Rorug02G0384600
MYB Family

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006298
Physical Location & Seq
Forward (+)
49061895 .. 49067173
5279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0384600.1

Sequence Viewer

Length: 1734 bp
ATGGATGGAAGTAATTCTAGTGTAGATGACAATGATGTTGACTGGAACACAGATGATGAAATCGACAACTTCACTCTCTCGCCTTCTTCGAGTGTGATACATCCTCGTGGAGAAGCTAATGTGCTCTCTTGGGAGGTGAGCTCAGCTCCAAGTTCTCCCAATACCAAAGTTCTTGATCAGTTTATAGGGATGGGATTTTCTAAGAAGATGGTTTCCAATGCAATTCAGAAACATGGAGAAGAAAATACAGATGCAATTTTGGAAATGCTCCTCACATATTCGGCTCTAGAAAGTTCAACTCATGAACAGAAACAAATGGATTCTGATCACTTCTCCTCGGATTATGTGGAAAGCTTTCTAGATGGTTTTTCAGATATGGATAGCTGTGATGATGAGGAAATCATAAGTCATACATCTGAGGAGGAAAAACTAATGTCCTTGATCACAATGGGGTACACAGAAGAGGAGGCTTCCATGGCAGTAGAAAGATGTGGTCATAACTCCTCACTTCTGGAATTGACTGATTTTTTATCTGCTGCTCAATTGGCAAAGGAAGAAGATGCCCTTCTTCCTCTTGAAGAGAAGCCCAGACTAAAACATGTGCACACTGATCCTAAGAAGAAGAGGAAAATTATTGTATCTGATATATCGAAAAGGAAAAGGCAGATGGGGCACATAGACACAGATACTGAGACACTTTGCCTCCCAAATCCAATGATTGGGTTTGGGATTCCAACTGGAGCATGGAAATCTAACAGAATTCTTCCAAAGGCAGCCATAGGGCCTCCATATTTTTATTATGAGAATGTCGCCCTTACTCCTAAAGGGGTTTGGGACACTATATCCAAATTCCTATATGATGTTCCCCCTGAGTTTGTTGATTCAAAACATTTCTGTTGTGCTGCTAGAAAAAGGGGTTACGTCCATAATCTTCCTACTGAGAACAGATTTCCTCTTGTTCCGCTCCCCCCACAAACCATACATGAGGCATTTCCCTTGACAAAAAAATGGTGGCCTTCTTGGGACATAAGAACAAAGCTAAACTGTATAGTAACTTGCTATTCTAGTGCAAAGTTATCAGAGAGGATAATGAAGCTTCTCGAGGGCTGTGATGGCACTCCACCAGAAAGAGTCCAGCGGGCTGTTATACATGAATGCTGTAAGTGGAATCTATTGTGGGTTGGAAGAAATAGGGTTGCCCCACTTGAGCCTGATGAAGTGGAAATGCTCATGGGGTTTCCAAAGGATCACACAAGGGGAATGAGCCGCACTGATAGATACAAATCACTTGGCAATGCATTTCAGATTCACACTGTGGCATACCACTTCTCGGTCTTGCGGGACAAGTTTCCCAGTGGTATAAATGTCCTCTCTCTGTTCTCCGGGATAGGTGGAGCAGAAGTAGCCCTCCATCGTCTTGGGATCCATATGAAGAATGTGGTGTCCATAGAGATATCAGAAGTGAACAGAAACGTTGTGAGGTGTTGGTGGGAGCAAACAAACCAGACGGGAAATTTGATTCACCTTGCTGATGTAAAGGAGCTAGATGCTAACAGATTGGAACAGTTGATGTTTTCATTCGGCAGTTTTGATCTTGTAGTGGGTGGGAGCCCCTGCAATAATCTAACAGGCAGCAATAGATATCATCGAGATGGACTCGAGGGCAAAGAATCTTCACTTTTCTATCACTACTTTCGAATTCTGGACTTGGTCAAGTCTATTATGGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

577

Amino Acids

65.15

Weight (kDa)

5.53

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_methylase PF00145 455 - 569 3.5e-09 C-5 cytosine-specific DNA methylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 964
AciI CCGC 4 cut(s) 962, 1138, 1267, 1339
AclI AACGTT 1 cut(s) 1473
AclWI GGATC 4 cut(s) 605, 1254, 1417, 1430
AcsI RAATTY 4 cut(s) 759, 848, 1513, 1698
AdeI CACNNNGTG 1 cut(s) 1315
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 719, 1330
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 297, 578, 885
AluBI AGCT 8 cut(s) 116, 141, 146, 354, 384, 1039, 1096, 1543
AluI AGCT 8 cut(s) 116, 141, 146, 354, 384, 1039, 1096, 1543
Alw21I GWGCWC 3 cut(s) 126, 143, 606
Alw26I GTCTC 1 cut(s) 686
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 4 cut(s) 605, 1254, 1417, 1430
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 2 cut(s) 1100, 1658
AoxI GGCC 2 cut(s) 782, 1013
ApaLI GTGCAC 1 cut(s) 602
ApeKI GCWGC 4 cut(s) 536, 773, 902, 1632
ApoI RAATTY 4 cut(s) 759, 848, 1513, 1698
ArsI GACNNNNNNTTYG 2 cut(s) 1498, 1530
Asp700I GAANNNNTTC 2 cut(s) 13, 354
AspS9I GGNCC 1 cut(s) 782
AsuC2I CCSGG 1 cut(s) 1384
AsuHPI GGTGA 2 cut(s) 148, 1514
AsuII TTCGAA 1 cut(s) 1696
AvaI CYCGRG 2 cut(s) 1100, 1658
BaeGI GKGCMC 2 cut(s) 606, 675
BamHI GGATCC 1 cut(s) 1422
BanII GRGCYC 2 cut(s) 143, 1613
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 3 cut(s) 126, 143, 606
BbvI GCAGC 4 cut(s) 523, 785, 889, 1644
BccI CCATC 7 cut(s) 184, 202, 356, 661, 1106, 1419, 1646
BclI TGATCA 3 cut(s) 175, 325, 441
BcnI CCSGG 1 cut(s) 1384
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 6 cut(s) 18, 287, 359, 906, 1065, 1544
BisI GCNGC 5 cut(s) 537, 774, 903, 1267, 1633
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 5 cut(s) 538, 775, 904, 1268, 1634
Bme1390I CCNGG 1 cut(s) 1384
BmeT110I CYCGRG 2 cut(s) 1100, 1658
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 2 cut(s) 1424, 1610
BmrFI CCNGG 1 cut(s) 1384
BmrI ACTGGG 1 cut(s) 1347
BmsI GCATC 3 cut(s) 241, 550, 1537
BmuI ACTGGG 1 cut(s) 1347
BplI GAGNNNNNCTC 6 cut(s) 125, 157, 130, 162, 1641, 1673
BpmI CTGGAG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 1696
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 1 cut(s) 1384
BsaBI GATNNNNATC 2 cut(s) 324, 1282
BsaJI CCNNGG 2 cut(s) 336, 474
BsaXI ACNNNNNCTCC 4 cut(s) 687, 717, 1386, 1416
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 1330
Bse1I ACTGG 3 cut(s) 47, 742, 1353
Bse3DI GCAATG 1 cut(s) 1300
Bse8I GATNNNNATC 2 cut(s) 324, 1282
BseDI CCNNGG 2 cut(s) 336, 474
BseGI GGATG 3 cut(s) 10, 100, 195
BseJI GATNNNNATC 2 cut(s) 324, 1282
BseLI CCNNNNNNNGG 2 cut(s) 719, 1330
BseMI GCAATG 1 cut(s) 1300
BseMII CTCAG 5 cut(s) 156, 408, 681, 861, 930
BseNI ACTGG 3 cut(s) 47, 742, 1353
BseRI GAGGAG 5 cut(s) 260, 325, 434, 479, 493
BseSI GKGCMC 2 cut(s) 606, 675
BseXI GCAGC 4 cut(s) 523, 785, 889, 1644
BshFI GGCC 2 cut(s) 784, 1015
BsiHKAI GWGCWC 3 cut(s) 126, 143, 606
BsiHKCI CYCGRG 2 cut(s) 1100, 1658
BsiSI CCGG 1 cut(s) 1383
BslFI GGGAC 3 cut(s) 848, 1037, 1355
BslI CCNNNNNNNGG 2 cut(s) 719, 1330
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 3 cut(s) 848, 1037, 1355
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 2 cut(s) 784, 1015
BsoBI CYCGRG 2 cut(s) 1100, 1658
Bsp119I TTCGAA 1 cut(s) 1696
Bsp1286I GDGCHC 5 cut(s) 126, 143, 606, 675, 1613
Bsp143I GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
Bsp1720I GCTNAGC 1 cut(s) 142
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 4 cut(s) 962, 1138, 1267, 1339
BspANI GGCC 2 cut(s) 784, 1015
BspCNI CTCAG 5 cut(s) 155, 409, 682, 862, 931
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 1424, 1610
BspPI GGATC 4 cut(s) 605, 1254, 1417, 1430
BspT104I TTCGAA 1 cut(s) 1696
BsrBI CCGCTC 1 cut(s) 964
BsrDI GCAATG 1 cut(s) 1300
BsrI ACTGG 3 cut(s) 47, 742, 1353
BssECI CCNNGG 2 cut(s) 336, 474
BssMI GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 1046, 1315, 1566
Bst6I CTCTTC 3 cut(s) 456, 573, 617
BstBI TTCGAA 1 cut(s) 1696
BstC8I GCNNGC 1 cut(s) 1140
BstDEI CTNAG 7 cut(s) 142, 201, 417, 615, 690, 870, 939
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 10, 100, 195
BstKTI GATC 7 cut(s) 178, 328, 444, 613, 1249, 1425, 1594
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
BstMWI GCNNNNNNNGC 5 cut(s) 476, 545, 670, 1113, 1403
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 1382
BstSLI GKGCMC 2 cut(s) 606, 675
BstV1I GCAGC 4 cut(s) 523, 785, 889, 1644
BstX2I RGATCY 1 cut(s) 1422
BstXI CCANNNNNNTGG 1 cut(s) 1418
BstYI RGATCY 1 cut(s) 1422
BsuRI GGCC 2 cut(s) 784, 1015
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 3 cut(s) 10, 100, 195
BtsIMutI CAGTG 4 cut(s) 606, 1269, 1311, 1360
Cac8I GCNNGC 1 cut(s) 1140
CaiI CAGNNNCTG 1 cut(s) 689
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 1 cut(s) 454
CviAII CATG 8 cut(s) 233, 302, 475, 599, 744, 983, 1151, 1231
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 7 cut(s) 142, 201, 417, 615, 690, 870, 939
DpnI GATC 7 cut(s) 177, 327, 443, 612, 1248, 1424, 1593
DpnII GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
DraIII CACNNNGTG 1 cut(s) 1315
Eam1104I CTCTTC 3 cut(s) 456, 573, 617
EarI CTCTTC 3 cut(s) 456, 573, 617
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 2 cut(s) 143, 1613
Eco32I GATATC 2 cut(s) 1455, 1643
Eco53kI GAGCTC 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 1100, 1658
EcoICRI GAGCTC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 782
EcoRI GAATTC 2 cut(s) 759, 1698
EcoRV GATATC 2 cut(s) 1455, 1643
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 1300
EcoT38I GRGCYC 2 cut(s) 143, 1613
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 8 cut(s) 236, 305, 478, 602, 747, 986, 1154, 1234
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 3 cut(s) 848, 1037, 1355
FatI CATG 8 cut(s) 232, 301, 474, 598, 743, 982, 1150, 1230
FauI CCCGC 2 cut(s) 1131, 1332
FauNDI CATATG 1 cut(s) 1428
FbaI TGATCA 3 cut(s) 175, 325, 441
Fnu4HI GCNGC 5 cut(s) 537, 774, 903, 1267, 1633
FokI GGATG 3 cut(s) 17, 87, 202
FriOI GRGCYC 2 cut(s) 143, 1613
Fsp4HI GCNGC 5 cut(s) 537, 774, 903, 1267, 1633
FspBI CTAG 6 cut(s) 18, 287, 359, 906, 1065, 1544
GluI GCNGC 5 cut(s) 537, 774, 903, 1267, 1633
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 2 cut(s) 784, 1015
HapII CCGG 1 cut(s) 1383
Hin1II CATG 8 cut(s) 236, 305, 478, 602, 747, 986, 1154, 1234
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 2 cut(s) 352, 1094
HinfI GANTC 9 cut(s) 320, 730, 881, 1131, 1168, 1306, 1519, 1656, 1670
HpaII CCGG 1 cut(s) 1383
HphI GGTGA 2 cut(s) 148, 1514
Hpy166II GTNNAC 4 cut(s) 40, 456, 604, 1465
Hpy188I TCNGA 9 cut(s) 228, 325, 340, 373, 418, 643, 1081, 1305, 1459
Hpy188III TCNNGA 9 cut(s) 173, 287, 302, 359, 512, 575, 1100, 1649, 1703
Hpy8I GTNNAC 4 cut(s) 40, 456, 604, 1465
HpyAV CCTTC 3 cut(s) 93, 575, 1026
HpyCH4III ACNGT 3 cut(s) 1046, 1315, 1566
HpyCH4IV ACGT 2 cut(s) 921, 1473
HpyCH4V TGCA 6 cut(s) 221, 254, 604, 1070, 1298, 1617
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 545, 670, 1113, 1403
HpyF3I CTNAG 7 cut(s) 142, 201, 417, 615, 690, 870, 939
HpySE526I ACGT 2 cut(s) 921, 1473
Hsp92II CATG 8 cut(s) 236, 305, 478, 602, 747, 986, 1154, 1234
Ksp22I TGATCA 3 cut(s) 175, 325, 441
Kzo9I GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
LmnI GCTCC 8 cut(s) 151, 273, 740, 969, 1394, 1492, 1540, 1608
Lsp1109I GCAGC 4 cut(s) 523, 785, 889, 1644
LweI GCATC 3 cut(s) 241, 550, 1537
MaeI CTAG 6 cut(s) 18, 287, 359, 906, 1065, 1544
MaeII ACGT 2 cut(s) 921, 1473
MaeIII GTNAC 2 cut(s) 917, 1051
MalI GATC 7 cut(s) 177, 327, 443, 612, 1248, 1424, 1593
MbiI CCGCTC 1 cut(s) 964
MboI GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 1422
MhlI GDGCHC 5 cut(s) 126, 143, 606, 675, 1613
MlyI GAGTC 2 cut(s) 1140, 1650
MmeI TCCRAC 2 cut(s) 758, 1162
Mph1103I ATGCAT 1 cut(s) 1300
MroXI GAANNNNTTC 2 cut(s) 13, 354
MslI CAYNNNNRTG 2 cut(s) 105, 1650
MspA1I CMGCKG 1 cut(s) 1138
MspI CCGG 1 cut(s) 1383
MspR9I CCNGG 1 cut(s) 1384
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 1160
MwoI GCNNNNNNNGC 5 cut(s) 476, 545, 670, 1113, 1403
NciI CCSGG 1 cut(s) 1384
NcoI CCATGG 1 cut(s) 474
NdeI CATATG 1 cut(s) 1428
NdeII GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
NlaIII CATG 8 cut(s) 236, 305, 478, 602, 747, 986, 1154, 1234
NlaIV GGNNCC 2 cut(s) 1424, 1610
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 1 cut(s) 602
NspV TTCGAA 1 cut(s) 1696
PaeR7I CTCGAG 2 cut(s) 1100, 1658
PagI TCATGA 1 cut(s) 301
PciI ACATGT 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PctI GAATGC 1 cut(s) 1160
PdmI GAANNNNTTC 2 cut(s) 13, 354
PfeI GAWTC 7 cut(s) 320, 730, 881, 1168, 1306, 1519, 1670
PflFI GACNNNGTC 1 cut(s) 1709
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 1382
PkrI GCNGC 5 cut(s) 538, 775, 904, 1268, 1634
PleI GAGTC 2 cut(s) 1139, 1650
PpsI GAGTC 2 cut(s) 1139, 1650
PscI ACATGT 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 143
Psp1406I AACGTT 1 cut(s) 1473
PspN4I GGNNCC 2 cut(s) 1424, 1610
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 1658
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 1 cut(s) 1422
PsyI GACNNNGTC 1 cut(s) 1709
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 105, 1650
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 5 cut(s) 537, 774, 903, 1267, 1633
Sau3AI GATC 7 cut(s) 175, 325, 441, 610, 1246, 1422, 1591
Sau96I GGNCC 1 cut(s) 782
SchI GAGTC 2 cut(s) 1140, 1650
ScrFI CCNGG 1 cut(s) 1384
SduI GDGCHC 5 cut(s) 126, 143, 606, 675, 1613
SfaNI GCATC 3 cut(s) 241, 550, 1537
Sfr274I CTCGAG 2 cut(s) 1100, 1658
SfuI TTCGAA 1 cut(s) 1696
SlaI CTCGAG 2 cut(s) 1100, 1658
SmiMI CAYNNNNRTG 2 cut(s) 105, 1650
SmlI CTYRAG 3 cut(s) 1100, 1205, 1658
SmoI CTYRAG 3 cut(s) 1100, 1205, 1658
SsiI CCGC 4 cut(s) 962, 1138, 1267, 1339
SspMI CTAG 6 cut(s) 18, 287, 359, 906, 1065, 1544
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 1382
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 1046, 1315, 1566
TaiI ACGT 2 cut(s) 924, 1476
TaqI TCGA 7 cut(s) 63, 89, 650, 1101, 1648, 1659, 1696
TaqII GACCGA 1 cut(s) 1321
TauI GCSGC 1 cut(s) 1269
TfiI GAWTC 7 cut(s) 320, 730, 881, 1168, 1306, 1519, 1670
TscAI CASTG 4 cut(s) 613, 1276, 1318, 1360
TseI GCWGC 4 cut(s) 536, 773, 902, 1632
TspDTI ATGAA 7 cut(s) 72, 318, 1106, 1167, 1230, 1445, 1566
TspRI CASTG 4 cut(s) 613, 1276, 1318, 1360
Tth111I GACNNNGTC 1 cut(s) 1709
Van91I CCANNNNNTGG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 602
XapI RAATTY 4 cut(s) 759, 848, 1513, 1698
XbaI TCTAGA 2 cut(s) 286, 358
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XhoI CTCGAG 2 cut(s) 1100, 1658
XmnI GAANNNNTTC 2 cut(s) 13, 354
XspI CTAG 6 cut(s) 18, 287, 359, 906, 1065, 1544
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.