Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Reverse (-)

60641773 .. 60643818

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGACATCACTCATGCTGCAACAAACAGAAAGTGAAGAGAGGGCTATGGTCCCCAGAAGAAGATGAAAAGCTCATAAACTACATTACGAATTACGGCCATGGCTGCTGGAGCTCAGTTCCTAAACTTGCAGGTCTCCAAAGATGTGGAAAGAGCTGCAGACTGAGATGGATAAATTATCTGAGACCCGACTTGAAACGTGGGAGCTTCTCTTCCCAAGAAGCTGCACTCATCATTCAACTCCATAGCATTTTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAGAAGAAGCTTATCCCCCATGAAGTCATTCCGGCTTTGGCCTCATTCTCTCATTTTCTTAACCCTAGTAGTGCTGTTTCTGATCAGGAAAGTTTCTTCACTACTCTAATCACAAACCCTAATTTCGGTCTTCAACAAGAACAGCCTTTCCTTCCCGTTCCAACACCATTGCCACCATCTAGTTTCTACCATGGTGATCATAGTATTTTCAAGTTAGACTACACCAATTATAGTTCCAACCGCCTTCATTTTCCAACCCCCATCCAATTACCATCAAACTATTCATCGTCATATGATTCGTCATGGTCATTAGGTTATCAACCCCATCTATTTGATTCGAATCATCAACAAGATCAAATTCTCAACAATATTGAAGTTGCTCCACATTTTAACATTGGAAATGACCTTATGGTTCTGAGTGTGGCATCTCTACCAGGTTATGATCATGAGAATCGATCAGTTGTACCCACAATGCCTCAGTCTTGTGAGATCAATATTGATGGCAGTGCTTGCAGAGCAATGCCATTGGATCCACCTGATAATCATCCTCCACAAGAACTTGACTCACTTGCAAAAGTTTCATCGTGTTTCGGTCCATTTGGTGATCATGGCTCTTATAATCCTTTCGATCTGCAGCTTCCCTCCAATCAGCTGGAATTAGTTGATCCCGTCATATCATCGTTGCCAATGTTATCACAGCCGTCCCCGTCATCCGCGTCTTCATCCTTGTTACCACTACCAAGTAGCCAATTATTCATCACGAACCCTAATGTTCTTTCAAGCTTGGGAAGCCTGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

6.22

Isoelectric Point (pI)

67.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	1.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	4.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	122
AccII	CGCG	1 cut(s)	1052
AciI	CCGC	2 cut(s)	577, 1050
AclWI	GGATC	3 cut(s)	860, 873, 995
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	6 cut(s)	196, 239, 470, 547, 710, 1116
AjnI	CCWGG	3 cut(s)	289, 769, 1128
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	140, 178
AlwI	GGATC	3 cut(s)	860, 873, 995
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	97, 375
ApeKI	GCWGC	5 cut(s)	18, 105, 156, 224, 970
ApoI	RAATTY	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	51, 929
AsuHPI	GGTGA	2 cut(s)	542, 950
AsuII	TTCGAA	1 cut(s)	674
AsuNHI	GCTAGC	1 cut(s)	1133
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	51, 929
BamHI	GGATCC	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	116, 271
BbsI	GAAGAC	2 cut(s)	458, 1047
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	5 cut(s)	5, 92, 143, 211, 982
BccI	CCATC	7 cut(s)	162, 258, 520, 605, 616, 669, 830
BceAI	ACGGC	2 cut(s)	112, 1021
BciT130I	CCWGG	3 cut(s)	291, 771, 1130
BclI	TGATCA	4 cut(s)	418, 532, 778, 940
BcoDI	GTCTC	2 cut(s)	140, 178
BfaI	CTAG	4 cut(s)	402, 516, 1134, 1138
BfmI	CTRYAG	2 cut(s)	157, 968
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	5 cut(s)	19, 106, 157, 225, 971
BlsI	GCNGC	5 cut(s)	20, 107, 158, 226, 972
Bme1390I	CCNGG	3 cut(s)	291, 771, 1130
Bme18I	GGWCC	2 cut(s)	51, 929
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	51, 929
BmiI	GGNNCC	2 cut(s)	53, 867
BmrFI	CCNGG	3 cut(s)	291, 771, 1130
BmsI	GCATC	1 cut(s)	770
BmtI	GCTAGC	1 cut(s)	1137
BpiI	GAAGAC	2 cut(s)	458, 1047
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	790
BsaBI	GATNNNNATC	2 cut(s)	675, 879
BsaI	GGTCTC	2 cut(s)	140, 178
BsaJI	CCNNGG	2 cut(s)	100, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse3DI	GCAATG	2 cut(s)	503, 861
Bse8I	GATNNNNATC	2 cut(s)	675, 879
BseBI	CCWGG	3 cut(s)	291, 771, 1130
BseCI	ATCGAT	1 cut(s)	790
BseDI	CCNNGG	2 cut(s)	100, 526
BseGI	GGATG	4 cut(s)	597, 880, 1046, 1058
BseJI	GATNNNNATC	2 cut(s)	675, 879
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	2 cut(s)	503, 861
BseMII	CTCAG	6 cut(s)	129, 155, 173, 284, 743, 827
BseXI	GCAGC	5 cut(s)	5, 92, 143, 211, 982
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	1052
BshFI	GGCC	2 cut(s)	99, 377
BshVI	ATCGAT	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	3 cut(s)	18, 37, 1024
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	140, 178
BsmFI	GGGAC	3 cut(s)	18, 37, 1024
BsnI	GGCC	2 cut(s)	99, 377
Bso31I	GGTCTC	2 cut(s)	140, 178
BsoBI	CYCGRG	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	2 cut(s)	116, 271
Bsp19I	CCATGG	2 cut(s)	100, 526
BspACI	CCGC	2 cut(s)	577, 1050
BspANI	GGCC	2 cut(s)	99, 377
BspCNI	CTCAG	6 cut(s)	128, 156, 174, 283, 744, 826
BspDI	ATCGAT	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	1052
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	53, 867
BspMAI	CTGCAG	2 cut(s)	161, 972
BspMI	ACCTGC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	1137
BspPI	GGATC	3 cut(s)	860, 873, 995
BspT104I	TTCGAA	1 cut(s)	674
BspTNI	GGTCTC	2 cut(s)	140, 178
BsrDI	GCAATG	2 cut(s)	503, 861
BssECI	CCNNGG	2 cut(s)	100, 526
BssT1I	CCWWGG	2 cut(s)	100, 526
Bst2UI	CCWGG	3 cut(s)	291, 771, 1130
Bst6I	CTCTTC	2 cut(s)	32, 217
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	847, 1135
BstDEI	CTNAG	6 cut(s)	115, 164, 182, 270, 752, 813
BstDSI	CCRYGG	2 cut(s)	100, 526
BstF5I	GGATG	4 cut(s)	597, 880, 1046, 1058
BstFNI	CGCG	1 cut(s)	1052
BstMAI	GTCTC	2 cut(s)	140, 178
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 111, 255, 275, 846, 851, 1125, 1134
BstNI	CCWGG	3 cut(s)	291, 771, 1130
BstSCI	CCNGG	3 cut(s)	289, 769, 1128
BstSFI	CTRYAG	2 cut(s)	157, 968
BstUI	CGCG	1 cut(s)	1052
BstV1I	GCAGC	5 cut(s)	5, 92, 143, 211, 982
BstV2I	GAAGAC	2 cut(s)	458, 1047
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	2 cut(s)	146, 988
BstYI	RGATCY	1 cut(s)	865
Bsu15I	ATCGAT	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	99, 377
BsuTUI	ATCGAT	1 cut(s)	790
BtgI	CCRYGG	2 cut(s)	100, 526
BtsCI	GGATG	4 cut(s)	597, 880, 1046, 1058
BtsI	GCAGTG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	847
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	847, 1135
CciI	TCATGA	1 cut(s)	781
Cfr13I	GGNCC	2 cut(s)	51, 929
ClaI	ATCGAT	1 cut(s)	790
CseI	GACGC	1 cut(s)	1041
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	7 cut(s)	15, 101, 356, 527, 639, 782, 944
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	6 cut(s)	115, 164, 182, 270, 752, 813
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	32, 217
EarI	CTCTTC	2 cut(s)	32, 217
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	100, 526
Eco24I	GRGCYC	2 cut(s)	116, 271
Eco31I	GGTCTC	2 cut(s)	140, 178
Eco47I	GGWCC	2 cut(s)	51, 929
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	289, 769, 1128
EcoT14I	CCWWGG	2 cut(s)	100, 526
EcoT38I	GRGCYC	2 cut(s)	116, 271
ErhI	CCWWGG	2 cut(s)	100, 526
FaeI	CATG	7 cut(s)	18, 104, 359, 530, 642, 785, 947
FaqI	GGGAC	3 cut(s)	18, 37, 1024
FatI	CATG	7 cut(s)	14, 100, 355, 526, 638, 781, 943
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	4 cut(s)	418, 532, 778, 940
Fnu4HI	GCNGC	5 cut(s)	19, 106, 157, 225, 971
FokI	GGATG	4 cut(s)	584, 867, 1033, 1045
FriOI	GRGCYC	2 cut(s)	116, 271
Fsp4HI	GCNGC	5 cut(s)	19, 106, 157, 225, 971
FspBI	CTAG	4 cut(s)	402, 516, 1134, 1138
GluI	GCNGC	5 cut(s)	19, 106, 157, 225, 971
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	99, 377
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	1041
Hin1II	CATG	7 cut(s)	18, 104, 359, 530, 642, 785, 947
HindIII	AAGCTT	2 cut(s)	344, 1117
HinfI	GANTC	5 cut(s)	632, 671, 676, 787, 899
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	542, 950
Hpy188I	TCNGA	4 cut(s)	183, 273, 418, 753
Hpy188III	TCNNGA	3 cut(s)	422, 782, 1096
HpyAV	CCTTC	2 cut(s)	497, 590
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	21, 131, 159, 227, 849, 908, 970
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 111, 255, 275, 846, 851, 1125, 1134
HpyF3I	CTNAG	6 cut(s)	115, 164, 182, 270, 752, 813
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	7 cut(s)	18, 104, 359, 530, 642, 785, 947
Ksp22I	TGATCA	4 cut(s)	418, 532, 778, 940
LmnI	GCTCC	3 cut(s)	111, 204, 721
Lsp1109I	GCAGC	5 cut(s)	5, 92, 143, 211, 982
LweI	GCATC	1 cut(s)	770
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	4 cut(s)	402, 516, 1134, 1138
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	1065
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	2 cut(s)	116, 271
MluCI	AATT	8 cut(s)	91, 175, 457, 562, 602, 693, 992, 1085
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	3 cut(s)	521, 597, 614
MnlI	CCTC	5 cut(s)	35, 388, 822, 894, 988
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	396, 726
MspA1I	CMGCKG	1 cut(s)	988
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	3 cut(s)	291, 771, 1130
MvaI	CCWGG	3 cut(s)	291, 771, 1130
MvnI	CGCG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	8 cut(s)	105, 111, 255, 275, 846, 851, 1125, 1134
NcoI	CCATGG	2 cut(s)	100, 526
NdeI	CATATG	1 cut(s)	628
NheI	GCTAGC	1 cut(s)	1133
NlaIII	CATG	7 cut(s)	18, 104, 359, 530, 642, 785, 947
NlaIV	GGNNCC	2 cut(s)	53, 867
NspV	TTCGAA	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	328
PagI	TCATGA	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	632, 671, 676, 787
PkrI	GCNGC	5 cut(s)	20, 107, 158, 226, 972
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PsiI	TTATAA	1 cut(s)	954
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	3 cut(s)	289, 769, 1128
PspGI	CCWGG	3 cut(s)	289, 769, 1128
PspN4I	GGNNCC	2 cut(s)	53, 867
PspPI	GGNCC	2 cut(s)	51, 929
PspXI	VCTCGAGB	1 cut(s)	328
PstI	CTGCAG	2 cut(s)	161, 972
PsuI	RGATCY	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	396, 726
SatI	GCNGC	5 cut(s)	19, 106, 157, 225, 971
Sau96I	GGNCC	2 cut(s)	51, 929
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	3 cut(s)	291, 771, 1130
SduI	GDGCHC	2 cut(s)	116, 271
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	1 cut(s)	770
SfcI	CTRYAG	2 cut(s)	157, 968
Sfr274I	CTCGAG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	2 cut(s)	51, 929
SlaI	CTCGAG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	8 cut(s)	91, 175, 457, 562, 602, 693, 992, 1085
SsiI	CCGC	2 cut(s)	577, 1050
SspI	AATATT	2 cut(s)	706, 832
SspMI	CTAG	4 cut(s)	402, 516, 1134, 1138
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	289, 769, 1128
StyI	CCWWGG	2 cut(s)	100, 526
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	329, 674, 790, 963
TaqII	GACCGA	2 cut(s)	452, 917
TasI	AATT	8 cut(s)	91, 175, 457, 562, 602, 693, 992, 1085
TfiI	GAWTC	4 cut(s)	632, 671, 676, 787
Tru1I	TTAA	2 cut(s)	396, 726
Tru9I	TTAA	2 cut(s)	396, 726
TscAI	CASTG	1 cut(s)	847
TseI	GCWGC	5 cut(s)	18, 105, 156, 224, 970
TspDTI	ATGAA	8 cut(s)	81, 321, 372, 572, 609, 906, 1047, 1081
TspRI	CASTG	1 cut(s)	847
VpaK11BI	GGWCC	2 cut(s)	51, 929
XapI	RAATTY	1 cut(s)	693
XhoI	CTCGAG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	4 cut(s)	402, 516, 1134, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.