Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Reverse (-)

57738973 .. 57741116

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTCTAATAACTGAGGCAGGTCTCCAAAGATGTGGAAAGAGCTGCAGACTGAGATGGATAAATTATCTGAGACCCGACTTGAAACGTGGGAGCTTCTCTTCCCAGGAAGCTGCACTCATCATTCAACTCCATAGCATTTTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAGAAGAAGCTTATCCCCCATGATGTCATTCCAGCTTTGGCCTCATTCTCTCATTTTCTTAACCCTAGTAATGCTGGTTCTGATCAGGAAAGTTTTTTCACTACTCTAATCACAAACCCTAATTTCGGTCTTCAGCAAGAACAGCCTTACCTTCCCTTTCCAACACCATTGCCACCATCTAGTTTCTACCATGGTGATCACAGTATTTTCAAGTTAGACTACACCAATTACAGTTCCAACCGCCTTCATTTTCCAACCCCCATCCAATTACCATCAAACTATTCATCGTCATATGATTCGTCATGGTCATTAGGTTATCAACCCCATCTATTTGGTTCGAATCATCAACAAGATCAAATTCTCAACAATATTGAAGTTGCTCCACATTTTAATATTGGAAATGAGCTTATGGTTCCGAGTGTGGCATCTCTACCAGGTTATGATCATGAGAATCTATCAGTTGTACCCACAATGCCTCAGTCTTGTGAGATCAATATTGATGGCAGTGCTTGCAGAGCAATGCCATTTGATCCACCTGACAATCATCCTCCACAAGAACTTGACTCACTTGCAAAAGTTTCATCGTGTTTCGGTCCATTTGGTGATCATGGCTCTTATAATCCTTTCGATCTGCAGCTTCCCTCCAATCAGCTGGAATTAGTTGATCCCGTCATATCATCGTTGCCAATGTTATCACAGCCGTCCCCGTCATCCGCGTCGTCATCCTTGTTACCACTACCAAGTAGCCAATTATTCATCACGAACCGTAATGTTCTTTCAAGCTTGGGAAGCCTGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

342

Amino Acids

37.77

Weight (kDa)

5.86

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 73	1.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	33 - 78	4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	11
AccII	CGCG	1 cut(s)	941
AciI	CCGC	2 cut(s)	466, 939
AclWI	GGATC	2 cut(s)	749, 884
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	85, 128, 436, 599, 1005
AjnI	CCWGG	4 cut(s)	105, 178, 658, 1017
Alw26I	GTCTC	2 cut(s)	29, 67
AlwI	GGATC	2 cut(s)	749, 884
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	45, 113, 859
ApoI	RAATTY	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	2 cut(s)	431, 839
AsuII	TTCGAA	1 cut(s)	563
AsuNHI	GCTAGC	1 cut(s)	1022
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	32, 100, 871
BccI	CCATC	7 cut(s)	51, 147, 409, 494, 505, 558, 719
BceAI	ACGGC	1 cut(s)	910
BciT130I	CCWGG	4 cut(s)	107, 180, 660, 1019
BclI	TGATCA	4 cut(s)	307, 421, 667, 829
BcoDI	GTCTC	2 cut(s)	29, 67
BfaI	CTAG	4 cut(s)	291, 405, 1023, 1027
BfmI	CTRYAG	2 cut(s)	46, 857
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	46, 114, 860
BlsI	GCNGC	3 cut(s)	47, 115, 861
Bme1390I	CCNGG	4 cut(s)	107, 180, 660, 1019
Bme18I	GGWCC	1 cut(s)	818
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	4 cut(s)	107, 180, 660, 1019
BmsI	GCATC	1 cut(s)	659
BmtI	GCTAGC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	563
BsaI	GGTCTC	2 cut(s)	29, 67
BsaJI	CCNNGG	2 cut(s)	105, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse3DI	GCAATG	2 cut(s)	392, 750
BseBI	CCWGG	4 cut(s)	107, 180, 660, 1019
BseDI	CCNNGG	2 cut(s)	105, 415
BseGI	GGATG	4 cut(s)	486, 769, 935, 947
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	2 cut(s)	392, 750
BseMII	CTCAG	5 cut(s)	6, 44, 62, 173, 716
BseXI	GCAGC	3 cut(s)	32, 100, 871
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	941
BshFI	GGCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	29, 67
BsmFI	GGGAC	1 cut(s)	913
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	2 cut(s)	29, 67
BsoBI	CYCGRG	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	2 cut(s)	466, 939
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	5 cut(s)	7, 45, 63, 172, 715
BspFNI	CGCG	1 cut(s)	941
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	2 cut(s)	50, 861
BspMI	ACCTGC	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	749, 884
BspT104I	TTCGAA	1 cut(s)	563
BspTNI	GGTCTC	2 cut(s)	29, 67
BsrDI	GCAATG	2 cut(s)	392, 750
BssECI	CCNNGG	2 cut(s)	105, 415
BssMI	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	4 cut(s)	107, 180, 660, 1019
Bst4CI	ACNGT	3 cut(s)	428, 458, 992
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	735
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	736, 1024
BstDEI	CTNAG	5 cut(s)	15, 53, 71, 159, 702
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	486, 769, 935, 947
BstFNI	CGCG	1 cut(s)	941
BstKTI	GATC	9 cut(s)	310, 424, 580, 670, 717, 757, 832, 856, 892
BstMAI	GTCTC	2 cut(s)	29, 67
BstMBI	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 164, 367, 735, 740, 1014, 1023
BstNI	CCWGG	4 cut(s)	107, 180, 660, 1019
BstSCI	CCNGG	4 cut(s)	105, 178, 658, 1017
BstSFI	CTRYAG	2 cut(s)	46, 857
BstUI	CGCG	1 cut(s)	941
BstV1I	GCAGC	3 cut(s)	32, 100, 871
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	3 cut(s)	35, 557, 877
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	486, 769, 935, 947
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	736, 1024
CciI	TCATGA	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	818
CseI	GACGC	1 cut(s)	930
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	5 cut(s)	245, 416, 528, 671, 833
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	5 cut(s)	15, 53, 71, 159, 702
DpnI	GATC	9 cut(s)	309, 423, 579, 669, 716, 756, 831, 855, 891
DpnII	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	29, 67
Eco47I	GGWCC	1 cut(s)	818
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	217
EcoRII	CCWGG	4 cut(s)	105, 178, 658, 1017
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	5 cut(s)	248, 419, 531, 674, 836
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	5 cut(s)	244, 415, 527, 670, 832
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	4 cut(s)	307, 421, 667, 829
Fnu4HI	GCNGC	3 cut(s)	46, 114, 860
FokI	GGATG	4 cut(s)	473, 756, 922, 934
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	46, 114, 860
FspBI	CTAG	4 cut(s)	291, 405, 1023, 1027
GluI	GCNGC	3 cut(s)	46, 114, 860
HaeIII	GGCC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	930
Hin1II	CATG	5 cut(s)	248, 419, 531, 674, 836
HindIII	AAGCTT	2 cut(s)	233, 1006
HinfI	GANTC	4 cut(s)	521, 565, 676, 788
HphI	GGTGA	2 cut(s)	431, 839
Hpy188I	TCNGA	4 cut(s)	72, 162, 307, 642
Hpy188III	TCNNGA	3 cut(s)	311, 671, 985
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	2 cut(s)	386, 479
HpyCH4III	ACNGT	3 cut(s)	428, 458, 992
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	48, 116, 738, 797, 859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 164, 367, 735, 740, 1014, 1023
HpyF3I	CTNAG	5 cut(s)	15, 53, 71, 159, 702
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	248, 419, 531, 674, 836
Ksp22I	TGATCA	4 cut(s)	307, 421, 667, 829
Kzo9I	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
LmnI	GCTCC	2 cut(s)	93, 610
Lsp1109I	GCAGC	3 cut(s)	32, 100, 871
LweI	GCATC	1 cut(s)	659
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	4 cut(s)	291, 405, 1023, 1027
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	954
MalI	GATC	9 cut(s)	309, 423, 579, 669, 716, 756, 831, 855, 891
MboI	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
MboII	GAAGA	5 cut(s)	93, 195, 214, 241, 347
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	7 cut(s)	64, 346, 451, 491, 582, 881, 974
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	3 cut(s)	410, 486, 503
MnlI	CCTC	5 cut(s)	10, 277, 711, 783, 877
MseI	TTAA	2 cut(s)	285, 615
MspA1I	CMGCKG	1 cut(s)	877
MspR9I	CCNGG	4 cut(s)	107, 180, 660, 1019
MvaI	CCWGG	4 cut(s)	107, 180, 660, 1019
MvnI	CGCG	1 cut(s)	941
MwoI	GCNNNNNNNGC	7 cut(s)	144, 164, 367, 735, 740, 1014, 1023
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
NheI	GCTAGC	1 cut(s)	1022
NlaIII	CATG	5 cut(s)	248, 419, 531, 674, 836
NlaIV	GGNNCC	1 cut(s)	639
NspV	TTCGAA	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	217
PagI	TCATGA	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	521, 565, 676
PkrI	GCNGC	3 cut(s)	47, 115, 861
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	4 cut(s)	105, 178, 658, 1017
PspGI	CCWGG	4 cut(s)	105, 178, 658, 1017
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	818
PspXI	VCTCGAGB	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PstI	CTGCAG	2 cut(s)	50, 861
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	285, 615
SatI	GCNGC	3 cut(s)	46, 114, 860
Sau3AI	GATC	9 cut(s)	307, 421, 577, 667, 714, 754, 829, 853, 889
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	4 cut(s)	107, 180, 660, 1019
SduI	GDGCHC	1 cut(s)	160
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	2 cut(s)	46, 857
Sfr274I	CTCGAG	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	563
SinI	GGWCC	1 cut(s)	818
SlaI	CTCGAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	7 cut(s)	64, 346, 451, 491, 582, 881, 974
SsiI	CCGC	2 cut(s)	466, 939
SspI	AATATT	3 cut(s)	595, 619, 721
SspMI	CTAG	4 cut(s)	291, 405, 1023, 1027
StyD4I	CCNGG	4 cut(s)	105, 178, 658, 1017
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	428, 458, 992
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	218, 563, 852
TaqII	GACCGA	2 cut(s)	341, 806
TasI	AATT	7 cut(s)	64, 346, 451, 491, 582, 881, 974
TfiI	GAWTC	3 cut(s)	521, 565, 676
Tru1I	TTAA	2 cut(s)	285, 615
Tru9I	TTAA	2 cut(s)	285, 615
TscAI	CASTG	1 cut(s)	736
TseI	GCWGC	3 cut(s)	45, 113, 859
TspDTI	ATGAA	5 cut(s)	210, 461, 498, 795, 970
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	1 cut(s)	582
XhoI	CTCGAG	1 cut(s)	217
XspI	CTAG	4 cut(s)	291, 405, 1023, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.