Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004340.1

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

31578 .. 33149

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004340.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggctgctggagctcagttcctaaacttgcagcgttctggaggcggcggcggcgctggtcttgccagactgggccacgggcatcccaaaccgcttcaccatggagatcgaggtcgaaggttctgggcagcgacctcacccaaactagtagccaacgagtccacaagcaagaagaaggtcaagatcgacccctggcctccgtccggcaagccgtcggctcctgaaagctgtagaagcattgatgtccgcacttttggggcagtatgggctcagatagccaagcacctaccaggaagaacagataatgaagtgaagaacttttggaactcgagcataaagaagaagctcatcccccatgatgtcattccagcattggcctcattctctcattttcttaaccctagtaatgctggttctgatcaggaaagtttcttcactactctaattacaaaccctaatttcggtcttcaacaagaacagccttaccttccctttccaacaccattgccaccatctagtttctaccatggtgatcacagtattttaaagttagactacaccaattatagttccaaccgccttcattttccaacccccatccaattaccatcaaactattcatcgtcatatgattcgtcatggtcattaggttatcaaccccatctatttgattcgaatcatcaacaagatcaaattctcaacaatattgaagttgctccacattttaatattggaaatgagcttatggttccgagtgtggcatctctaccaggttatgatcatgagaatctatcagctgtacccacaatgcctcagtcttgtgagatcaatattgatggcagtgcttgcagagcaatgccatttgatccacctgacaatcatcctccacaagaacttgactcacttgcaaaagtttcatcgtgtttcggtccatttggtgatcatggctcttataatcctttcgatctgcagcttccctccaatcaggtggaattagttgatcccgtcatatcatcgttgccaacattggcacagccgtccccgtcatccgcatcttcatccttgttaccactaccaagtagccaattattcatcacgaaccgtaatgttctttcaagcttgggaagcctggctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

379

Amino Acids

41.16

Weight (kDa)

6.33

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AciI	CCGC	7 cut(s)	45, 48, 51, 92, 247, 577, 1050
AclWI	GGATC	2 cut(s)	860, 995
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	203, 461
AgsI	TTSAA	3 cut(s)	470, 710, 1116
AhlI	ACTAGT	1 cut(s)	145
AjnI	CCWGG	4 cut(s)	191, 289, 769, 1128
AluBI	AGCT	8 cut(s)	14, 228, 346, 742, 797, 973, 1119, 1137
AluI	AGCT	8 cut(s)	14, 228, 346, 742, 797, 973, 1119, 1137
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	2 cut(s)	860, 995
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	3 cut(s)	73, 194, 375
ApeKI	GCWGC	4 cut(s)	5, 31, 128, 970
ApoI	RAATTY	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	73, 929
AsuHPI	GGTGA	4 cut(s)	89, 129, 542, 950
AsuII	TTCGAA	1 cut(s)	674
AsuNHI	GCTAGC	1 cut(s)	1133
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	929
BanII	GRGCYC	2 cut(s)	16, 271
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	43, 140, 982
BccI	CCATC	5 cut(s)	520, 605, 616, 669, 830
BceAI	ACGGC	2 cut(s)	196, 1021
BciT130I	CCWGG	4 cut(s)	193, 291, 771, 1130
BclI	TGATCA	4 cut(s)	418, 532, 778, 940
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	5 cut(s)	146, 402, 516, 1134, 1138
BfmI	CTRYAG	2 cut(s)	229, 968
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	7 cut(s)	6, 32, 46, 49, 52, 129, 971
BlsI	GCNGC	7 cut(s)	7, 33, 47, 50, 53, 130, 972
Bme1390I	CCNGG	4 cut(s)	193, 291, 771, 1130
Bme18I	GGWCC	1 cut(s)	929
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	73, 929
BmiI	GGNNCC	2 cut(s)	219, 750
BmrFI	CCNGG	4 cut(s)	193, 291, 771, 1130
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	91, 770, 1061
BmtI	GCTAGC	1 cut(s)	1137
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	2 cut(s)	30, 60
Bpu14I	TTCGAA	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	4 cut(s)	76, 100, 191, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 461
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	2 cut(s)	503, 861
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	4 cut(s)	193, 291, 771, 1130
BseDI	CCNNGG	4 cut(s)	76, 100, 191, 526
BseGI	GGATG	6 cut(s)	82, 348, 597, 880, 1046, 1058
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	203, 461
BseMI	GCAATG	2 cut(s)	503, 861
BseMII	CTCAG	3 cut(s)	29, 284, 827
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	43, 140, 982
BshFI	GGCC	3 cut(s)	75, 196, 377
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	2 cut(s)	203, 461
BsmFI	GGGAC	1 cut(s)	1024
BsnI	GGCC	3 cut(s)	75, 196, 377
BsoBI	CYCGRG	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	2 cut(s)	16, 271
Bsp19I	CCATGG	2 cut(s)	100, 526
BspACI	CCGC	7 cut(s)	45, 48, 51, 92, 247, 577, 1050
BspANI	GGCC	3 cut(s)	75, 196, 377
BspCNI	CTCAG	3 cut(s)	28, 283, 826
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	219, 750
BspMAI	CTGCAG	1 cut(s)	972
BspOI	GCTAGC	1 cut(s)	1137
BspPI	GGATC	2 cut(s)	860, 995
BspT104I	TTCGAA	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	503, 861
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	4 cut(s)	76, 100, 191, 526
BssT1I	CCWWGG	2 cut(s)	100, 526
Bst2UI	CCWGG	4 cut(s)	193, 291, 771, 1130
Bst4CI	ACNGT	2 cut(s)	539, 1103
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	209, 847, 1135
BstDEI	CTNAG	3 cut(s)	15, 270, 813
BstDSI	CCRYGG	3 cut(s)	76, 100, 526
BstF5I	GGATG	6 cut(s)	82, 348, 597, 880, 1046, 1058
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstNI	CCWGG	4 cut(s)	193, 291, 771, 1130
BstSCI	CCNGG	4 cut(s)	191, 289, 769, 1128
BstSFI	CTRYAG	2 cut(s)	229, 968
BstV1I	GCAGC	3 cut(s)	43, 140, 982
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	988
BsuRI	GGCC	3 cut(s)	75, 196, 377
BtgI	CCRYGG	3 cut(s)	76, 100, 526
BtsCI	GGATG	6 cut(s)	82, 348, 597, 880, 1046, 1058
BtsI	GCAGTG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	847
Cac8I	GCNNGC	3 cut(s)	209, 847, 1135
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	73, 929
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	6 cut(s)	101, 356, 527, 639, 782, 944
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	3 cut(s)	15, 270, 813
DraI	TTTAAA	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	100, 526
Eco24I	GRGCYC	2 cut(s)	16, 271
Eco47I	GGWCC	1 cut(s)	929
Eco53kI	GAGCTC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	4 cut(s)	191, 289, 769, 1128
EcoT14I	CCWWGG	2 cut(s)	100, 526
EcoT38I	GRGCYC	2 cut(s)	16, 271
ErhI	CCWWGG	2 cut(s)	100, 526
FaeI	CATG	6 cut(s)	104, 359, 530, 642, 785, 947
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	6 cut(s)	100, 355, 526, 638, 781, 943
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	4 cut(s)	418, 532, 778, 940
Fnu4HI	GCNGC	7 cut(s)	6, 32, 46, 49, 52, 129, 971
FokI	GGATG	6 cut(s)	69, 335, 584, 867, 1033, 1045
FriOI	GRGCYC	2 cut(s)	16, 271
Fsp4HI	GCNGC	7 cut(s)	6, 32, 46, 49, 52, 129, 971
FspBI	CTAG	5 cut(s)	146, 402, 516, 1134, 1138
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	7 cut(s)	6, 32, 46, 49, 52, 129, 971
GsuI	CTGGAG	2 cut(s)	30, 60
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	75, 196, 377
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	104, 359, 530, 642, 785, 947
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	1117
HinfI	GANTC	6 cut(s)	158, 632, 671, 676, 787, 899
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	4 cut(s)	89, 129, 542, 950
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	273, 418, 753
Hpy188III	TCNNGA	6 cut(s)	39, 181, 221, 422, 782, 1096
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	4 cut(s)	111, 169, 497, 590
HpyCH4III	ACNGT	2 cut(s)	539, 1103
HpyCH4V	TGCA	4 cut(s)	31, 849, 908, 970
HpyF3I	CTNAG	3 cut(s)	15, 270, 813
Hsp92II	CATG	6 cut(s)	104, 359, 530, 642, 785, 947
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	4 cut(s)	418, 532, 778, 940
LmnI	GCTCC	3 cut(s)	11, 223, 721
Lsp1109I	GCAGC	3 cut(s)	43, 140, 982
LweI	GCATC	3 cut(s)	91, 770, 1061
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	5 cut(s)	146, 402, 516, 1134, 1138
MaeIII	GTNAC	1 cut(s)	1065
MboII	GAAGA	7 cut(s)	184, 306, 325, 352, 424, 458, 1047
MhlI	GDGCHC	2 cut(s)	16, 271
MluCI	AATT	7 cut(s)	444, 457, 562, 602, 693, 992, 1085
MlyI	GAGTC	2 cut(s)	167, 893
MmeI	TCCRAC	3 cut(s)	521, 597, 614
MnlI	CCTC	8 cut(s)	35, 104, 145, 207, 388, 822, 894, 988
MseI	TTAA	3 cut(s)	396, 545, 726
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	4 cut(s)	193, 291, 771, 1130
MvaI	CCWGG	4 cut(s)	193, 291, 771, 1130
NcoI	CCATGG	2 cut(s)	100, 526
NdeI	CATATG	1 cut(s)	628
NheI	GCTAGC	1 cut(s)	1133
NlaIII	CATG	6 cut(s)	104, 359, 530, 642, 785, 947
NlaIV	GGNNCC	2 cut(s)	219, 750
NspV	TTCGAA	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	328
PagI	TCATGA	1 cut(s)	781
PfeI	GAWTC	4 cut(s)	632, 671, 676, 787
PkrI	GCNGC	7 cut(s)	7, 33, 47, 50, 53, 130, 972
PleI	GAGTC	2 cut(s)	166, 893
PpsI	GAGTC	2 cut(s)	166, 893
PsiI	TTATAA	1 cut(s)	954
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	4 cut(s)	191, 289, 769, 1128
PspGI	CCWGG	4 cut(s)	191, 289, 769, 1128
PspN4I	GGNNCC	2 cut(s)	219, 750
PspPI	GGNCC	2 cut(s)	73, 929
PspXI	VCTCGAGB	1 cut(s)	328
PsrI	GAACNNNNNNTAC	2 cut(s)	397, 429
PstI	CTGCAG	1 cut(s)	972
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	396, 545, 726
SatI	GCNGC	7 cut(s)	6, 32, 46, 49, 52, 129, 971
Sau96I	GGNCC	2 cut(s)	73, 929
SchI	GAGTC	2 cut(s)	167, 893
ScrFI	CCNGG	4 cut(s)	193, 291, 771, 1130
SduI	GDGCHC	2 cut(s)	16, 271
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	3 cut(s)	91, 770, 1061
SfcI	CTRYAG	2 cut(s)	229, 968
Sfr274I	CTCGAG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	7 cut(s)	444, 457, 562, 602, 693, 992, 1085
SsiI	CCGC	7 cut(s)	45, 48, 51, 92, 247, 577, 1050
SspI	AATATT	3 cut(s)	706, 730, 832
SspMI	CTAG	5 cut(s)	146, 402, 516, 1134, 1138
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	191, 289, 769, 1128
StyI	CCWWGG	2 cut(s)	100, 526
TaaI	ACNGT	2 cut(s)	539, 1103
TaqI	TCGA	6 cut(s)	109, 115, 186, 329, 674, 963
TaqII	GACCGA	2 cut(s)	452, 917
TasI	AATT	7 cut(s)	444, 457, 562, 602, 693, 992, 1085
TauI	GCSGC	3 cut(s)	48, 51, 54
TfiI	GAWTC	4 cut(s)	632, 671, 676, 787
Tru1I	TTAA	3 cut(s)	396, 545, 726
Tru9I	TTAA	3 cut(s)	396, 545, 726
TscAI	CASTG	1 cut(s)	847
TseI	GCWGC	4 cut(s)	5, 31, 128, 970
TspDTI	ATGAA	6 cut(s)	321, 572, 609, 906, 1047, 1081
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	1 cut(s)	693
XhoI	CTCGAG	1 cut(s)	328
XspI	CTAG	5 cut(s)	146, 402, 516, 1134, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.