Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016065.1

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

3110 .. 4782

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016065.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgggacatcactcatgctgcaacaaacagaaagtgaagagagggctatggtccccagaagaagatgaaaagctcataaactacattacgaattacggccatggctgctggagctcagttcctaaacttgcaggtctccaaagatgtggaaagagctgcagactgagatggataaattatctgagaccagacttgaaacgtgggagcttctcttcccaggaagctgcactcatcattcaactccatagcattttaggcaacagtggggacatcgatgtttctgtagcgttctggcggcgacggcggcgctggtcttgccagactgggccacgggcatcccaaaccgcttcaccatggagatcgaggtcgaaggttctgggcagcgacctcacccaaactagtagccaacgagtccacaagcaagaagaaggtcaagcatcgatgtccggcaagccgtcggctcctgaacgctgtagaagcatcgatgtccgcacttttggggcagtatgggctcagatagccaagcacctaccaggaagaacagataatgaagtgaagaacttttggaactcgagcataaagaagaagctcatcccccatgatgtcattccagcattggcctcgttctctcattttcttaaccctagtaatgctggttctgatcaggaaagtttcttcactactctaatcgcaaaccctaatttcggtcttcaacaagaacagccttaccttccctttccaacaccattgccaccatctagtttctaccatggtgatcacagtattttaaagttagactacaccaattatagttccaaccgccttcattttccaacccccatccaattaccatcaaactattcatcgttatatgattcgtcatggtcattaggttatcaaccccatctatttgattcgaatcatcaacaagatcaaattctcaacaatattgaagttgctccacattttaatattggaaatgagcttatggttccgagtgtggcatctctaccaggttatgatcatgagaatctatcagttgtacccacaatgcctcagtcttgtgagatcaatattgatggcagtgcttgcagagcaatgccatttgatccacctgacaatcatcttccacaagaacttgactcacttgcaaaagtttcatcgtgtttcggtccatttggtgatcatggctcttataatcctttcgatctgcagcttccctccaatcaggtggaattagttgatcccgtcatatcatcgttgccaacattggcacagccgtccccgtcatccgcatcttcatccttgttaccactaccaagtagccaattattcatcacgaaccgtaatgttctttcaagcttgggaagcctggctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

460

Amino Acids

51.04

Weight (kDa)

7.65

Isoelectric Point (pI)

71.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1197
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	6 cut(s)	295, 304, 345, 490, 820, 1293
AclWI	GGATC	2 cut(s)	1103, 1238
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	936
AfaI	GTAC	1 cut(s)	1044
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	5 cut(s)	196, 239, 713, 953, 1359
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	4 cut(s)	216, 532, 1012, 1371
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	140, 178
AlwI	GGATC	2 cut(s)	1103, 1238
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	3 cut(s)	97, 326, 618
ApeKI	GCWGC	6 cut(s)	18, 105, 156, 224, 381, 1213
ApoI	RAATTY	1 cut(s)	936
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	51, 326, 1172
AsuHPI	GGTGA	4 cut(s)	342, 382, 785, 1193
AsuII	TTCGAA	1 cut(s)	917
AsuNHI	GCTAGC	1 cut(s)	1376
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	51, 1172
BanII	GRGCYC	2 cut(s)	116, 514
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	5, 92, 143, 211, 393, 1225
BccI	CCATC	6 cut(s)	162, 763, 848, 859, 912, 1073
BceAI	ACGGC	4 cut(s)	112, 317, 439, 1264
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	4 cut(s)	218, 534, 1014, 1373
BclI	TGATCA	4 cut(s)	661, 775, 1021, 1183
BcoDI	GTCTC	2 cut(s)	140, 178
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	5 cut(s)	399, 645, 759, 1377, 1381
BfmI	CTRYAG	4 cut(s)	157, 282, 472, 1211
BfoI	RGCGCY	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	8 cut(s)	19, 106, 157, 225, 296, 305, 382, 1214
BlsI	GCNGC	8 cut(s)	20, 107, 158, 226, 297, 306, 383, 1215
Bme1390I	CCNGG	4 cut(s)	218, 534, 1014, 1373
Bme18I	GGWCC	2 cut(s)	51, 1172
BmeT110I	CYCGRG	1 cut(s)	571
BmgT120I	GGNCC	3 cut(s)	51, 326, 1172
BmiI	GGNNCC	3 cut(s)	53, 462, 993
BmrFI	CCNGG	4 cut(s)	218, 534, 1014, 1373
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	5 cut(s)	344, 446, 489, 1013, 1304
BmtI	GCTAGC	1 cut(s)	1380
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	917
Bsa29I	ATCGAT	3 cut(s)	273, 440, 483
BsaBI	GATNNNNATC	1 cut(s)	918
BsaI	GGTCTC	2 cut(s)	140, 178
BsaJI	CCNNGG	5 cut(s)	100, 216, 329, 353, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	2 cut(s)	746, 1104
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	4 cut(s)	218, 534, 1014, 1373
BseCI	ATCGAT	3 cut(s)	273, 440, 483
BseDI	CCNNGG	5 cut(s)	100, 216, 329, 353, 769
BseGI	GGATG	5 cut(s)	335, 591, 840, 1289, 1301
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	746, 1104
BseMII	CTCAG	5 cut(s)	129, 155, 173, 527, 1070
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	6 cut(s)	5, 92, 143, 211, 393, 1225
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	99, 328, 620
BshVI	ATCGAT	3 cut(s)	273, 440, 483
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	4 cut(s)	18, 37, 281, 1267
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	2 cut(s)	140, 178
BsmFI	GGGAC	4 cut(s)	18, 37, 281, 1267
BsnI	GGCC	3 cut(s)	99, 328, 620
Bso31I	GGTCTC	2 cut(s)	140, 178
BsoBI	CYCGRG	1 cut(s)	571
Bsp119I	TTCGAA	1 cut(s)	917
Bsp1286I	GDGCHC	2 cut(s)	116, 514
Bsp19I	CCATGG	3 cut(s)	100, 353, 769
BspACI	CCGC	6 cut(s)	295, 304, 345, 490, 820, 1293
BspANI	GGCC	3 cut(s)	99, 328, 620
BspCNI	CTCAG	5 cut(s)	128, 156, 174, 526, 1069
BspDI	ATCGAT	3 cut(s)	273, 440, 483
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	3 cut(s)	53, 462, 993
BspMAI	CTGCAG	2 cut(s)	161, 1215
BspMI	ACCTGC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	1380
BspPI	GGATC	2 cut(s)	1103, 1238
BspT104I	TTCGAA	1 cut(s)	917
BspTNI	GGTCTC	2 cut(s)	140, 178
BsrDI	GCAATG	2 cut(s)	746, 1104
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	5 cut(s)	100, 216, 329, 353, 769
BssT1I	CCWWGG	3 cut(s)	100, 353, 769
Bst2UI	CCWGG	4 cut(s)	218, 534, 1014, 1373
Bst4CI	ACNGT	3 cut(s)	263, 782, 1346
Bst6I	CTCTTC	2 cut(s)	32, 217
BstAPI	GCANNNNNTGC	1 cut(s)	1089
BstBI	TTCGAA	1 cut(s)	917
BstC8I	GCNNGC	3 cut(s)	452, 1090, 1378
BstDEI	CTNAG	5 cut(s)	115, 164, 182, 513, 1056
BstDSI	CCRYGG	4 cut(s)	100, 329, 353, 769
BstF5I	GGATG	5 cut(s)	335, 591, 840, 1289, 1301
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstMAI	GTCTC	2 cut(s)	140, 178
BstNI	CCWGG	4 cut(s)	218, 534, 1014, 1373
BstSCI	CCNGG	4 cut(s)	216, 532, 1012, 1371
BstSFI	CTRYAG	4 cut(s)	157, 282, 472, 1211
BstV1I	GCAGC	6 cut(s)	5, 92, 143, 211, 393, 1225
BstV2I	GAAGAC	1 cut(s)	701
BstXI	CCANNNNNNTGG	2 cut(s)	146, 1231
Bsu15I	ATCGAT	3 cut(s)	273, 440, 483
BsuRI	GGCC	3 cut(s)	99, 328, 620
BsuTUI	ATCGAT	3 cut(s)	273, 440, 483
BtgI	CCRYGG	4 cut(s)	100, 329, 353, 769
BtsCI	GGATG	5 cut(s)	335, 591, 840, 1289, 1301
BtsI	GCAGTG	1 cut(s)	1090
BtsIMutI	CAGTG	2 cut(s)	268, 1090
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	452, 1090, 1378
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	3 cut(s)	51, 326, 1172
ClaI	ATCGAT	3 cut(s)	273, 440, 483
CsiI	ACCWGGT	1 cut(s)	1012
Csp6I	GTAC	1 cut(s)	1043
CviAII	CATG	8 cut(s)	15, 101, 354, 599, 770, 882, 1025, 1187
CviQI	GTAC	1 cut(s)	1043
DdeI	CTNAG	5 cut(s)	115, 164, 182, 513, 1056
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	32, 217
EarI	CTCTTC	2 cut(s)	32, 217
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	3 cut(s)	100, 353, 769
Eco24I	GRGCYC	2 cut(s)	116, 514
Eco31I	GGTCTC	2 cut(s)	140, 178
Eco47I	GGWCC	2 cut(s)	51, 1172
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	4 cut(s)	216, 532, 1012, 1371
EcoT14I	CCWWGG	3 cut(s)	100, 353, 769
EcoT38I	GRGCYC	2 cut(s)	116, 514
ErhI	CCWWGG	3 cut(s)	100, 353, 769
FaeI	CATG	8 cut(s)	18, 104, 357, 602, 773, 885, 1028, 1190
FaqI	GGGAC	4 cut(s)	18, 37, 281, 1267
FatI	CATG	8 cut(s)	14, 100, 353, 598, 769, 881, 1024, 1186
FbaI	TGATCA	4 cut(s)	661, 775, 1021, 1183
Fnu4HI	GCNGC	8 cut(s)	19, 106, 157, 225, 296, 305, 382, 1214
FokI	GGATG	5 cut(s)	322, 578, 827, 1276, 1288
FriOI	GRGCYC	2 cut(s)	116, 514
Fsp4HI	GCNGC	8 cut(s)	19, 106, 157, 225, 296, 305, 382, 1214
FspBI	CTAG	5 cut(s)	399, 645, 759, 1377, 1381
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	8 cut(s)	19, 106, 157, 225, 296, 305, 382, 1214
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	3 cut(s)	99, 328, 620
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	8 cut(s)	18, 104, 357, 602, 773, 885, 1028, 1190
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	1360
HinfI	GANTC	6 cut(s)	411, 875, 914, 919, 1030, 1142
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	4 cut(s)	342, 382, 785, 1193
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	183, 516, 661, 996
Hpy188III	TCNNGA	4 cut(s)	464, 665, 1025, 1339
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	303, 460
HpyAV	CCTTC	4 cut(s)	364, 422, 740, 833
HpyCH4III	ACNGT	3 cut(s)	263, 782, 1346
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	21, 131, 159, 227, 1092, 1151, 1213
HpyF3I	CTNAG	5 cut(s)	115, 164, 182, 513, 1056
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	8 cut(s)	18, 104, 357, 602, 773, 885, 1028, 1190
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	4 cut(s)	661, 775, 1021, 1183
LmnI	GCTCC	4 cut(s)	111, 204, 466, 964
Lsp1109I	GCAGC	6 cut(s)	5, 92, 143, 211, 393, 1225
LweI	GCATC	5 cut(s)	344, 446, 489, 1013, 1304
MabI	ACCWGGT	1 cut(s)	1012
MaeI	CTAG	5 cut(s)	399, 645, 759, 1377, 1381
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	1308
MhlI	GDGCHC	2 cut(s)	116, 514
MluCI	AATT	8 cut(s)	91, 175, 700, 805, 845, 936, 1235, 1328
MlyI	GAGTC	2 cut(s)	420, 1136
MmeI	TCCRAC	3 cut(s)	764, 840, 857
MnlI	CCTC	6 cut(s)	35, 357, 398, 631, 1065, 1231
MseI	TTAA	3 cut(s)	639, 788, 969
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	4 cut(s)	218, 534, 1014, 1373
MvaI	CCWGG	4 cut(s)	218, 534, 1014, 1373
NcoI	CCATGG	3 cut(s)	100, 353, 769
NheI	GCTAGC	1 cut(s)	1376
NlaIII	CATG	8 cut(s)	18, 104, 357, 602, 773, 885, 1028, 1190
NlaIV	GGNNCC	3 cut(s)	53, 462, 993
NspV	TTCGAA	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	571
PagI	TCATGA	1 cut(s)	1024
PfeI	GAWTC	4 cut(s)	875, 914, 919, 1030
PkrI	GCNGC	8 cut(s)	20, 107, 158, 226, 297, 306, 383, 1215
PleI	GAGTC	2 cut(s)	419, 1136
PpsI	GAGTC	2 cut(s)	419, 1136
PsiI	TTATAA	1 cut(s)	1197
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	4 cut(s)	216, 532, 1012, 1371
PspGI	CCWGG	4 cut(s)	216, 532, 1012, 1371
PspN4I	GGNNCC	3 cut(s)	53, 462, 993
PspPI	GGNCC	3 cut(s)	51, 326, 1172
PspXI	VCTCGAGB	1 cut(s)	571
PsrI	GAACNNNNNNTAC	2 cut(s)	640, 672
PstI	CTGCAG	2 cut(s)	161, 1215
RsaI	GTAC	1 cut(s)	1044
RsaNI	GTAC	1 cut(s)	1043
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	639, 788, 969
SatI	GCNGC	8 cut(s)	19, 106, 157, 225, 296, 305, 382, 1214
Sau96I	GGNCC	3 cut(s)	51, 326, 1172
SchI	GAGTC	2 cut(s)	420, 1136
ScrFI	CCNGG	4 cut(s)	218, 534, 1014, 1373
SduI	GDGCHC	2 cut(s)	116, 514
SexAI	ACCWGGT	1 cut(s)	1012
SfaNI	GCATC	5 cut(s)	344, 446, 489, 1013, 1304
SfcI	CTRYAG	4 cut(s)	157, 282, 472, 1211
Sfr274I	CTCGAG	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	917
SinI	GGWCC	2 cut(s)	51, 1172
SlaI	CTCGAG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	8 cut(s)	91, 175, 700, 805, 845, 936, 1235, 1328
SsiI	CCGC	6 cut(s)	295, 304, 345, 490, 820, 1293
SspI	AATATT	3 cut(s)	949, 973, 1075
SspMI	CTAG	5 cut(s)	399, 645, 759, 1377, 1381
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	216, 532, 1012, 1371
StyI	CCWWGG	3 cut(s)	100, 353, 769
TaaI	ACNGT	3 cut(s)	263, 782, 1346
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	8 cut(s)	273, 362, 368, 440, 483, 572, 917, 1206
TaqII	GACCGA	2 cut(s)	695, 1160
TasI	AATT	8 cut(s)	91, 175, 700, 805, 845, 936, 1235, 1328
TauI	GCSGC	2 cut(s)	298, 307
TfiI	GAWTC	4 cut(s)	875, 914, 919, 1030
Tru1I	TTAA	3 cut(s)	639, 788, 969
Tru9I	TTAA	3 cut(s)	639, 788, 969
TscAI	CASTG	2 cut(s)	268, 1090
TseI	GCWGC	6 cut(s)	18, 105, 156, 224, 381, 1213
TspDTI	ATGAA	7 cut(s)	81, 564, 815, 852, 1149, 1290, 1324
TspRI	CASTG	2 cut(s)	268, 1090
VpaK11BI	GGWCC	2 cut(s)	51, 1172
XapI	RAATTY	1 cut(s)	936
XhoI	CTCGAG	1 cut(s)	571
XspI	CTAG	5 cut(s)	399, 645, 759, 1377, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.