AT3G13882

Ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006298
Physical Location & Seq
Forward (+)
4574521 .. 4576107
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13882.2

Sequence Viewer

Length: 444 bp
ATGGCGGCCAAAACCCTAATCAGGTCAGGAGCTTCGTTGATGAATCGGTTTCTAACGAAGCCGACAACGAATATCGTGCAGAACAATCTCAGATCTTCTTTTCAATACATAGCTCCTCAGGGACAAGAAATCCCGCCGTATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACTGCTTCGCTCCAGGAACTCAACGAACGTGGATTTCTTTACCCTTCTGGTCTTCCTTCACTCGAATTCTTCTTGCCAGAAGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCACTATAAGGCGTAAACGGAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAGAGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

11.56

Isoelectric Point (pI)

72.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 159 - 201 3.1e-18 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 184
AciI CCGC 2 cut(s) 5, 134
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 104, 288
AhdI GACNNNNNGTC 1 cut(s) 395
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 4 cut(s) 32, 113, 171, 404
AluI AGCT 4 cut(s) 32, 113, 171, 404
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 117
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 209
BfaI CTAG 1 cut(s) 442
BfmI CTRYAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 103, 131
BseRI GAGGAG 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 173
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 92, 280
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 5, 134
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 102, 130
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 92, 280
BssNI GRCGYC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 424
BstDEI CTNAG 3 cut(s) 89, 117, 312
BstDSI CCRYGG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 95, 283
BstMBI GATC 2 cut(s) 92, 280
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 186
CseI GACGC 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 356
CviJI RGCY 8 cut(s) 8, 32, 61, 113, 171, 295, 404, 440
CviKI_1 RGCY 8 cut(s) 8, 32, 61, 113, 171, 295, 404, 440
DdeI CTNAG 3 cut(s) 89, 117, 312
DpnI GATC 2 cut(s) 94, 282
DpnII GATC 2 cut(s) 92, 280
DriI GACNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 359
FaiI YATR 4 cut(s) 110, 338, 357, 401
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 355
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 442
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 5 cut(s) 43, 160, 360, 396, 432
Hpy166II GTNNAC 2 cut(s) 347, 389
Hpy188I TCNGA 3 cut(s) 92, 372, 408
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 347, 389
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 4 cut(s) 249, 261, 294, 367
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 3 cut(s) 89, 117, 312
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 92, 280
LmnI GCTCC 3 cut(s) 29, 118, 210
LpnPI CCDG 7 cut(s) 7, 12, 104, 194, 221, 228, 285
MaeI CTAG 1 cut(s) 442
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 425, 433
MalI GATC 2 cut(s) 94, 282
MboI GATC 2 cut(s) 92, 280
MboII GAAGA 3 cut(s) 87, 239, 256
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 260
MlyI GAGTC 2 cut(s) 405, 441
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 126, 309
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 355
NdeII GATC 2 cut(s) 92, 280
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 2 cut(s) 425, 433
PfeI GAWTC 3 cut(s) 43, 160, 360
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 404, 440
PpsI GAGTC 2 cut(s) 404, 440
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 92
SacI GAGCTC 1 cut(s) 173
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 92, 280
SchI GAGTC 2 cut(s) 405, 441
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 173
SetI ASST 7 cut(s) 26, 34, 115, 173, 226, 388, 406
SfcI CTRYAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 260
SsiI CCGC 2 cut(s) 5, 134
SspMI CTAG 1 cut(s) 442
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 355
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 158, 258
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 43, 160, 360
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 425, 433
Tsp45I GTSAC 2 cut(s) 425, 433
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 2 cut(s) 364, 406
TspRI CASTG 1 cut(s) 202
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.