Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

23458677 .. 23460802

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGACATCACTCATGCTGCAACAAACAGAAAGTGAAGAGAGGGCTATGGTCCCCAGAAGAAGATGAAAAGCTCATAAACTACATTACGAATTACGGCCATGGCTGCTGGAGCTCAGTTCCTAAACTTGCAGAGGCCTGTTCTGAGACGGACGTCCGCATTGCCTCAAAAGTGGGGACATCGATATGGGCTCAGATAGCCAAGCACCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAGAAGAAGCTTATCCCCCATGAAGTCATTCCAGCTTTGGCCTCATTCTCTCATTTTCTTAACCCTAGTAGTGCTGGTTCTGATCAGGAAAGTTTCTTCACTACTCTAATCACAAACCCTAATTTCGGTCTTCAACAAGAACAGCCTTACCTCCCCGTTCCAACACCATTGCCACCATCTAGTTTCTACCATGGTGATCATAGTATTTTCAAGTTAGACTACACCAATTCTAGTTCCAACCGCCTTCATTTTCCAACCCCCATCCAATTACCATCAAACTATTCATCGTCATATGATTCGTCATGGTCATTAGGTTATCAACCCCATCTATTTGATTCGAATCATCAACAAGACCCAATTCTCAACAATATTGAAGTTGCTCCACATTTTAATATTGGAAATGAGCTTATGGTTCCGAGTGTGGCATCTCTACCAGGTTATGATCATGAGAATCTATCAGTTGTACCCACAATGCCTCAGTCTTGTGAGATCAATATTGATGGCAGTGCTTGCAGAGCAATGCCATTGGATCCACCTGATAATCATCCTCCACAAGAACTTGACTCACTTGCAAAAGTTTCATCGTGTTTCGGTCCATTTGGTGATCATGGCTCTTATAATCCTTTCGATCTGCAGCTTCCCTCCAATCAGCTGGAATTAGTTGATCCCGTCATATCATCGTTGCCAATGTTATCACAGCCGTCCCCGTCATCCGCGTCTTCATCCTTGTTACCACTACCAAGTAGCCAATTATTCATCACGAACCCTAATGTTCTTTCAAGCTTGGGAAGCCTGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

353

Amino Acids

38.69

Weight (kDa)

5.41

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 45	4.5e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	56 - 84	9.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	974
AciI	CCGC	3 cut(s)	157, 499, 972
AclWI	GGATC	3 cut(s)	782, 795, 917
AcoI	YGGCCR	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	392, 469, 632, 1038
AjnI	CCWGG	3 cut(s)	211, 691, 1050
AluBI	AGCT	9 cut(s)	73, 114, 268, 293, 664, 895, 910, 1041, 1059
AluI	AGCT	9 cut(s)	73, 114, 268, 293, 664, 895, 910, 1041, 1059
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	3 cut(s)	782, 795, 917
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	3 cut(s)	97, 135, 297
ApeKI	GCWGC	3 cut(s)	18, 105, 892
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	51, 851
AsuHPI	GGTGA	2 cut(s)	464, 872
AsuII	TTCGAA	1 cut(s)	596
AsuNHI	GCTAGC	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	51, 851
BamHI	GGATCC	1 cut(s)	787
BanII	GRGCYC	2 cut(s)	116, 193
BbsI	GAAGAC	2 cut(s)	380, 969
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	5, 92, 904
BccI	CCATC	5 cut(s)	442, 527, 538, 591, 752
BceAI	ACGGC	2 cut(s)	112, 943
BciT130I	CCWGG	3 cut(s)	213, 693, 1052
BclI	TGATCA	4 cut(s)	340, 454, 700, 862
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	5 cut(s)	324, 438, 489, 1056, 1060
BfmI	CTRYAG	1 cut(s)	890
BisI	GCNGC	3 cut(s)	19, 106, 893
BlsI	GCNGC	3 cut(s)	20, 107, 894
Bme1390I	CCNGG	3 cut(s)	213, 693, 1052
Bme18I	GGWCC	2 cut(s)	51, 851
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	51, 851
BmiI	GGNNCC	3 cut(s)	53, 672, 789
BmrFI	CCNGG	3 cut(s)	213, 693, 1052
BmsI	GCATC	1 cut(s)	692
BmtI	GCTAGC	1 cut(s)	1059
BoxI	GACNNNNGTC	1 cut(s)	152
BpiI	GAAGAC	2 cut(s)	380, 969
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	182
BsaBI	GATNNNNATC	2 cut(s)	597, 801
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	100, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	3 cut(s)	159, 425, 783
Bse8I	GATNNNNATC	2 cut(s)	597, 801
BseBI	CCWGG	3 cut(s)	213, 693, 1052
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	100, 448
BseGI	GGATG	4 cut(s)	519, 802, 968, 980
BseJI	GATNNNNATC	2 cut(s)	597, 801
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	3 cut(s)	159, 425, 783
BseMII	CTCAG	4 cut(s)	129, 135, 206, 749
BseXI	GCAGC	3 cut(s)	5, 92, 904
Bsh1236I	CGCG	1 cut(s)	974
BshFI	GGCC	3 cut(s)	99, 137, 299
BshVI	ATCGAT	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	250
BslFI	GGGAC	4 cut(s)	18, 37, 190, 946
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	4 cut(s)	18, 37, 190, 946
BsnI	GGCC	3 cut(s)	99, 137, 299
BsoBI	CYCGRG	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	116, 193
Bsp143I	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
Bsp19I	CCATGG	2 cut(s)	100, 448
BspACI	CCGC	3 cut(s)	157, 499, 972
BspANI	GGCC	3 cut(s)	99, 137, 299
BspCNI	CTCAG	4 cut(s)	128, 136, 205, 748
BspDI	ATCGAT	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	974
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	53, 672, 789
BspMAI	CTGCAG	1 cut(s)	894
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	3 cut(s)	782, 795, 917
BspT104I	TTCGAA	1 cut(s)	596
BsrDI	GCAATG	3 cut(s)	159, 425, 783
BssECI	CCNNGG	2 cut(s)	100, 448
BssMI	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	100, 448
Bst2UI	CCWGG	3 cut(s)	213, 693, 1052
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	768
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	769, 1057
BstDEI	CTNAG	4 cut(s)	115, 144, 192, 735
BstDSI	CCRYGG	2 cut(s)	100, 448
BstF5I	GGATG	4 cut(s)	519, 802, 968, 980
BstFNI	CGCG	1 cut(s)	974
BstKTI	GATC	8 cut(s)	343, 457, 703, 750, 790, 865, 889, 925
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 111, 197, 768, 773, 1047, 1056
BstNI	CCWGG	3 cut(s)	213, 693, 1052
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	3 cut(s)	211, 691, 1050
BstSFI	CTRYAG	1 cut(s)	890
BstUI	CGCG	1 cut(s)	974
BstV1I	GCAGC	3 cut(s)	5, 92, 904
BstV2I	GAAGAC	2 cut(s)	380, 969
BstX2I	RGATCY	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	99, 137, 299
BsuTUI	ATCGAT	1 cut(s)	182
BtgI	CCRYGG	2 cut(s)	100, 448
BtsCI	GGATG	4 cut(s)	519, 802, 968, 980
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	2 cut(s)	769, 1057
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	51, 851
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	1 cut(s)	963
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	7 cut(s)	15, 101, 278, 449, 561, 704, 866
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	4 cut(s)	115, 144, 192, 735
DpnI	GATC	8 cut(s)	342, 456, 702, 749, 789, 864, 888, 924
DpnII	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	100, 448
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	116, 193
Eco47I	GGWCC	2 cut(s)	51, 851
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	211, 691, 1050
EcoT14I	CCWWGG	2 cut(s)	100, 448
EcoT38I	GRGCYC	2 cut(s)	116, 193
ErhI	CCWWGG	2 cut(s)	100, 448
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	7 cut(s)	18, 104, 281, 452, 564, 707, 869
FaqI	GGGAC	4 cut(s)	18, 37, 190, 946
FatI	CATG	7 cut(s)	14, 100, 277, 448, 560, 703, 865
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	4 cut(s)	340, 454, 700, 862
Fnu4HI	GCNGC	3 cut(s)	19, 106, 893
FokI	GGATG	4 cut(s)	506, 789, 955, 967
FriOI	GRGCYC	2 cut(s)	116, 193
Fsp4HI	GCNGC	3 cut(s)	19, 106, 893
FspBI	CTAG	5 cut(s)	324, 438, 489, 1056, 1060
GluI	GCNGC	3 cut(s)	19, 106, 893
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	99, 137, 299
HgaI	GACGC	1 cut(s)	963
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	18, 104, 281, 452, 564, 707, 869
HindIII	AAGCTT	2 cut(s)	266, 1039
HinfI	GANTC	5 cut(s)	554, 593, 598, 709, 821
HphI	GGTGA	2 cut(s)	464, 872
Hpy188I	TCNGA	4 cut(s)	145, 195, 340, 675
Hpy188III	TCNNGA	3 cut(s)	344, 704, 1018
HpyAV	CCTTC	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	5 cut(s)	21, 131, 771, 830, 892
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 111, 197, 768, 773, 1047, 1056
HpyF3I	CTNAG	4 cut(s)	115, 144, 192, 735
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	18, 104, 281, 452, 564, 707, 869
Ksp22I	TGATCA	4 cut(s)	340, 454, 700, 862
Kzo9I	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
LmnI	GCTCC	2 cut(s)	111, 643
Lsp1109I	GCAGC	3 cut(s)	5, 92, 904
LweI	GCATC	1 cut(s)	692
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	5 cut(s)	324, 438, 489, 1056, 1060
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	987
MalI	GATC	8 cut(s)	342, 456, 702, 749, 789, 864, 888, 924
MboI	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
MboII	GAAGA	9 cut(s)	49, 71, 74, 228, 247, 274, 346, 380, 969
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	116, 193
MluCI	AATT	7 cut(s)	91, 379, 484, 524, 615, 914, 1007
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	3 cut(s)	443, 519, 536
MnlI	CCTC	8 cut(s)	35, 127, 175, 310, 419, 744, 816, 910
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	318, 648
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	910
MspR9I	CCNGG	3 cut(s)	213, 693, 1052
MvaI	CCWGG	3 cut(s)	213, 693, 1052
MvnI	CGCG	1 cut(s)	974
MwoI	GCNNNNNNNGC	7 cut(s)	105, 111, 197, 768, 773, 1047, 1056
NcoI	CCATGG	2 cut(s)	100, 448
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
NheI	GCTAGC	1 cut(s)	1055
NlaIII	CATG	7 cut(s)	18, 104, 281, 452, 564, 707, 869
NlaIV	GGNNCC	3 cut(s)	53, 672, 789
NspV	TTCGAA	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	250
PagI	TCATGA	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	554, 593, 598, 709
PkrI	GCNGC	3 cut(s)	20, 107, 894
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PshAI	GACNNNNGTC	1 cut(s)	152
PsiI	TTATAA	1 cut(s)	876
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	3 cut(s)	211, 691, 1050
PspGI	CCWGG	3 cut(s)	211, 691, 1050
PspN4I	GGNNCC	3 cut(s)	53, 672, 789
PspPI	GGNCC	2 cut(s)	51, 851
PspXI	VCTCGAGB	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	319, 351
PstI	CTGCAG	1 cut(s)	894
PsuI	RGATCY	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	318, 648
SatI	GCNGC	3 cut(s)	19, 106, 893
Sau3AI	GATC	8 cut(s)	340, 454, 700, 747, 787, 862, 886, 922
Sau96I	GGNCC	2 cut(s)	51, 851
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	3 cut(s)	213, 693, 1052
SduI	GDGCHC	2 cut(s)	116, 193
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	1 cut(s)	890
Sfr274I	CTCGAG	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	2 cut(s)	51, 851
SlaI	CTCGAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	7 cut(s)	91, 379, 484, 524, 615, 914, 1007
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	157, 499, 972
SspI	AATATT	3 cut(s)	628, 652, 754
SspMI	CTAG	5 cut(s)	324, 438, 489, 1056, 1060
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	211, 691, 1050
StyI	CCWWGG	2 cut(s)	100, 448
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	182, 251, 596, 885
TaqII	GACCGA	2 cut(s)	374, 839
TasI	AATT	7 cut(s)	91, 379, 484, 524, 615, 914, 1007
TfiI	GAWTC	4 cut(s)	554, 593, 598, 709
Tru1I	TTAA	2 cut(s)	318, 648
Tru9I	TTAA	2 cut(s)	318, 648
TscAI	CASTG	1 cut(s)	769
TseI	GCWGC	3 cut(s)	18, 105, 892
TspDTI	ATGAA	8 cut(s)	81, 243, 294, 494, 531, 828, 969, 1003
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	51, 851
XhoI	CTCGAG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	5 cut(s)	324, 438, 489, 1056, 1060
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.