Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006298

Physical Location & Seq

Genomic Coordinates Reverse (-)

3340570 .. 3349065

Gene Structure 8496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGTCCAAAACCCTAATTCGAACTGGAGCTTCCCTAATGAACCGGATCTTATCCAAACCATTGCTACACCCGAACCCGAATTCGAATCACCAGATTGTATCTCACGGCCTCGAAATCACTCCCAAGCTATTCCCATCTCTTTCAAACTTCGACACCTCCTTCCGTTTGCCCCAAAACGACGCCGAATCGCTGAAACGGGTCTCCTATGAAGGGCTCGTGTACCCTTTTGGCCTCCCTTATCTCCCGTTCTTCTTACCTGACGGAGATGATTCTTCATCATCAGAGCCAATGCTATTATTTCCAAAGCGGACGTTCCAGCCTAGTACCATCCGACGCAAGAGGAACCATGGATTTTTTGCTCGCAAGGCAACCAAGGGTGGACGGAGAGTAATTGCTAGAAGAATAGCGAAGGGTCGATCAAGAGTTACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34

Protein Analysis

146

Amino Acids

16.34

Weight (kDa)

11.31

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13882 AT3G13882
fragaria_vesca	FvH4_6g33800
malus_domestica	MD09G1191200.v1.1 MD17G1173900.v1.1
prunus_persica	Prupe.3G047000_v2.0.a1 Prupe.3G047000_v2.0.a1
pyrus_communis	pycom07g10260 pycom09g10750
rosa_chinensis	RchiOBHm_Chr2g0143671 RchiOBHm_Chr5g0063721
rosa_laevigata	RLG00000020058 RLG00000035662
rosa_multiflora	Rmu_sc0004340.1_g000010 Rmu_sc0016065.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017130 Rroxscaffold_2G00101550
rosa_rugosa	Rorug02G0384600 Rorug05G0358800
rosa_samantha	Rh2AG436700 Rh2BG444300 Rh2CG423000 Rh2DG454600 Rh5BG433100 Rh5CG456300
rosa_wichuraiana	Rw2G035590 Rw5G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	2 cut(s)	5, 183
AfaI	GTAC	2 cut(s)	224, 328
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	147
AluBI	AGCT	3 cut(s)	32, 130, 434
AluI	AGCT	3 cut(s)	32, 130, 434
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	109, 232
ApoI	RAATTY	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	83
AsuII	TTCGAA	2 cut(s)	22, 86
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	218
BccI	CCATC	2 cut(s)	145, 338
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	324, 399
BmiI	GGNNCC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	48
Bpu14I	TTCGAA	2 cut(s)	22, 86
BsaHI	GRCGYC	2 cut(s)	5, 183
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	349, 375
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	349, 375
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	111, 234
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	111, 234
Bso31I	GGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	2 cut(s)	22, 86
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	48, 419
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	2 cut(s)	111, 234
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	56
BspT104I	TTCGAA	2 cut(s)	22, 86
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	349, 375
BssMI	GATC	2 cut(s)	48, 419
BssNI	GRCGYC	2 cut(s)	5, 183
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	349, 375
Bst2BI	CACGAG	1 cut(s)	218
BstACI	GRCGYC	2 cut(s)	5, 183
BstBI	TTCGAA	2 cut(s)	22, 86
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	51, 422
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	48, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	111, 234
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	364
CseI	GACGC	2 cut(s)	191, 345
Csp6I	GTAC	2 cut(s)	223, 327
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	32, 111, 130, 217, 234, 289, 322, 434
CviKI_1	RGCY	8 cut(s)	32, 111, 130, 217, 234, 289, 322, 434
CviQI	GTAC	2 cut(s)	223, 327
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	50, 421
DpnII	GATC	2 cut(s)	48, 419
Eco130I	CCWWGG	2 cut(s)	349, 375
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	349, 375
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	349, 375
FaeI	CATG	1 cut(s)	353
FaiI	YATR	2 cut(s)	210, 351
FatI	CATG	1 cut(s)	349
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	324, 399
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	111, 234
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	2 cut(s)	191, 345
Hin1I	GRCGYC	2 cut(s)	5, 183
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	3 cut(s)	88, 188, 272
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	223, 383
Hpy188I	TCNGA	2 cut(s)	286, 335
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	2 cut(s)	223, 383
Hpy99I	CGWCG	2 cut(s)	185, 339
HpyAV	CCTTC	3 cut(s)	172, 206, 406
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	2 cut(s)	5, 183
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	48, 419
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	5 cut(s)	12, 59, 107, 273, 332
MaeI	CTAG	2 cut(s)	324, 399
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	50, 421
MboI	GATC	2 cut(s)	48, 419
MboII	GAAGA	3 cut(s)	244, 267, 414
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	18, 82, 393
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	122, 169, 245, 336
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	48, 419
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	347
NspV	TTCGAA	2 cut(s)	22, 86
PfeI	GAWTC	3 cut(s)	88, 188, 272
PspN4I	GGNNCC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	2 cut(s)	224, 328
RsaNI	GTAC	2 cut(s)	223, 327
Sau3AI	GATC	2 cut(s)	48, 419
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	34, 132, 161, 262, 317, 436
SfuI	TTCGAA	2 cut(s)	22, 86
Sse9I	AATT	3 cut(s)	18, 82, 393
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	324, 399
StyI	CCWWGG	2 cut(s)	349, 375
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	5 cut(s)	22, 86, 114, 153, 418
TasI	AATT	3 cut(s)	18, 82, 393
TfiI	GAWTC	3 cut(s)	88, 188, 272
TspDTI	ATGAA	3 cut(s)	56, 225, 267
TspGWI	ACGGA	3 cut(s)	155, 279, 400
XapI	RAATTY	1 cut(s)	82
XspI	CTAG	2 cut(s)	324, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.