Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

3338322 .. 3340119

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGACATCACTCCTGCTGCAACAAACAGAAAGTGAAGAGGGGGTTATGGTCCCCAGAAGAAGATGAAAAACTCATCAACTACATTACAACATATGGCCATGGCTGCTGGAGCTCAGTTCCTAAACTTGCAGGGCTACAGAGATGTGGAAAGAGCTGCAGACTGAGATGGATAAATTATTTGAGACCTGACTTAAAACGTGGGAGCTTCTCTCCCCAAGAGGCTGCCCTCATCATTGAACTCCATAGCATTCTAGGCAACAGATGGGCTCAGATAGCCAAGCATCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCAAGCATAAAAAAGAAGCTCATCCCTCATGAAGTTATTCCTGCCTTGGCCTCCTTTTCTCATGATATTCACAACCCTAGTGGTAATTCTGAGGAAAGTTTCTTCACCCTCACCACAAACCCTAATTTGGGTCCTCAACAAGACCAGCTATTCCTTCCCATTCCAAATCCAATGCCTCAAGGTTTCAATTTTCATGGTGATCATAATAACATCAATCTCATCAAGTTAGACCAGACCAATTACGGTTCCAATTTCGTTCATCATTTTCCTCATCCCCTCCAATTGCCATCAAATTCTTCCTCATATGAGTCCTCATGGTCTTTAGGCTATCAACCCCATCATCAATTTGATCCCAATCAACATCTTCAAAATTTCAGCATTGATGAAGCAGCTGCACATTATAATATCGGTAATGAACTTATGGTTCCAATTAGTATGCCATCATCAGCACCAGCAGTATATGAAAACCCTTCAATTCTACCTACACTGCCTAAATTGTGTGAGATTCTTGATGGTAATGTTTGTAGGATGCCATGTTACCCATCTGATCCACAAGACCTTGACTCACTTGCCAAATTATCATGTTTTCCATCTACTCATGGGGCTTATCCTCAAGATCTTCAGTTTCTATCCAGTCAATTGGAGTGCATTGATGCCATACTTTCATTGCCATCATCTTCCTCATCATCATCCCAGTTATCGGTATCTTCATCCTTGTCACCTTTATCGAGCACCCAATTTGTCGCAAACTCTAATGTTTTGGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

366

Amino Acids

40.6

Weight (kDa)

6.2

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AclWI	GGATC	2 cut(s)	671, 869
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	619, 697
AcuI	CTGAAG	1 cut(s)	932
AfiI	CCNNNNNNNGG	3 cut(s)	454, 455, 1027
AgsI	TTSAA	4 cut(s)	239, 514, 695, 801
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	114, 156, 207, 346, 475, 719
AluI	AGCT	6 cut(s)	114, 156, 207, 346, 475, 719
Alw21I	GWGCWC	2 cut(s)	116, 1061
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	671, 869
AoxI	GGCC	2 cut(s)	97, 375
ApeKI	GCWGC	6 cut(s)	18, 105, 156, 224, 716, 719
ApoI	RAATTY	2 cut(s)	619, 697
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	51, 458
AsuHPI	GGTGA	4 cut(s)	424, 430, 536, 1038
AvaII	GGWCC	2 cut(s)	51, 458
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	116, 271
Bbv12I	GWGCWC	2 cut(s)	116, 1061
BbvI	GCAGC	6 cut(s)	5, 92, 143, 211, 706, 728
BccI	CCATC	9 cut(s)	162, 258, 622, 672, 775, 833, 877, 925, 1006
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	254, 405, 1096
BfmI	CTRYAG	2 cut(s)	137, 157
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	6 cut(s)	19, 106, 157, 225, 717, 720
BlsI	GCNGC	6 cut(s)	20, 107, 158, 226, 718, 721
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	51, 458
BmgT120I	GGNCC	2 cut(s)	51, 458
BmiI	GGNNCC	4 cut(s)	53, 459, 574, 753
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	1015
BmsI	GCATC	3 cut(s)	292, 846, 970
BmuI	ACTGGG	1 cut(s)	1015
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	3 cut(s)	313, 489, 924
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	100, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 455, 1027
Bse1I	ACTGG	2 cut(s)	960, 1021
Bse3DI	GCAATG	1 cut(s)	992
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	100, 372
BseGI	GGATG	5 cut(s)	348, 598, 861, 1016, 1037
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	454, 455, 1027
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	4 cut(s)	129, 155, 284, 408
BseNI	ACTGG	2 cut(s)	960, 1021
BseXI	GCAGC	6 cut(s)	5, 92, 143, 211, 706, 728
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	2 cut(s)	99, 377
BsiHKAI	GWGCWC	2 cut(s)	116, 1061
BslFI	GGGAC	2 cut(s)	18, 37
BslI	CCNNNNNNNGG	3 cut(s)	454, 455, 1027
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	18, 37
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	99, 377
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	116, 271, 1061
Bsp143I	GATC	4 cut(s)	526, 676, 874, 943
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	2 cut(s)	99, 377
BspCNI	CTCAG	4 cut(s)	128, 156, 283, 409
BspHI	TCATGA	2 cut(s)	355, 388
BspLI	GGNNCC	4 cut(s)	53, 459, 574, 753
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	671, 869
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	992
BsrI	ACTGG	2 cut(s)	960, 1021
BssECI	CCNNGG	2 cut(s)	100, 372
BssMI	GATC	4 cut(s)	526, 676, 874, 943
BssT1I	CCWWGG	2 cut(s)	100, 372
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	572
Bst6I	CTCTTC	1 cut(s)	32
BstDEI	CTNAG	4 cut(s)	115, 164, 270, 417
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	5 cut(s)	348, 598, 861, 1016, 1037
BstKTI	GATC	4 cut(s)	529, 679, 877, 946
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	526, 676, 874, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 111, 255, 275
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	137, 157
BstV1I	GCAGC	6 cut(s)	5, 92, 143, 211, 706, 728
BstX2I	RGATCY	1 cut(s)	943
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	2 cut(s)	99, 377
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	348, 598, 861, 1016, 1037
BtsI	GCAGTG	1 cut(s)	812
BtsIMutI	CAGTG	1 cut(s)	812
CciI	TCATGA	2 cut(s)	355, 388
Cfr13I	GGNCC	2 cut(s)	51, 458
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	8 cut(s)	101, 356, 389, 521, 642, 861, 909, 926
DdeI	CTNAG	4 cut(s)	115, 164, 270, 417
DpnI	GATC	4 cut(s)	528, 678, 876, 945
DpnII	GATC	4 cut(s)	526, 676, 874, 943
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	100, 372
Eco24I	GRGCYC	2 cut(s)	116, 271
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	51, 458
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	100, 372
EcoT38I	GRGCYC	2 cut(s)	116, 271
ErhI	CCWWGG	2 cut(s)	100, 372
FaeI	CATG	8 cut(s)	104, 359, 392, 524, 645, 864, 912, 929
FaqI	GGGAC	2 cut(s)	18, 37
FatI	CATG	8 cut(s)	100, 355, 388, 520, 641, 860, 908, 925
FauNDI	CATATG	2 cut(s)	94, 631
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	6 cut(s)	19, 106, 157, 225, 717, 720
FokI	GGATG	5 cut(s)	335, 585, 868, 1003, 1024
FriOI	GRGCYC	2 cut(s)	116, 271
Fsp4HI	GCNGC	6 cut(s)	19, 106, 157, 225, 717, 720
FspBI	CTAG	3 cut(s)	254, 405, 1096
GluI	GCNGC	6 cut(s)	19, 106, 157, 225, 717, 720
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	99, 377
Hin1II	CATG	8 cut(s)	104, 359, 392, 524, 645, 864, 912, 929
HinfI	GANTC	3 cut(s)	635, 832, 890
HphI	GGTGA	4 cut(s)	424, 430, 536, 1038
Hpy188I	TCNGA	3 cut(s)	273, 418, 874
Hpy188III	TCNNGA	4 cut(s)	356, 389, 836, 941
HpyAV	CCTTC	2 cut(s)	491, 807
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	21, 131, 159, 722, 975
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 111, 255, 275
HpyF3I	CTNAG	4 cut(s)	115, 164, 270, 417
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	8 cut(s)	104, 359, 392, 524, 645, 864, 912, 929
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	526, 676, 874, 943
LmnI	GCTCC	2 cut(s)	111, 204
Lsp1109I	GCAGC	6 cut(s)	5, 92, 143, 211, 706, 728
LweI	GCATC	3 cut(s)	292, 846, 970
MaeI	CTAG	3 cut(s)	254, 405, 1096
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	863, 1044
MalI	GATC	4 cut(s)	528, 678, 876, 945
MboI	GATC	4 cut(s)	526, 676, 874, 943
MfeI	CAATTG	2 cut(s)	608, 965
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	3 cut(s)	116, 271, 1061
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	644, 884
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	2 cut(s)	608, 965
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	105, 111, 255, 275
NcoI	CCATGG	1 cut(s)	100
NdeI	CATATG	2 cut(s)	94, 631
NdeII	GATC	4 cut(s)	526, 676, 874, 943
NlaIII	CATG	8 cut(s)	104, 359, 392, 524, 645, 864, 912, 929
NlaIV	GGNNCC	4 cut(s)	53, 459, 574, 753
NmuCI	GTSAC	1 cut(s)	1044
PagI	TCATGA	2 cut(s)	355, 388
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	832
PkrI	GCNGC	6 cut(s)	20, 107, 158, 226, 718, 721
PleI	GAGTC	2 cut(s)	643, 884
PpsI	GAGTC	2 cut(s)	643, 884
PpuMI	RGGWCCY	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	53, 459, 574, 753
PspPI	GGNCC	2 cut(s)	51, 458
PspPPI	RGGWCCY	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	943
PvuII	CAGCTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	6 cut(s)	19, 106, 157, 225, 717, 720
Sau3AI	GATC	4 cut(s)	526, 676, 874, 943
Sau96I	GGNCC	2 cut(s)	51, 458
SchI	GAGTC	2 cut(s)	644, 884
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	116, 271, 1061
SfaNI	GCATC	3 cut(s)	292, 846, 970
SfcI	CTRYAG	2 cut(s)	137, 157
SinI	GGWCC	2 cut(s)	51, 458
SmlI	CTYRAG	3 cut(s)	328, 504, 939
SmoI	CTYRAG	3 cut(s)	328, 504, 939
SspMI	CTAG	3 cut(s)	254, 405, 1096
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	100, 372
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	1055
TfiI	GAWTC	1 cut(s)	832
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	1044
TseI	GCWGC	6 cut(s)	18, 105, 156, 224, 716, 719
Tsp45I	GTSAC	1 cut(s)	1044
TspRI	CASTG	1 cut(s)	819
VpaK11BI	GGWCC	2 cut(s)	51, 458
XapI	RAATTY	2 cut(s)	619, 697
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	3 cut(s)	254, 405, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.