Rorug02G0373400

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005746
Physical Location & Seq
Reverse (-)
47638834 .. 47642859
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0373400.1

Sequence Viewer

Length: 3000 bp
ATGGCTGAAGCACTTATTTCCGTTCTCCTAGAACAATTGGCTTCAATCATCCGTCAACAGATACAACAACAAGTGAAATTGGTAGTTGATGTTAAGATAGAAGTTGCAAAGCTCACCCACAATTTCCGAGCTATAGAAGCCTTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGCTTCTGTTAAATTATGGCTGGATGATTTAAAGGACGTGTCCAACGAGATGGAGGACGTGTTGGATGATTGGAACACTGAAATTCTGAGGCTTCAAATTGAGAAACAAGAGAAAGAAGCTGGAAATGCTCTTGATACGACTAAGAAGGTATGTCTATGCATTCCTACTGCTTTCTTTAAATCAGGCCAAGTTAGTCGAGTTATTTTTCGTCACGACATTGCTCAAAAGATTAAAGATCTCAATGAAAGGTTAGCAACAATTGCTAATACGAGGCAAAATTTTAACTTTCAGTACACAAAAAGTGGTACTGAACATATTGAGCGACAAAAGACTACTTCTTTTGTCGATCAAACATTTGGTCGGGTAGATGAAAAAGAATTATTGGTGGGCAAGTTGTTGAGTGAGAGTAATCCTGAAGGGCAGAACCCCCTTGTCATCCCTATTGTAGGAATGGGTGGAATCGGCAAAACAACCCTTTCCCAACTAGCATATAATGACAAAAGAGTGAAGGCCAATTTCACAAATAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGCTCAACATAGCCAAAGCCATTATTGGAGCCTTTGATGGAAATGTCAATCCCATTTCAAATGACCTAGAAGCTTTCTTCCAATGTGTGCGCAAGTCTATCGAGGGGAAAAAGTTTCTCCTCATCTTAGATGACGTGTGGAACCAAGACTATAGGAAGTGGGAAAATTTGAAGCTACCTTTACAAAATGGTGCTGTGGGTAGTAAAATAATAGTCACTACACGAAAAGAAGAAGTGGCTAGGATGATGGGATCAACATCCAATAACACTATCAATTTGAAGGTGTTGAGTGACGAAAATTGTTGGTCATTGTTCGCTGGAATTGCCTTTACCAATAGAAACCAAGATGAGTGTCAAAATTTAGAACCTATTGGTAAGGAAATTGTGAAGAAGTGCAAAGGGTTGCCTCTTGTTGCCAAGACTTTAGGTGGTCTCATGCGGTGTAAGAAAACAAAGAAAGAATGGCAAGATGTTTTGAGTAGTAAGATATGGGAGTTAGATATAGTGGAGCAACAAGTTTTCCAACCGCTATTACTAAGTTATTATGATTTAACTCCAATGATTAAGCGTTGTTTATTATGTTGTGTTACTTTCCCAAAAGACCATGTAATTAAGAAAAATGTTTTGATTGAGTTGTGGATGTCACAAAGTTTTCTTGGTTCAGTTGGGAATAAAGAAAAGACAATAATAGAGGTTGGAGAATCATATTTTGATAACTTAGTAATGCGATATTTCTTCCAGAATTTCGAGCAAGATAAATTTGGAGATATTAAACAGTGTCAAATGCATGATATTGTACATGACTTTCTCCAATATTTAACCAAGAATGAATGCTTAATCGTTGAGTTCAAAGGTGGGGAGGAGAGAATAGAATTACCAGCGGACAATAAGCTTGGTCATTTGACCATAATGTTTGCACCCGGAGGACCTTTTCCCCTTTCTTTTGACCACTGCCAACGTCTGCGTACCATTACAACATTTAATTGTGAAATTACAAGTCTCAGCCGAGAGTTGATTTTACAATTAAAATGCGTGAGGACGTTGAATTTGAGTGACAACCTTTTCGGAGAAGTTCCGGACGAGATTGGCGTGTTGGTGCACTTGAGGTATTTGGATTTATCTCGTAATCGGAGGCTGAAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGATGGGTGCGAGAAGGTAGAAAAGTTACCCGAGGCCATGGGAAAGTTGGCCAGCTTGCAGATTCTTCATGCTAAGGGTATTCGGCTGAAGTTGCCCAAATCAATTGCGAGGTTGAAAAGTCTACGGACGCTAGATCTGCCTGTTTTCATTGTGGGTGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGAAGCTTAGGATCTCATTGGGGGGCAAATTGAAAGAGAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCGTTTGAGACTAAGGTTTCTCCTCATGGAGAGGGGCCAGAGTACAATCGAGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTGAATCCTTAGAGATTGAAGGTTACGGTGGCAGCACCCTGTGCCCCAGTTGGACCTCCTCTTTAATTAACTTGAAAAGCCTGACCTTCTCTGCCTGTGTTTGTAAGTATGTGCCTCTTTCGGTTTTGGGCTACTTGGGGTCCCTTGAGACACTCAGATTTGAACGCATGTATGAAGTGAAGAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACTCGAGTTCTCTTCCATGTGGGAGTGGGAAGAATGGGATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCTCTAGATGCGATAAGCTGAAGACACTGCCGGACTTCCTTCGGAGGAAGACGCCGCTGCTTCAGAATTTGATCATCACCTGGTCTCCCATTCTCTCCCAAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTTCAAGATTTCTCACATCCCAAACATCAAAATTGATCGCAAAATTGTACAAAAAAGGGAGTTTGGATTTGATCGCCCATCTGATTTCTTGGGATATCATCACTCCTCTTCTTTTTTATACCGCAGCTCCTTAAAAGCGGCTCCAGATTTGCATGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCTTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

999

Amino Acids

114.06

Weight (kDa)

8.23

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 1.1e-19 Rx N-terminal domain
NB-ARC PF00931 184 - 358 3.4e-36 NB-ARC domain
WHD_DRP PF23559 443 - 514 2.6e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 566 - 887 1.9e-28 Leucine-rich repeat region
LRR_8 PF13855 590 - 645 3.1e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 700 - 827 4e-25 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 827
AccI GTMKAC 1 cut(s) 2047
AccIII TCCGGA 1 cut(s) 1810
AciI CCGC 7 cut(s) 1174, 1262, 1616, 2186, 2714, 2911, 2927
AclWI GGATC 3 cut(s) 994, 2150, 2598
AcoI YGGCCR 1 cut(s) 1974
AcsI RAATTY 9 cut(s) 258, 454, 901, 1093, 1477, 1493, 1780, 2302, 2725
AcuI CTGAAG 7 cut(s) 27, 612, 1892, 2033, 2111, 2699, 2705
AcyI GRCGYC 1 cut(s) 2711
AdeI CACNNNGTG 1 cut(s) 2352
AfaI GTAC 7 cut(s) 470, 484, 1533, 1702, 2266, 2510, 2838
AfiI CCNNNNNNNGG 1 cut(s) 623
AflIII ACRYGT 3 cut(s) 213, 234, 870
AjiI CACGTC 3 cut(s) 214, 235, 871
AjnI CCWGG 2 cut(s) 2738, 2965
AjuI GAANNNNNNNTTGG 2 cut(s) 2183, 2215
Alw21I GWGCWC 2 cut(s) 741, 1836
Alw26I GTCTC 7 cut(s) 724, 1172, 1739, 2106, 2224, 2453, 2748
Alw44I GTGCAC 1 cut(s) 1832
AlwI GGATC 3 cut(s) 994, 2150, 2598
Ama87I CYCGRG 2 cut(s) 1955, 2555
Aor13HI TCCGGA 1 cut(s) 1810
AoxI GGCC 6 cut(s) 361, 687, 1959, 1974, 2257, 2779
ApaLI GTGCAC 1 cut(s) 1832
ApeKI GCWGC 4 cut(s) 2174, 2343, 2716, 2913
ApoI RAATTY 9 cut(s) 258, 454, 901, 1093, 1477, 1493, 1780, 2302, 2725
ArsI GACNNNNNNTTYG 6 cut(s) 520, 552, 1765, 1781, 1797, 1813
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 5 cut(s) 1661, 2257, 2364, 2451, 2780
AsuC2I CCSGG 2 cut(s) 1656, 2783
AsuHPI GGTGA 5 cut(s) 106, 2093, 2215, 2613, 2728
AvaI CYCGRG 2 cut(s) 1955, 2555
AvaII GGWCC 3 cut(s) 1661, 2364, 2451
BaeGI GKGCMC 2 cut(s) 1836, 2357
BalI TGGCCA 1 cut(s) 1976
BanII GRGCYC 1 cut(s) 741
BbsI GAAGAC 2 cut(s) 2687, 2714
Bbv12I GWGCWC 2 cut(s) 741, 1836
BbvI GCAGC 4 cut(s) 2161, 2355, 2703, 2925
BccI CCATC 6 cut(s) 220, 767, 976, 1922, 2666, 2875
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BciT130I CCWGG 2 cut(s) 2740, 2967
BclI TGATCA 2 cut(s) 2518, 2730
BcnI CCSGG 2 cut(s) 1656, 2783
BcoDI GTCTC 7 cut(s) 724, 1172, 1739, 2106, 2224, 2453, 2748
BfaI CTAG 6 cut(s) 29, 662, 803, 975, 2057, 2664
BfmI CTRYAG 3 cut(s) 132, 886, 2996
BglII AGATCT 2 cut(s) 412, 2059
BisI GCNGC 6 cut(s) 2175, 2344, 2714, 2717, 2914, 2928
BlsI GCNGC 6 cut(s) 2176, 2345, 2715, 2718, 2915, 2929
BmcAI AGTACT 1 cut(s) 2510
Bme1390I CCNGG 4 cut(s) 1656, 2740, 2783, 2967
Bme18I GGWCC 3 cut(s) 1661, 2364, 2451
BmeT110I CYCGRG 2 cut(s) 1955, 2555
BmgBI CACGTC 3 cut(s) 214, 235, 871
BmgT120I GGNCC 5 cut(s) 1661, 2257, 2364, 2451, 2780
BmiI GGNNCC 6 cut(s) 766, 878, 2258, 2452, 2453, 2931
BmrFI CCNGG 4 cut(s) 1656, 2740, 2783, 2967
BmrI ACTGGG 1 cut(s) 2352
BmsI GCATC 4 cut(s) 142, 2173, 2596, 2657
BmuI ACTGGG 1 cut(s) 2352
BpiI GAAGAC 2 cut(s) 2687, 2714
BpmI CTGGAG 1 cut(s) 2916
Bpu10I CCTNAGC 2 cut(s) 1998, 2138
BpuEI CTTGAG 2 cut(s) 1858, 2477
BpuMI CCSGG 2 cut(s) 1656, 2783
BsaBI GATNNNNATC 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 2711
BsaI GGTCTC 2 cut(s) 1172, 2748
BsaJI CCNNGG 2 cut(s) 1956, 1962
BsaWI WCCGGW 1 cut(s) 1810
BsaXI ACNNNNNCTCC 6 cut(s) 221, 251, 2728, 2758, 2900, 2930
Bsc4I CCNNNNNNNGG 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 2358
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 991
BseAI TCCGGA 1 cut(s) 1810
BseBI CCWGG 2 cut(s) 2740, 2967
BseDI CCNNGG 2 cut(s) 1956, 1962
BseGI GGATG 9 cut(s) 48, 205, 247, 612, 984, 992, 1380, 2805, 2986
BseJI GATNNNNATC 1 cut(s) 991
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 4 cut(s) 254, 735, 1750, 2479
BseNI ACTGG 1 cut(s) 2358
BseRI GAGGAG 6 cut(s) 173, 845, 1610, 2234, 2359, 2884
BseSI GKGCMC 2 cut(s) 1836, 2357
BseXI GCAGC 4 cut(s) 2161, 2355, 2703, 2925
BshFI GGCC 6 cut(s) 363, 689, 1961, 1976, 2259, 2781
BsiHKAI GWGCWC 2 cut(s) 741, 1836
BsiHKCI CYCGRG 2 cut(s) 1955, 2555
BsiSI CCGG 4 cut(s) 1656, 1811, 2690, 2783
BslFI GGGAC 1 cut(s) 2437
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 7 cut(s) 724, 1172, 1739, 2106, 2224, 2453, 2748
BsmFI GGGAC 1 cut(s) 2437
BsmI GAATGC 3 cut(s) 336, 1571, 2293
BsnI GGCC 6 cut(s) 363, 689, 1961, 1976, 2259, 2781
Bso31I GGTCTC 2 cut(s) 1172, 2748
BsoBI CYCGRG 2 cut(s) 1955, 2555
Bsp1286I GDGCHC 3 cut(s) 741, 1836, 2357
Bsp13I TCCGGA 1 cut(s) 1810
Bsp1407I TGTACA 2 cut(s) 1531, 2836
Bsp19I CCATGG 1 cut(s) 1962
BspACI CCGC 7 cut(s) 1174, 1262, 1616, 2186, 2714, 2911, 2927
BspANI GGCC 6 cut(s) 363, 689, 1961, 1976, 2259, 2781
BspCNI CTCAG 4 cut(s) 255, 734, 1749, 2478
BspEI TCCGGA 1 cut(s) 1810
BspHI TCATGA 1 cut(s) 2593
BspLI GGNNCC 6 cut(s) 766, 878, 2258, 2452, 2453, 2931
BspPI GGATC 3 cut(s) 994, 2150, 2598
BspTNI GGTCTC 2 cut(s) 1172, 2748
BsrDI GCAATG 1 cut(s) 393
BsrGI TGTACA 2 cut(s) 1531, 2836
BsrI ACTGG 1 cut(s) 2358
BssECI CCNNGG 2 cut(s) 1956, 1962
BssNI GRCGYC 1 cut(s) 2711
BssT1I CCWWGG 1 cut(s) 1962
Bst2UI CCWGG 2 cut(s) 2740, 2967
Bst4CI ACNGT 2 cut(s) 1512, 2339
Bst6I CTCTTC 2 cut(s) 2569, 2902
BstACI GRCGYC 1 cut(s) 2711
BstAPI GCANNNNNTGC 3 cut(s) 437, 1918, 2352
BstAUI TGTACA 2 cut(s) 1531, 2836
BstC8I GCNNGC 2 cut(s) 1978, 1982
BstDSI CCRYGG 1 cut(s) 1962
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 9 cut(s) 48, 205, 247, 612, 984, 992, 1380, 2805, 2986
BstHHI GCGC 1 cut(s) 828
BstMAI GTCTC 7 cut(s) 724, 1172, 1739, 2106, 2224, 2453, 2748
BstNI CCWGG 2 cut(s) 2740, 2967
BstNSI RCATGY 1 cut(s) 2482
BstSCI CCNGG 4 cut(s) 1654, 2738, 2781, 2965
BstSFI CTRYAG 3 cut(s) 132, 886, 2996
BstSLI GKGCMC 2 cut(s) 1836, 2357
BstV1I GCAGC 4 cut(s) 2161, 2355, 2703, 2925
BstV2I GAAGAC 2 cut(s) 2687, 2714
BstX2I RGATCY 3 cut(s) 412, 2059, 2142
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 3 cut(s) 412, 2059, 2142
BsuRI GGCC 6 cut(s) 363, 689, 1961, 1976, 2259, 2781
BtgI CCRYGG 1 cut(s) 1962
BtrI CACGTC 3 cut(s) 214, 235, 871
BtsCI GGATG 9 cut(s) 48, 205, 247, 612, 984, 992, 1380, 2805, 2986
BtsI GCAGTG 2 cut(s) 1684, 2684
BtsIMutI CAGTG 4 cut(s) 252, 1517, 1684, 2684
Cac8I GCNNGC 2 cut(s) 1978, 1982
CciI TCATGA 1 cut(s) 2593
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 5 cut(s) 1661, 2257, 2364, 2451, 2780
CseI GACGC 2 cut(s) 2062, 2719
CsiI ACCWGGT 1 cut(s) 2738
Csp6I GTAC 7 cut(s) 469, 483, 1532, 1701, 2265, 2509, 2837
CviQI GTAC 7 cut(s) 469, 483, 1532, 1701, 2265, 2509, 2837
DraI TTTAAA 2 cut(s) 207, 355
DraIII CACNNNGTG 1 cut(s) 2352
EaeI YGGCCR 1 cut(s) 1974
Eam1104I CTCTTC 2 cut(s) 2569, 2902
EarI CTCTTC 2 cut(s) 2569, 2902
Ecl136II GAGCTC 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 1962
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 2 cut(s) 1172, 2748
Eco32I GATATC 1 cut(s) 2885
Eco47I GGWCC 3 cut(s) 1661, 2364, 2451
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 7 cut(s) 27, 612, 1892, 2033, 2111, 2699, 2705
Eco88I CYCGRG 2 cut(s) 1955, 2555
EcoICRI GAGCTC 1 cut(s) 739
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoO109I RGGNCCY 2 cut(s) 1661, 2451
EcoRII CCWGG 2 cut(s) 2738, 2965
EcoRV GATATC 1 cut(s) 2885
EcoT14I CCWWGG 1 cut(s) 1962
EcoT22I ATGCAT 2 cut(s) 338, 1524
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 1962
FaqI GGGAC 1 cut(s) 2437
FbaI TGATCA 2 cut(s) 2518, 2730
FblI GTMKAC 1 cut(s) 2047
Fnu4HI GCNGC 6 cut(s) 2175, 2344, 2714, 2717, 2914, 2928
FokI GGATG 9 cut(s) 35, 212, 254, 599, 979, 991, 1387, 2792, 2993
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 6 cut(s) 2175, 2344, 2714, 2717, 2914, 2928
FspBI CTAG 6 cut(s) 29, 662, 803, 975, 2057, 2664
FspI TGCGCA 1 cut(s) 827
GlaI GCGC 1 cut(s) 827
GluI GCNGC 6 cut(s) 2175, 2344, 2714, 2717, 2914, 2928
GsuI CTGGAG 1 cut(s) 2916
HaeIII GGCC 6 cut(s) 363, 689, 1961, 1976, 2259, 2781
HapII CCGG 4 cut(s) 1656, 1811, 2690, 2783
HgaI GACGC 2 cut(s) 2062, 2719
HhaI GCGC 1 cut(s) 828
Hin1I GRCGYC 1 cut(s) 2711
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HindIII AAGCTT 3 cut(s) 807, 1625, 2135
HinfI GANTC 5 cut(s) 636, 1436, 1987, 2315, 2970
HpaII CCGG 4 cut(s) 1656, 1811, 2690, 2783
HphI GGTGA 5 cut(s) 106, 2093, 2215, 2613, 2728
Hpy166II GTNNAC 5 cut(s) 56, 471, 1834, 2048, 2206
Hpy8I GTNNAC 5 cut(s) 56, 471, 1834, 2048, 2206
HpyCH4III ACNGT 2 cut(s) 1512, 2339
HpyCH4IV ACGT 5 cut(s) 213, 234, 870, 1693, 1775
HpySE526I ACGT 5 cut(s) 213, 234, 870, 1693, 1775
Hsp92I GRCGYC 1 cut(s) 2711
HspAI GCGC 1 cut(s) 826
KflI GGGWCCC 1 cut(s) 2451
Kpn2I TCCGGA 1 cut(s) 1810
Ksp22I TGATCA 2 cut(s) 2518, 2730
LmnI GCTCC 4 cut(s) 764, 1243, 2921, 2935
Lsp1109I GCAGC 4 cut(s) 2161, 2355, 2703, 2925
LweI GCATC 4 cut(s) 142, 2173, 2596, 2657
MabI ACCWGGT 1 cut(s) 2738
MaeI CTAG 6 cut(s) 29, 662, 803, 975, 2057, 2664
MaeII ACGT 5 cut(s) 213, 234, 870, 1693, 1775
MfeI CAATTG 3 cut(s) 35, 435, 2028
MflI RGATCY 3 cut(s) 412, 2059, 2142
MhlI GDGCHC 3 cut(s) 741, 1836, 2357
MlsI TGGCCA 1 cut(s) 1976
MluNI TGGCCA 1 cut(s) 1976
MmeI TCCRAC 6 cut(s) 219, 243, 1282, 1411, 2342, 2479
Mox20I TGGCCA 1 cut(s) 1976
Mph1103I ATGCAT 2 cut(s) 338, 1524
MroI TCCGGA 1 cut(s) 1810
MscI TGGCCA 1 cut(s) 1976
Msp20I TGGCCA 1 cut(s) 1976
MspA1I CMGCKG 2 cut(s) 1616, 2716
MspI CCGG 4 cut(s) 1656, 1811, 2690, 2783
MspR9I CCNGG 4 cut(s) 1656, 2740, 2783, 2967
MunI CAATTG 3 cut(s) 35, 435, 2028
Mva1269I GAATGC 3 cut(s) 336, 1571, 2293
MvaI CCWGG 2 cut(s) 2740, 2967
NciI CCSGG 2 cut(s) 1656, 2783
NcoI CCATGG 1 cut(s) 1962
NlaIV GGNNCC 6 cut(s) 766, 878, 2258, 2452, 2453, 2931
NmeAIII GCCGAG 1 cut(s) 1766
NmuCI GTSAC 7 cut(s) 386, 949, 1025, 1377, 1787, 2619, 2983
NsbI TGCGCA 1 cut(s) 827
NsiI ATGCAT 2 cut(s) 338, 1524
NspI RCATGY 1 cut(s) 2482
PacI TTAATTAA 1 cut(s) 2379
PaeR7I CTCGAG 1 cut(s) 2555
PagI TCATGA 1 cut(s) 2593
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 1821
PctI GAATGC 3 cut(s) 336, 1571, 2293
PfeI GAWTC 5 cut(s) 636, 1436, 1987, 2315, 2970
PkrI GCNGC 6 cut(s) 2176, 2345, 2715, 2718, 2915, 2929
PpuMI RGGWCCY 2 cut(s) 1661, 2451
Psp124BI GAGCTC 1 cut(s) 741
Psp5II RGGWCCY 2 cut(s) 1661, 2451
Psp6I CCWGG 2 cut(s) 2738, 2965
PspGI CCWGG 2 cut(s) 2738, 2965
PspN4I GGNNCC 6 cut(s) 766, 878, 2258, 2452, 2453, 2931
PspPI GGNCC 5 cut(s) 1661, 2257, 2364, 2451, 2780
PspPPI RGGWCCY 2 cut(s) 1661, 2451
PspXI VCTCGAGB 1 cut(s) 2555
PsuI RGATCY 3 cut(s) 412, 2059, 2142
RsaI GTAC 7 cut(s) 470, 484, 1533, 1702, 2266, 2510, 2838
RsaNI GTAC 7 cut(s) 469, 483, 1532, 1701, 2265, 2509, 2837
SacI GAGCTC 1 cut(s) 741
SatI GCNGC 6 cut(s) 2175, 2344, 2714, 2717, 2914, 2928
Sau96I GGNCC 5 cut(s) 1661, 2257, 2364, 2451, 2780
ScaI AGTACT 1 cut(s) 2510
ScrFI CCNGG 4 cut(s) 1656, 2740, 2783, 2967
SduI GDGCHC 3 cut(s) 741, 1836, 2357
SexAI ACCWGGT 1 cut(s) 2738
SfaNI GCATC 4 cut(s) 142, 2173, 2596, 2657
SfcI CTRYAG 3 cut(s) 132, 886, 2996
Sfr274I CTCGAG 1 cut(s) 2555
SinI GGWCC 3 cut(s) 1661, 2364, 2451
SlaI CTCGAG 1 cut(s) 2555
SmlI CTYRAG 3 cut(s) 1837, 2456, 2555
SmoI CTYRAG 3 cut(s) 1837, 2456, 2555
SsiI CCGC 7 cut(s) 1174, 1262, 1616, 2186, 2714, 2911, 2927
SspI AATATT 2 cut(s) 1550, 2949
SspMI CTAG 6 cut(s) 29, 662, 803, 975, 2057, 2664
SstI GAGCTC 1 cut(s) 741
StyD4I CCNGG 4 cut(s) 1654, 2738, 2781, 2965
StyI CCWWGG 1 cut(s) 1962
TaaI ACNGT 2 cut(s) 1512, 2339
TaiI ACGT 5 cut(s) 216, 237, 873, 1696, 1778
TaqI TCGA 6 cut(s) 373, 522, 837, 1482, 2271, 2556
TatI WGTACW 5 cut(s) 468, 1531, 2264, 2508, 2836
TauI GCSGC 2 cut(s) 2716, 2930
TfiI GAWTC 5 cut(s) 636, 1436, 1987, 2315, 2970
TscAI CASTG 4 cut(s) 259, 1517, 1691, 2691
TseFI GTSAC 7 cut(s) 386, 949, 1025, 1377, 1787, 2619, 2983
TseI GCWGC 4 cut(s) 2174, 2343, 2716, 2913
Tsp45I GTSAC 7 cut(s) 386, 949, 1025, 1377, 1787, 2619, 2983
TspDTI ATGAA 8 cut(s) 435, 561, 1578, 1982, 2062, 2499, 2604, 2623
TspGWI ACGGA 3 cut(s) 10, 41, 2065
TspRI CASTG 4 cut(s) 259, 1517, 1691, 2691
VneI GTGCAC 1 cut(s) 1832
VpaK11BI GGWCC 3 cut(s) 1661, 2364, 2451
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 9 cut(s) 258, 454, 901, 1093, 1477, 1493, 1780, 2302, 2725
XbaI TCTAGA 1 cut(s) 2663
XceI RCATGY 1 cut(s) 2482
XcmI CCANNNNNNNNNTGG 1 cut(s) 1969
XhoI CTCGAG 1 cut(s) 2555
XmiI GTMKAC 1 cut(s) 2047
XspI CTAG 6 cut(s) 29, 662, 803, 975, 2057, 2664
ZrmI AGTACT 1 cut(s) 2510
Zsp2I ATGCAT 2 cut(s) 338, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.