Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Reverse (-)

10142969 .. 10144183

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGCCAGGCCTTCAGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAATTATCTGAGACCTGACTTAAAACGTGGGAGCTTCTCTCCCCAAGAAGCTGCACTCATTATTGAACTCCATAGCATTCTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTGCCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAAAAGAAGCTCATCTCGCATGAAGTGATTCCTGCATTTGCCTCCTTTTCTGATGATCATATTCACAACCCTAGTGGTCATGGCTCTGAGGAAGGTTTCTTCACTCTCAATACAAACCCTAATTTGTGTTCTCAACCACAAGATCAGCTATACCTCCCCATTGTTCCATCACCAGTGCCATCACTAGGTCTCAATTATCATGGTGATTTTAATAACATTCTCAAGTTAGACCAGACCAATTACGCTTCCAATTTCGTCGATCATTTTTTGCCTCCCTTCCAATTACCATCAAATAATGCATCCTCATATGAGTCCTCATCATGGTCCTCAGGCTATCAACCCCAACACCAATATGATCCAAATATTCAGCAAGTTCAAAATTTCAGCATCAATGAAGCTGCAGCTGCTCAATATAATAATATTGGTAATGAGCTCATGGTTCCAATTAGTATGGCATCGTCAGAACCAGTCGCTTATGAAAACCCTTTCATTTTACCCACCGTGCCTAAATTTTGTGAGATCATTGATGGTAATATTTGTAGAATGCCAATATTATACCCATCTGATGTACAAGAACTTGATTCACTTGCCAAATTATCATGCTTTACATCTGGTCATGGATCTCACCCTCAAGATCTTCAATTTCCATCCAATCAATTAGAGTGCATTGATGCCATCATGTCATTGGTGCCATCGTCTTCATCATCGTCATCACCTTCATCGGCATCTCCATCCTTGTTACCATTATCAAGCAGCCAATTCGACGCAAACTTTAACGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

36.78

Weight (kDa)

5.57

Isoelectric Point (pI)

69.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	37
AclWI	GGATC	2 cut(s)	563, 841
AcsI	RAATTY	2 cut(s)	592, 722
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	2 cut(s)	398, 534
AgsI	TTSAA	3 cut(s)	116, 590, 854
AjnI	CCWGG	2 cut(s)	7, 166
AluBI	AGCT	7 cut(s)	84, 101, 223, 361, 611, 617, 646
AluI	AGCT	7 cut(s)	84, 101, 223, 361, 611, 617, 646
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	55, 407
AlwI	GGATC	2 cut(s)	563, 841
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	5, 10
ApeKI	GCWGC	5 cut(s)	101, 611, 614, 617, 966
ApoI	RAATTY	2 cut(s)	592, 722
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	4 cut(s)	375, 428, 830, 918
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	537
AxyI	CCTNAGG	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	2 cut(s)	148, 648
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	88, 598, 604, 626, 978
BcgI	CGANNNNNNTGC	2 cut(s)	955, 989
BciT130I	CCWGG	2 cut(s)	9, 168
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	55, 407
BfaI	CTAG	3 cut(s)	131, 285, 398
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	171
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	5 cut(s)	102, 612, 615, 618, 967
BlsI	GCNGC	5 cut(s)	103, 613, 616, 619, 968
Bme1390I	CCNGG	2 cut(s)	9, 168
Bme18I	GGWCC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	2 cut(s)	654, 903
BmrFI	CCNGG	2 cut(s)	9, 168
BmsI	GCATC	5 cut(s)	521, 609, 677, 874, 947
BpiI	GAAGAC	1 cut(s)	903
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpuEI	CTTGAG	2 cut(s)	419, 828
BsaI	GGTCTC	2 cut(s)	55, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 534
Bse1I	ACTGG	2 cut(s)	386, 680
Bse21I	CCTNAGG	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	9, 168
BseGI	GGATG	3 cut(s)	512, 860, 944
BseLI	CCNNNNNNNGG	2 cut(s)	398, 534
BseMII	CTCAG	5 cut(s)	32, 50, 161, 291, 555
BseNI	ACTGG	2 cut(s)	386, 680
BseXI	GCAGC	5 cut(s)	88, 598, 604, 626, 978
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	7, 12
BshNI	GGYRCC	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	398, 534
BsmAI	GTCTC	2 cut(s)	55, 407
BsmI	GAATGC	2 cut(s)	126, 762
BsnI	GGCC	2 cut(s)	7, 12
Bso31I	GGTCTC	2 cut(s)	55, 407
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	148, 648
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
BspANI	GGCC	2 cut(s)	7, 12
BspCNI	CTCAG	5 cut(s)	33, 51, 160, 292, 554
BspLI	GGNNCC	2 cut(s)	654, 903
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	563, 841
BspT107I	GGYRCC	1 cut(s)	901
BspTNI	GGTCTC	2 cut(s)	55, 407
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	386, 680
BssMI	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
Bst2UI	CCWGG	2 cut(s)	9, 168
Bst4CI	ACNGT	1 cut(s)	715
BstAUI	TGTACA	1 cut(s)	781
BstDEI	CTNAG	5 cut(s)	41, 59, 147, 300, 541
BstF5I	GGATG	3 cut(s)	512, 860, 944
BstKTI	GATC	7 cut(s)	271, 358, 475, 571, 735, 836, 850
BstMAI	GTCTC	2 cut(s)	55, 407
BstMBI	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 152, 229, 617
BstNI	CCWGG	2 cut(s)	9, 168
BstSCI	CCNGG	2 cut(s)	7, 166
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	5 cut(s)	88, 598, 604, 626, 978
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	2 cut(s)	833, 847
BstYI	RGATCY	2 cut(s)	833, 847
Bsu36I	CCTNAGG	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	7, 12
BtsCI	GGATG	3 cut(s)	512, 860, 944
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	537
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	1 cut(s)	782
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	8 cut(s)	233, 293, 413, 534, 649, 813, 830, 892
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	5 cut(s)	41, 59, 147, 300, 541
DpnI	GATC	7 cut(s)	270, 357, 474, 570, 734, 835, 849
DpnII	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
Ecl136II	GAGCTC	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	148, 648
Eco31I	GGTCTC	2 cut(s)	55, 407
Eco47I	GGWCC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	646
Eco81I	CCTNAGG	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	7, 166
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	2 cut(s)	148, 648
FaeI	CATG	8 cut(s)	236, 296, 416, 537, 652, 816, 833, 895
FatI	CATG	8 cut(s)	232, 292, 412, 533, 648, 812, 829, 891
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	5 cut(s)	102, 612, 615, 618, 967
FokI	GGATG	3 cut(s)	499, 847, 931
FriOI	GRGCYC	2 cut(s)	148, 648
Fsp4HI	GCNGC	5 cut(s)	102, 612, 615, 618, 967
FspBI	CTAG	3 cut(s)	131, 285, 398
GluI	GCNGC	5 cut(s)	102, 612, 615, 618, 967
HaeIII	GGCC	2 cut(s)	7, 12
HgaI	GACGC	1 cut(s)	986
Hin1II	CATG	8 cut(s)	236, 296, 416, 537, 652, 816, 833, 895
HinfI	GANTC	3 cut(s)	241, 524, 794
HphI	GGTGA	4 cut(s)	375, 428, 830, 918
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	7 cut(s)	18, 60, 150, 265, 301, 676, 778
Hpy188III	TCNNGA	1 cut(s)	845
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	2 cut(s)	473, 980
HpyAV	CCTTC	4 cut(s)	23, 299, 499, 939
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	104, 248, 512, 614, 879
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 152, 229, 617
HpyF3I	CTNAG	5 cut(s)	41, 59, 147, 300, 541
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	8 cut(s)	236, 296, 416, 537, 652, 816, 833, 895
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	5 cut(s)	88, 598, 604, 626, 978
LweI	GCATC	5 cut(s)	521, 609, 677, 874, 947
MaeI	CTAG	3 cut(s)	131, 285, 398
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	951
MalI	GATC	7 cut(s)	270, 357, 474, 570, 734, 835, 849
MboI	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
MboII	GAAGA	5 cut(s)	183, 202, 304, 842, 903
MflI	RGATCY	2 cut(s)	833, 847
MhlI	GDGCHC	2 cut(s)	148, 648
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	8 cut(s)	265, 295, 377, 495, 526, 538, 550, 852
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	71, 423, 987
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	617
MspR9I	CCNGG	2 cut(s)	9, 168
Mva1269I	GAATGC	2 cut(s)	126, 762
MvaI	CCWGG	2 cut(s)	9, 168
MwoI	GCNNNNNNNGC	4 cut(s)	132, 152, 229, 617
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
NlaIII	CATG	8 cut(s)	236, 296, 416, 537, 652, 816, 833, 895
NlaIV	GGNNCC	2 cut(s)	654, 903
NsiI	ATGCAT	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	12
PctI	GAATGC	2 cut(s)	126, 762
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	241, 794
PkrI	GCNGC	5 cut(s)	103, 613, 616, 619, 968
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	7, 166
PspGI	CCWGG	2 cut(s)	7, 166
PspN4I	GGNNCC	2 cut(s)	654, 903
PspPI	GGNCC	1 cut(s)	537
PspXI	VCTCGAGB	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	833, 847
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	71, 423, 987
SatI	GCNGC	5 cut(s)	102, 612, 615, 618, 967
Sau3AI	GATC	7 cut(s)	268, 355, 472, 568, 732, 833, 847
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	9, 168
SduI	GDGCHC	2 cut(s)	148, 648
SfaNI	GCATC	5 cut(s)	521, 609, 677, 874, 947
SfcI	CTRYAG	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	537
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	205, 434, 843
SmoI	CTYRAG	3 cut(s)	205, 434, 843
SseBI	AGGCCT	1 cut(s)	12
SspI	AATATT	4 cut(s)	577, 634, 748, 765
SspMI	CTAG	3 cut(s)	131, 285, 398
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	7, 166
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	206, 471, 975
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	2 cut(s)	241, 794
Tru1I	TTAA	3 cut(s)	71, 423, 987
Tru9I	TTAA	3 cut(s)	71, 423, 987
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	5 cut(s)	101, 611, 614, 617, 966
TspDTI	ATGAA	7 cut(s)	198, 249, 621, 691, 705, 903, 921
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	592, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XhoI	CTCGAG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	3 cut(s)	131, 285, 398
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.