Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004340.1

Orthogroup ID

OG0006298

Physical Location & Seq

Genomic Coordinates Reverse (-)

34106 .. 36263

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004340.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggcgtccaaaaccctaattcgaaccggagcttctctgatgaaccggttcctatcaaaaccactgctccacccgaacccgaattcgactcaccagaaccagattgtatcccacgccctcgaaatcactcccaagctattcccctctctctccaacttcgacacctccctccgttttccccaaaacgacgccgcatcgatcacaagggtcttcaatgagggcttcgtgcacccttgcggcctcccttatctccccctcatcttacccgaaggagatgactcttcatctaatgagccaatgatattatttccgaagcggacattccagcctagtactatcaggcgtaagaggaaccatggcttttttgctcgcaaagcaaccaagggtggacggagagtaattgctcgaagaatagcaaagggtcgagcaagaattacagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

11.59

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13882 AT3G13882
fragaria_vesca	FvH4_6g33800
malus_domestica	MD09G1191200.v1.1 MD17G1173900.v1.1
prunus_persica	Prupe.3G047000_v2.0.a1 Prupe.3G047000_v2.0.a1
pyrus_communis	pycom07g10260 pycom09g10750
rosa_chinensis	RchiOBHm_Chr2g0143671 RchiOBHm_Chr5g0063721
rosa_laevigata	RLG00000020058 RLG00000035662
rosa_multiflora	Rmu_sc0004340.1_g000010 Rmu_sc0016065.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017130 Rroxscaffold_2G00101550
rosa_rugosa	Rorug02G0384600 Rorug05G0358800
rosa_samantha	Rh2AG436700 Rh2BG444300 Rh2CG423000 Rh2DG454600 Rh5BG433100 Rh5CG456300
rosa_wichuraiana	Rw2G035590 Rw5G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	192, 237, 316
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	2 cut(s)	5, 189
AfaI	GTAC	1 cut(s)	334
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	3 cut(s)	32, 136, 440
AluI	AGCT	3 cut(s)	32, 136, 440
Alw21I	GWGCWC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	2 cut(s)	192, 238
BlsI	GCNGC	2 cut(s)	193, 239
BmcAI	AGTACT	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	50, 353
BmsI	GCATC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	5, 189
BsaJI	CCNNGG	2 cut(s)	355, 381
BsaWI	WCCGGW	2 cut(s)	26, 45
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	355, 381
BseSI	GKGCMC	1 cut(s)	231
BshFI	GGCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	27, 46
BsnI	GGCC	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	192, 237, 316
BspANI	GGCC	1 cut(s)	240
BspDI	ATCGAT	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	50, 353
BspT104I	TTCGAA	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	355, 381
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	2 cut(s)	5, 189
BssT1I	CCWWGG	2 cut(s)	355, 381
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	2 cut(s)	5, 189
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	333
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	8 cut(s)	32, 136, 222, 240, 295, 328, 360, 440
CviKI_1	RGCY	8 cut(s)	32, 136, 222, 240, 295, 328, 360, 440
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	355, 381
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	355, 381
ErhI	CCWWGG	2 cut(s)	355, 381
FaeI	CATG	1 cut(s)	359
FaiI	YATR	1 cut(s)	357
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	192, 238
Fsp4HI	GCNGC	2 cut(s)	192, 238
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	192, 238
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	27, 46
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	5, 189
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	2 cut(s)	88, 278
HpaII	CCGG	2 cut(s)	27, 46
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	229, 389
Hpy188I	TCNGA	2 cut(s)	39, 312
Hpy8I	GTNNAC	2 cut(s)	229, 389
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	441
Hsp92I	GRCGYC	2 cut(s)	5, 189
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	29, 72
LpnPI	CCDG	6 cut(s)	40, 59, 107, 113, 325, 338
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	330
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	202, 273, 420
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	18, 82, 399, 432
MlyI	GAGTC	2 cut(s)	82, 272
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	128, 154, 175, 179, 211, 251, 266, 342
MroXI	GAANNNNTTC	1 cut(s)	47
MspI	CCGG	2 cut(s)	27, 46
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	50, 353
NspV	TTCGAA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	47
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	193, 239
PleI	GAGTC	2 cut(s)	82, 272
PpsI	GAGTC	2 cut(s)	82, 272
PspN4I	GGNNCC	2 cut(s)	50, 353
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SatI	GCNGC	2 cut(s)	192, 238
Sau3AI	GATC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	2 cut(s)	82, 272
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	34, 138, 167, 442
SfaNI	GCATC	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	22
Sse9I	AATT	4 cut(s)	18, 82, 399, 432
SsiI	CCGC	3 cut(s)	192, 237, 316
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	355, 381
TaqI	TCGA	7 cut(s)	22, 86, 120, 159, 197, 406, 424
TasI	AATT	4 cut(s)	18, 82, 399, 432
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	2 cut(s)	194, 240
TscAI	CASTG	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	56, 273
TspGWI	ACGGA	2 cut(s)	161, 406
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.