Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006298

Physical Location & Seq

Genomic Coordinates Reverse (-)

8822154 .. 8824044

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGTCCAAAACCCTAATTCGAACCGGAGCTTCCCTCGTGAACCGGTTCCTATCCAAGCCATTGCTACACCCGAACCCGAATCCGAATCGCCAGATTGTATCTCACGGCCTCGGAATCACTCCCAAGCTGTTCCCGTCTCTCTCCCACTTCGACACCTCCCTCCATTTTCCCCAAAACGATGCCGAATCGCTGAAACGGGTCTCCTCTGAAGGGTTTTGGTACCCCTGCGGCCTCCCTTATCTTCCGTTCTACTTACCTGACGGAGATGAATCTTCATCAACAGAGCCAATGCTATTATTTCCAAAGCGAACCTTCCAGCCTAGTACCATCCGGCGGAAGAGGAACCATGGATTTTTTGCTCGCAAGGCAACCAAGGGTGGACGAAGAGTAATAGCTAGAAGAATAGCAAAGGGTCGAGCAAGGGTCACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34

Protein Analysis

146

Amino Acids

16.33

Weight (kDa)

11.31

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13882 AT3G13882
fragaria_vesca	FvH4_6g33800
malus_domestica	MD09G1191200.v1.1 MD17G1173900.v1.1
prunus_persica	Prupe.3G047000_v2.0.a1 Prupe.3G047000_v2.0.a1
pyrus_communis	pycom07g10260 pycom09g10750
rosa_chinensis	RchiOBHm_Chr2g0143671 RchiOBHm_Chr5g0063721
rosa_laevigata	RLG00000020058 RLG00000035662
rosa_multiflora	Rmu_sc0004340.1_g000010 Rmu_sc0016065.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017130 Rroxscaffold_2G00101550
rosa_rugosa	Rorug02G0384600 Rorug05G0358800
rosa_samantha	Rh2AG436700 Rh2BG444300 Rh2CG423000 Rh2DG454600 Rh5BG433100 Rh5CG456300
rosa_wichuraiana	Rw2G035590 Rw5G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	2 cut(s)	231, 337
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	224, 328
AfiI	CCNNNNNNNGG	2 cut(s)	213, 336
AgeI	ACCGGT	1 cut(s)	45
AluBI	AGCT	4 cut(s)	32, 130, 398, 434
AluI	AGCT	4 cut(s)	32, 130, 398, 434
Alw26I	GTCTC	2 cut(s)	144, 208
AoxI	GGCC	2 cut(s)	109, 232
AsiGI	ACCGGT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	222
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	38
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	144, 208
BfaI	CTAG	2 cut(s)	324, 399
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	50, 224, 347
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
Bpu14I	TTCGAA	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	112, 349, 375
BsaWI	WCCGGW	2 cut(s)	26, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 336
Bse118I	RCCGGY	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	112, 349, 375
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	213, 336
BseMI	GCAATG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	111, 234
BshNI	GGYRCC	1 cut(s)	222
BshTI	ACCGGT	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	27, 46, 334
BslI	CCNNNNNNNGG	2 cut(s)	213, 336
BsmAI	GTCTC	2 cut(s)	144, 208
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	111, 234
Bso31I	GGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	2 cut(s)	231, 337
BspANI	GGCC	2 cut(s)	111, 234
BspLI	GGNNCC	3 cut(s)	50, 224, 347
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	112, 349, 375
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	349, 375
Bst2BI	CACGAG	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	335, 382
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	330
BstMAI	GTCTC	2 cut(s)	144, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	111, 234
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	223, 327
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	32, 61, 111, 130, 234, 289, 322, 398, 434
CviKI_1	RGCY	9 cut(s)	32, 61, 111, 130, 234, 289, 322, 398, 434
CviQI	GTAC	2 cut(s)	223, 327
Eam1104I	CTCTTC	2 cut(s)	335, 382
EarI	CTCTTC	2 cut(s)	335, 382
EciI	GGCGGA	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	349, 375
Eco31I	GGTCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	349, 375
ErhI	CCWWGG	2 cut(s)	349, 375
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	353
FaiI	YATR	1 cut(s)	351
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	2 cut(s)	324, 399
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	111, 234
HapII	CCGG	3 cut(s)	27, 46, 334
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	5 cut(s)	82, 88, 117, 188, 272
HpaII	CCGG	3 cut(s)	27, 46, 334
Hpy166II	GTNNAC	2 cut(s)	43, 383
Hpy188I	TCNGA	3 cut(s)	87, 116, 211
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	43, 383
HpyAV	CCTTC	2 cut(s)	206, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	40, 59, 107, 241, 273, 332, 347
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	324, 399
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	5 cut(s)	236, 267, 352, 399, 414
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	7 cut(s)	47, 122, 169, 173, 217, 245, 336
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	436
MspI	CCGG	3 cut(s)	27, 46, 334
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	3 cut(s)	50, 224, 347
NmuCI	GTSAC	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	5 cut(s)	82, 88, 117, 188, 272
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	233
PspN4I	GGNNCC	3 cut(s)	50, 224, 347
RsaI	GTAC	2 cut(s)	224, 328
RsaNI	GTAC	2 cut(s)	223, 327
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	1 cut(s)	232
SetI	ASST	7 cut(s)	34, 132, 161, 262, 317, 400, 436
SfaNI	GCATC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	22
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	231, 337
SspMI	CTAG	2 cut(s)	324, 399
StyI	CCWWGG	2 cut(s)	349, 375
TaqI	TCGA	3 cut(s)	22, 153, 418
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	5 cut(s)	82, 88, 117, 188, 272
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	267, 285
TspGWI	ACGGA	2 cut(s)	237, 279
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	324, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.