 cut(s) 267, 1285, 1873, 2329, 2356
LmnI GCTCC 9 cut(s) 59, 65, 700, 751, 940, 1168, 1859, 2356, 2666
Lsp1109I GCAGC 5 cut(s) 137, 140, 643, 986, 1702
LweI GCATC 6 cut(s) 345, 854, 1735, 1789, 1819, 1930
MaeII ACGT 4 cut(s) 194, 451, 1278, 2589
MbiI CCGCTC 1 cut(s) 68
MfeI CAATTG 2 cut(s) 1361, 1803
MflI RGATCY 2 cut(s) 2675, 3459
Mly113I GGCGCC 2 cut(s) 48, 3043
MmeI TCCRAC 6 cut(s) 180, 546, 1357, 2297, 2734, 3076
MroI TCCGGA 1 cut(s) 1538
MroNI GCCGGC 3 cut(s) 50, 116, 239
MroXI GAANNNNTTC 5 cut(s) 2442, 2797, 3265, 3310, 3482
MslI CAYNNNNRTG 3 cut(s) 885, 2058, 2433
MspA1I CMGCKG 1 cut(s) 3553
MspCI CTTAAG 2 cut(s) 1139, 3638
MspI CCGG 9 cut(s) 51, 55, 63, 117, 209, 240, 251, 284, 1539
MspR9I CCNGG 9 cut(s) 56, 209, 320, 1167, 1188, 1355, 1750, 2833, 2842
MunI CAATTG 2 cut(s) 1361, 1803
Mva1269I GAATGC 2 cut(s) 864, 1372
MvaI CCWGG 7 cut(s) 320, 1167, 1188, 1355, 1750, 2833, 2842
MvnI CGCG 1 cut(s) 309
NaeI GCCGGC 3 cut(s) 52, 118, 241
NarI GGCGCC 2 cut(s) 48, 3043
NciI CCSGG 2 cut(s) 56, 209
NcoI CCATGG 2 cut(s) 1730, 2398
NgoMIV GCCGGC 3 cut(s) 50, 116, 239
NmeAIII GCCGAG 4 cut(s) 57, 107, 126, 2564
NmuCI GTSAC 9 cut(s) 425, 434, 1422, 1505, 1511, 1523, 1544, 2585, 3003
NspI RCATGY 1 cut(s) 1916
PagI TCATGA 3 cut(s) 1924, 3424, 3619
PasI CCCWGGG 1 cut(s) 319
PceI AGGCCT 2 cut(s) 1294, 1753
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PctI GAATGC 2 cut(s) 864, 1372
PdiI GCCGGC 3 cut(s) 52, 118, 241
PdmI GAANNNNTTC 5 cut(s) 2442, 2797, 3265, 3310, 3482
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 1731
PluTI GGCGCC 2 cut(s) 51, 3046
PpuMI RGGWCCY 2 cut(s) 327, 3502
PsiI TTATAA 2 cut(s) 2193, 3537
Psp124BI GAGCTC 3 cut(s) 2426, 2992, 3372
Psp5II RGGWCCY 2 cut(s) 327, 3502
Psp6I CCWGG 7 cut(s) 318, 1165, 1186, 1353, 1748, 2831, 2840
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 7 cut(s) 318, 1165, 1186, 1353, 1748, 2831, 2840
PspOMI GGGCCC 1 cut(s) 2197
PspPPI RGGWCCY 2 cut(s) 327, 3502
PsrI GAACNNNNNNTAC 2 cut(s) 1471, 1503
PstI CTGCAG 3 cut(s) 1969, 2409, 2875
PstNI CAGNNNCTG 2 cut(s) 2282, 3007
PsuI RGATCY 2 cut(s) 2675, 3459
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 3553
RsaI GTAC 5 cut(s) 5, 2340, 2411, 3235, 3258
RsaNI GTAC 5 cut(s) 4, 2339, 2410, 3234, 3257
RseI CAYNNNNRTG 3 cut(s) 885, 2058, 2433
SacI GAGCTC 3 cut(s) 2426, 2992, 3372
SalI GTCGAC 1 cut(s) 293
SbfI CCTGCAGG 1 cut(s) 2875
ScaI AGTACT 1 cut(s) 2411
ScrFI CCNGG 9 cut(s) 56, 209, 320, 1167, 1188, 1355, 1750, 2833, 2842
SdaI CCTGCAGG 1 cut(s) 2875
SfaNI GCATC 6 cut(s) 345, 854, 1735, 1789, 1819, 1930
SfcI CTRYAG 4 cut(s) 1371, 1965, 2405, 2871
SfoI GGCGCC 2 cut(s) 49, 3044
SinI GGWCC 5 cut(s) 153, 327, 3377, 3502, 3547
SmiMI CAYNNNNRTG 3 cut(s) 885, 2058, 2433
SmlI CTYRAG 5 cut(s) 735, 909, 1139, 3371, 3638
SmoI CTYRAG 5 cut(s) 735, 909, 1139, 3371, 3638
SpeI ACTAGT 1 cut(s) 968
Sse8387I CCTGCAGG 1 cut(s) 2875
SseBI AGGCCT 2 cut(s) 1294, 1753
SspDI GGCGCC 2 cut(s) 47, 3042
SspI AATATT 1 cut(s) 868
SstI GAGCTC 3 cut(s) 2426, 2992, 3372
StuI AGGCCT 2 cut(s) 1294, 1753
StyD4I CCNGG 9 cut(s) 54, 207, 318, 1165, 1186, 1353, 1748, 2831, 2840
StyI CCWWGG 5 cut(s) 1059, 1730, 2398, 2559, 3155
TaiI ACGT 4 cut(s) 197, 454, 1281, 2592
TaqI TCGA 5 cut(s) 163, 294, 312, 1003, 3581
TatI WGTACW 2 cut(s) 2338, 2409
TauI GCSGC 5 cut(s) 12, 48, 71, 203, 206
TseFI GTSAC 9 cut(s) 425, 434, 1422, 1505, 1511, 1523, 1544, 2585, 3003
TseI GCWGC 5 cut(s) 125, 128, 656, 974, 1715
Tsp45I GTSAC 9 cut(s) 425, 434, 1422, 1505, 1511, 1523, 1544, 2585, 3003
TspGWI ACGGA 3 cut(s) 813, 1286, 2108
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 1731
Vha464I CTTAAG 2 cut(s) 1139, 3638
VpaK11BI GGWCC 5 cut(s) 153, 327, 3377, 3502, 3547
XagI CCTNNNNNAGG 2 cut(s) 961, 2358
XapI RAATTY 4 cut(s) 341, 682, 1153, 2518
XceI RCATGY 1 cut(s) 1916
XcmI CCANNNNNNNNNTGG 1 cut(s) 2038
XmaJI CCTAGG 1 cut(s) 3155
XmiI GTMKAC 4 cut(s) 294, 802, 827, 1944
XmnI GAANNNNTTC 5 cut(s) 2442, 2797, 3265, 3310, 3482
ZrmI AGTACT 1 cut(s) 2411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.