Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032473.1

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 425

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggttccgagtgtggcatctctaccaggttatgatcatgagaatctatcagctgtacccacaatgcctcagtcttgtgagatcaatattgatggcagtgcttgcagagcaatgccatttgatccacctgacaatcatcctccacaagaacttgactcacttgcaaaagtttcatcgtgtttcggtccatttggtgatcatggctcttataatcctttcgatctgcagcttccctccaatcaggtggaattagttgatcccgtcatatcatcgttgccaatgttatcacagccgtccccgtcatccgcgtcttcatccttgttaccactaccaagtagccaattattcatcacgaaccgtaatgttctttcaagcttgggaagcctggctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

131

Amino Acids

13.79

Weight (kDa)

4.2

Isoelectric Point (pI)

83.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AccII	CGCG	1 cut(s)	308
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	116, 251
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	372
AjnI	CCWGG	2 cut(s)	25, 384
AluBI	AGCT	4 cut(s)	53, 229, 375, 393
AluI	AGCT	4 cut(s)	53, 229, 375, 393
AlwI	GGATC	2 cut(s)	116, 251
ApeKI	GCWGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	27, 386
BclI	TGATCA	2 cut(s)	34, 196
BfaI	CTAG	2 cut(s)	390, 394
BfmI	CTRYAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	27, 386
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	27, 386
BmsI	GCATC	1 cut(s)	26
BmtI	GCTAGC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	27, 386
BseGI	GGATG	3 cut(s)	136, 302, 314
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
Bsp143I	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	116, 251
BsrDI	GCAATG	1 cut(s)	117
BssMI	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
Bst2UI	CCWGG	2 cut(s)	27, 386
Bst4CI	ACNGT	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	103, 391
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	136, 302, 314
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	6 cut(s)	37, 84, 124, 199, 223, 259
BstMBI	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 107, 381, 390
BstNI	CCWGG	2 cut(s)	27, 386
BstSCI	CCNGG	2 cut(s)	25, 384
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	136, 302, 314
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	103, 391
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	38, 200
CviJI	RGCY	9 cut(s)	53, 204, 229, 292, 339, 375, 384, 389, 393
CviKI_1	RGCY	9 cut(s)	53, 204, 229, 292, 339, 375, 384, 389, 393
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	6 cut(s)	36, 83, 123, 198, 222, 258
DpnII	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	25, 384
FaeI	CATG	2 cut(s)	41, 203
FaiI	YATR	5 cut(s)	33, 39, 201, 210, 266
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	37, 199
FbaI	TGATCA	2 cut(s)	34, 196
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	3 cut(s)	123, 289, 301
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	390, 394
GluI	GCNGC	1 cut(s)	227
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	41, 203
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	43, 155
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	38, 352
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	3 cut(s)	105, 164, 226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 107, 381, 390
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	41, 203
Ksp22I	TGATCA	2 cut(s)	34, 196
Kzo9I	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
LpnPI	CCDG	5 cut(s)	12, 39, 141, 227, 371
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	26
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	2 cut(s)	390, 394
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	6 cut(s)	36, 83, 123, 198, 222, 258
MboI	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
MboII	GAAGA	1 cut(s)	303
MluCI	AATT	2 cut(s)	248, 341
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	78, 150, 244
MspA1I	CMGCKG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	27, 386
MvaI	CCWGG	2 cut(s)	27, 386
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	102, 107, 381, 390
NdeII	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	41, 203
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	25, 384
PspGI	CCWGG	2 cut(s)	25, 384
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	6 cut(s)	34, 81, 121, 196, 220, 256
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	27, 386
SetI	ASST	7 cut(s)	31, 55, 130, 231, 246, 377, 395
SexAI	ACCWGGT	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	248, 341
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	390, 394
StyD4I	CCNGG	2 cut(s)	25, 384
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	248, 341
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	162, 303, 337
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	185
XspI	CTAG	2 cut(s)	390, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.