FvH4_6g33830
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014772
Physical Location & Seq
Reverse (-)
26796634 .. 26798795
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33830.t1

Sequence Viewer

Length: 1152 bp
ATGGGACATCACTCATGCTGCAACAAACAGAAAGTGAAGAGGGGGCTATGGTCCCCGGAAGAAGATGAGAAGCTCATCAACTACATTACGAATTACGGCCATGGCTGCTGGAGCTCAGTTCCAAAACTTGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGACTGAGATGGATAAATTATCTGAGACCTGACTTGAAACGCGGGAGTTTCTCTGCCCAAGAAGCTGCACTCATCATTCAACTCCATAGCATTTTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAGAAGAAGCTTCTGCCCCATGAAGTCATTCCTGCTTTTGCCTCACCATTCTCTCATTTTCTTAACTCTAGTACTGCTGGTTCTGATCAGGAAAGTTTCTTCACTACTCTAATCACAAACCCTAATTTGGGTCTTCAACAAGAACAGCTTTACCTTCCCATTCCCACACCACTGCCACCATCTACTTTCTACCATGGTGATCATAGCATATTCAAGTTAGACTACACCAATTACAGTTCCAACCGTCTTCATTTTGCTGCCCCCATTCAGTTACCATCAAACTATTCGTCGTCATATGACTCCTCGTGGTCATTGGGTTATCAACCCCATCTATTTGATTCAAATAATCAACAAGCTCATATTTTCAACAGCATTGAAGTTTCTCCACACTTTAGTATTGGAAATGAGCTTATGGTTCCAAGTGTGGCATCTCTACCAGGTTATGATGATCATGAGAATCTATCAGTTTTACCCACAATGCCTCAGTTTTGTGAGATCAACATTGATGGTAATTCTTGCAGAGAAATACCATTTGATCCACCTGATGACCATCCTCCACAAAAACTTGACTCACTTGCAAAATTATCATCATGTTTCGGCCCATTTGGTGATCATGGCTCTTATAATCCTTTCGATATGCAGCTTCCGTCAAATCAATTGGAAATAGTTGATCCCGTCGTATCATCATTGCCAATATTATCACAGCCTGCTTTCTCATCATCTGCGTCTTCATCCTTGTCGCCACCGCTACCGAGTAGTCAATTATTCATCGCGAACCCTAATGTTCTTTCAAGCTTGGGAAGCATGGCAAGCTAG

Protein Analysis

384

Amino Acids

42.49

Weight (kDa)

6.12

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 6.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 5.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014772)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33830
malus_domestica MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica Prupe.3G046900_v2.0.a1
pyrus_communis pycom07g10290
rosa_chinensis RchiOBHm_Chr2g0143681
rosa_laevigata RLG00000020059
rosa_multiflora Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii Rroxscaffold_2G00101530
rosa_rugosa Rorug02G0384600
rosa_samantha Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana Rw2G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AccII CGCG 2 cut(s) 201, 1109
AciI CCGC 2 cut(s) 201, 1082
AclWI GGATC 2 cut(s) 866, 1001
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 463, 464
AgsI TTSAA 8 cut(s) 196, 239, 473, 550, 678, 703, 713, 1128
AjnI CCWGG 2 cut(s) 289, 772
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 140, 178
AlwI GGATC 2 cut(s) 866, 1001
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 2 cut(s) 97, 934
ApeKI GCWGC 6 cut(s) 18, 105, 156, 224, 593, 976
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 51, 935
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 372, 545, 956
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 2 cut(s) 116, 271
BauI CACGAG 1 cut(s) 640
BbsI GAAGAC 3 cut(s) 461, 575, 1056
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 6 cut(s) 5, 92, 143, 211, 580, 988
BccI CCATC 7 cut(s) 162, 258, 523, 619, 672, 836, 894
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 291, 774
BclI TGATCA 4 cut(s) 421, 535, 784, 946
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 140, 178
BfaI CTAG 2 cut(s) 405, 1150
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 6 cut(s) 19, 106, 157, 225, 594, 977
BlsI GCNGC 6 cut(s) 20, 107, 158, 226, 595, 978
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 56, 291, 774
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 51, 935
BmiI GGNNCC 2 cut(s) 53, 753
BmrFI CCNGG 3 cut(s) 56, 291, 774
BmsI GCATC 1 cut(s) 773
BpiI GAAGAC 3 cut(s) 461, 575, 1056
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 885
BsaI GGTCTC 2 cut(s) 140, 178
BsaJI CCNNGG 3 cut(s) 54, 100, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 464
Bse3DI GCAATG 1 cut(s) 1022
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 2 cut(s) 291, 774
BseDI CCNNGG 3 cut(s) 54, 100, 529
BseGI GGATG 2 cut(s) 886, 1067
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 2 cut(s) 463, 464
BseMI GCAATG 1 cut(s) 1022
BseMII CTCAG 5 cut(s) 129, 155, 173, 284, 833
BseRI GAGGAG 1 cut(s) 628
BseXI GCAGC 6 cut(s) 5, 92, 143, 211, 580, 988
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 201, 1109
BshFI GGCC 2 cut(s) 99, 936
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 18, 37
BslI CCNNNNNNNGG 2 cut(s) 463, 464
BsmAI GTCTC 2 cut(s) 140, 178
BsmFI GGGAC 2 cut(s) 18, 37
BsnI GGCC 2 cut(s) 99, 936
Bso31I GGTCTC 2 cut(s) 140, 178
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 116, 271
Bsp143I GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
Bsp19I CCATGG 2 cut(s) 100, 529
Bsp68I TCGCGA 1 cut(s) 1109
BspACI CCGC 2 cut(s) 201, 1082
BspANI GGCC 2 cut(s) 99, 936
BspCNI CTCAG 5 cut(s) 128, 156, 174, 283, 832
BspFNI CGCG 2 cut(s) 201, 1109
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 53, 753
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 866, 1001
BspTNI GGTCTC 2 cut(s) 140, 178
BsrDI GCAATG 1 cut(s) 1022
BssECI CCNNGG 3 cut(s) 54, 100, 529
BssMI GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
BssSI CACGAG 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 100, 529
Bst2BI CACGAG 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 291, 774
Bst4CI ACNGT 2 cut(s) 572, 581
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 1044, 1147
BstDEI CTNAG 5 cut(s) 115, 164, 182, 270, 819
BstDSI CCRYGG 2 cut(s) 100, 529
BstF5I GGATG 2 cut(s) 886, 1067
BstFNI CGCG 2 cut(s) 201, 1109
BstKTI GATC 7 cut(s) 424, 538, 787, 834, 874, 949, 1009
BstMAI GTCTC 2 cut(s) 140, 178
BstMBI GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
BstMWI GCNNNNNNNGC 7 cut(s) 105, 111, 221, 255, 275, 1137, 1146
BstNI CCWGG 2 cut(s) 291, 774
BstSCI CCNGG 3 cut(s) 54, 289, 772
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 2 cut(s) 201, 1109
BstV1I GCAGC 6 cut(s) 5, 92, 143, 211, 580, 988
BstV2I GAAGAC 3 cut(s) 461, 575, 1056
BstXI CCANNNNNNTGG 1 cut(s) 146
BsuRI GGCC 2 cut(s) 99, 936
BtgI CCRYGG 2 cut(s) 100, 529
BtgZI GCGATG 1 cut(s) 1090
BtsCI GGATG 2 cut(s) 886, 1067
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 1 cut(s) 506
BtuMI TCGCGA 1 cut(s) 1109
Cac8I GCNNGC 2 cut(s) 1044, 1147
CciI TCATGA 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 51, 935
CseI GACGC 1 cut(s) 1050
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 1 cut(s) 408
CviAII CATG 8 cut(s) 15, 101, 356, 530, 788, 927, 950, 1141
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 5 cut(s) 115, 164, 182, 270, 819
DpnI GATC 7 cut(s) 423, 537, 786, 833, 873, 948, 1008
DpnII GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 100, 529
Eco24I GRGCYC 2 cut(s) 116, 271
Eco31I GGTCTC 2 cut(s) 140, 178
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 289, 772
EcoT14I CCWWGG 2 cut(s) 100, 529
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 2 cut(s) 100, 529
FaeI CATG 8 cut(s) 18, 104, 359, 533, 791, 930, 953, 1144
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 18, 37
FatI CATG 8 cut(s) 14, 100, 355, 529, 787, 926, 949, 1140
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 4 cut(s) 421, 535, 784, 946
Fnu4HI GCNGC 6 cut(s) 19, 106, 157, 225, 594, 977
FokI GGATG 2 cut(s) 873, 1054
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 6 cut(s) 19, 106, 157, 225, 594, 977
FspBI CTAG 2 cut(s) 405, 1150
GluI GCNGC 6 cut(s) 19, 106, 157, 225, 594, 977
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 99, 936
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 1050
Hin1II CATG 8 cut(s) 18, 104, 359, 533, 791, 930, 953, 1144
HindIII AAGCTT 2 cut(s) 344, 1129
HinfI GANTC 4 cut(s) 635, 674, 793, 905
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 372, 545, 956
Hpy188I TCNGA 3 cut(s) 183, 273, 421
Hpy188III TCNNGA 3 cut(s) 425, 788, 1108
Hpy99I CGWCG 2 cut(s) 628, 1016
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 2 cut(s) 572, 581
HpyCH4V TGCA 6 cut(s) 21, 159, 227, 855, 914, 976
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 111, 221, 255, 275, 1137, 1146
HpyF3I CTNAG 5 cut(s) 115, 164, 182, 270, 819
Hsp92II CATG 8 cut(s) 18, 104, 359, 533, 791, 930, 953, 1144
Ksp22I TGATCA 4 cut(s) 421, 535, 784, 946
Kzo9I GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 6 cut(s) 5, 92, 143, 211, 580, 988
LweI GCATC 1 cut(s) 773
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 2 cut(s) 405, 1150
MaeIII GTNAC 1 cut(s) 606
MalI GATC 7 cut(s) 423, 537, 786, 833, 873, 948, 1008
MboI GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
MfeI CAATTG 1 cut(s) 992
MhlI GDGCHC 2 cut(s) 116, 271
MluCI AATT 8 cut(s) 91, 175, 460, 565, 847, 917, 992, 1097
MlyI GAGTC 2 cut(s) 629, 899
MmeI TCCRAC 1 cut(s) 600
MnlI CCTC 5 cut(s) 33, 388, 649, 828, 900
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 399
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 291, 774
MunI CAATTG 1 cut(s) 992
MvaI CCWGG 2 cut(s) 291, 774
MvnI CGCG 2 cut(s) 201, 1109
MwoI GCNNNNNNNGC 7 cut(s) 105, 111, 221, 255, 275, 1137, 1146
NciI CCSGG 1 cut(s) 56
NcoI CCATGG 2 cut(s) 100, 529
NdeI CATATG 1 cut(s) 631
NdeII GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
NlaIII CATG 8 cut(s) 18, 104, 359, 533, 791, 930, 953, 1144
NlaIV GGNNCC 2 cut(s) 53, 753
NruI TCGCGA 1 cut(s) 1109
PaeR7I CTCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 787
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 674, 793
PkrI GCNGC 6 cut(s) 20, 107, 158, 226, 595, 978
PleI GAGTC 2 cut(s) 629, 899
PpsI GAGTC 2 cut(s) 629, 899
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 289, 772
PspGI CCWGG 2 cut(s) 289, 772
PspN4I GGNNCC 2 cut(s) 53, 753
PspPI GGNCC 2 cut(s) 51, 935
PspXI VCTCGAGB 1 cut(s) 328
PsrI GAACNNNNNNTAC 2 cut(s) 400, 432
PstI CTGCAG 1 cut(s) 161
RruI TCGCGA 1 cut(s) 1109
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 19, 106, 157, 225, 594, 977
Sau3AI GATC 7 cut(s) 421, 535, 784, 831, 871, 946, 1006
Sau96I GGNCC 2 cut(s) 51, 935
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 2 cut(s) 629, 899
ScrFI CCNGG 3 cut(s) 56, 291, 774
SduI GDGCHC 2 cut(s) 116, 271
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 1 cut(s) 773
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 328
SinI GGWCC 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 8 cut(s) 91, 175, 460, 565, 847, 917, 992, 1097
SsiI CCGC 2 cut(s) 201, 1082
SspI AATATT 1 cut(s) 1032
SspMI CTAG 2 cut(s) 405, 1150
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 54, 289, 772
StyI CCWWGG 2 cut(s) 100, 529
TaaI ACNGT 2 cut(s) 572, 581
TaqI TCGA 2 cut(s) 329, 969
TasI AATT 8 cut(s) 91, 175, 460, 565, 847, 917, 992, 1097
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 2 cut(s) 674, 793
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 513
TseI GCWGC 6 cut(s) 18, 105, 156, 224, 593, 976
TspDTI ATGAA 5 cut(s) 321, 372, 575, 1056, 1093
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 2 cut(s) 405, 1150
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.