Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006298

Physical Location & Seq

Genomic Coordinates Forward (+)

10112807 .. 10115064

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGTCCAAAACCCTAATTCGAACCGGAGCTTCCCTCGTAAAACGGTTCCTATCCAAGCCATTGCTTCCCCCGAACCCGAATCCGAATGGCCATATTGTCTCTCACGGCCTCGAAATCACTCCCAAGATGTTCCCGTCTCTCTCCCACTTCGACACCTACCTCCGTTTGCCCCAAAACGACGCCGAATCGCTTAGACGGGTCTCCTCTGAAGGGTTTTTGTACCCCTGCGGCCTCCCTTATCTCCCGTTCTACTTACCTGACGGAGATGATTCTTCATCAACAGAGCCAATCCTATTATTTCCAAAGCGAACGTTCCAGCCCAGTACCATCCGGCGGAAGAGGAACCATGGATTTTTTGCTCGCAAGGCAACCAAGGGTGGACGGAGAGTAATTGCTAGAAGAATAGCCAAAAGTCGAGCAAGAGTTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

11.13

Isoelectric Point (pI)

70.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13882 AT3G13882
fragaria_vesca	FvH4_6g33800
malus_domestica	MD09G1191200.v1.1 MD17G1173900.v1.1
prunus_persica	Prupe.3G047000_v2.0.a1 Prupe.3G047000_v2.0.a1
pyrus_communis	pycom07g10260 pycom09g10750
rosa_chinensis	RchiOBHm_Chr2g0143671 RchiOBHm_Chr5g0063721
rosa_laevigata	RLG00000020058 RLG00000035662
rosa_multiflora	Rmu_sc0004340.1_g000010 Rmu_sc0016065.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017130 Rroxscaffold_2G00101550
rosa_rugosa	Rorug02G0384600 Rorug05G0358800
rosa_samantha	Rh2AG436700 Rh2BG444300 Rh2CG423000 Rh2DG454600 Rh5BG433100 Rh5CG456300
rosa_wichuraiana	Rw2G035590 Rw5G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 337
AclI	AACGTT	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	2 cut(s)	5, 183
AfaI	GTAC	2 cut(s)	224, 328
AfiI	CCNNNNNNNGG	2 cut(s)	213, 336
AluBI	AGCT	2 cut(s)	32, 434
AluI	AGCT	2 cut(s)	32, 434
Alw26I	GTCTC	3 cut(s)	106, 144, 208
AoxI	GGCC	3 cut(s)	91, 109, 232
AsuII	TTCGAA	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	93
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	3 cut(s)	106, 144, 208
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	50, 347
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
Bpu14I	TTCGAA	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	5, 183
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	349, 375
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 336
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	349, 375
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	213, 336
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	93, 111, 234
BsiSI	CCGG	2 cut(s)	27, 334
BslI	CCNNNNNNNGG	2 cut(s)	213, 336
BsmAI	GTCTC	3 cut(s)	106, 144, 208
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	93, 111, 234
Bso31I	GGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	2 cut(s)	231, 337
BspANI	GGCC	3 cut(s)	93, 111, 234
BspLI	GGNNCC	2 cut(s)	50, 347
BspT104I	TTCGAA	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	349, 375
BssNI	GRCGYC	2 cut(s)	5, 183
BssT1I	CCWWGG	2 cut(s)	349, 375
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	2 cut(s)	5, 183
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	330
BstMAI	GTCTC	3 cut(s)	106, 144, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	93, 111, 234
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	364
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	223, 327
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	32, 61, 93, 111, 234, 289, 322, 410, 434
CviKI_1	RGCY	9 cut(s)	32, 61, 93, 111, 234, 289, 322, 410, 434
CviQI	GTAC	2 cut(s)	223, 327
DdeI	CTNAG	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	349, 375
Eco31I	GGTCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	349, 375
ErhI	CCWWGG	2 cut(s)	349, 375
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	353
FaiI	YATR	2 cut(s)	96, 351
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	93, 111, 234
HapII	CCGG	2 cut(s)	27, 334
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	5, 183
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	3 cut(s)	82, 188, 272
HpaII	CCGG	2 cut(s)	27, 334
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	87, 211
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	2 cut(s)	5, 183
Hsp92II	CATG	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	40, 241, 273, 332, 337, 347
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	267, 352, 414
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	18, 393
MluNI	TGGCCA	1 cut(s)	93
MnlI	CCTC	6 cut(s)	47, 122, 173, 217, 245, 336
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	2 cut(s)	27, 334
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	50, 347
NspV	TTCGAA	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	82, 188, 272
PkrI	GCNGC	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	50, 347
RsaI	GTAC	2 cut(s)	224, 328
RsaNI	GTAC	2 cut(s)	223, 327
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	1 cut(s)	232
SetI	ASST	6 cut(s)	34, 161, 165, 262, 317, 436
SfuI	TTCGAA	1 cut(s)	22
Sse9I	AATT	2 cut(s)	18, 393
SsiI	CCGC	2 cut(s)	231, 337
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	349, 375
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	4 cut(s)	22, 114, 153, 418
TasI	AATT	2 cut(s)	18, 393
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	82, 188, 272
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	3 cut(s)	155, 279, 400
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.