RLG00000035662

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006298
Physical Location & Seq
Reverse (-)
69942290 .. 69944155
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035662

Sequence Viewer

Length: 444 bp
ATGGCGTCAAAAACTCTAATTCGAACCGGAGCTTCTCTGATGAACCGGTTCCTATCAAAACCATTTCTGCACCAGAACCCGAACCCTAATGCGAATTACCAGATTGTATCCCACGGCCTCGAAATCACTCCCAAGCTATTCCCATCTCTCTCCAACTTGGATACCTCCCTCCGTTTCCCCCAAAACGACACCGAATCGATTACAAGGGTCTTCAATGAGAGCTTCGTGCACCCTTGCGGCCTCCCTTATCTCCCGCTCATCTTACCTGAAGGAGACGAATCTTCATCAAATGAGCCAATGATATTATTTCCGAAGCGGACATTCCAGCCTAGTACCATCAGGCGTAAGAGGAACCATGGATTTTTTGCTCGCAAGGCAACAAAGGGTGGACGGAGAGTAATTGCTAGAAGAATAGCAAAGGGTCGTGCAAGGATTACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

148

Amino Acids

16.62

Weight (kDa)

11.3

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 105 - 147 2.2e-18 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 3 cut(s) 237, 254, 316
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 334
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 4 cut(s) 32, 136, 222, 440
AluI AGCT 4 cut(s) 32, 136, 222, 440
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 267
Alw44I GTGCAC 1 cut(s) 227
AoxI GGCC 2 cut(s) 115, 238
ApaLI GTGCAC 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 2 cut(s) 151, 344
BceAI ACGGC 1 cut(s) 130
BciVI GTATCC 2 cut(s) 118, 154
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 2 cut(s) 330, 405
BfuI GTATCC 2 cut(s) 118, 154
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 50, 353
BpiI GAAGAC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 22
Bsa29I ATCGAT 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 112, 355
BsaWI WCCGGW 2 cut(s) 26, 45
Bse118I RCCGGY 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 112, 355
BseSI GKGCMC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 2 cut(s) 117, 240
BshTI ACCGGT 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 27, 46
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 117, 240
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 3 cut(s) 237, 254, 316
BspANI GGCC 2 cut(s) 117, 240
BspDI ATCGAT 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 50, 353
BspT104I TTCGAA 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 112, 355
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 355
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 2 cut(s) 112, 355
BstMAI GTCTC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 197
BsuI GTATCC 2 cut(s) 118, 154
BsuRI GGCC 2 cut(s) 117, 240
BsuTUI ATCGAT 1 cut(s) 197
BtgI CCRYGG 2 cut(s) 112, 355
Cac8I GCNNGC 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 197
Csp6I GTAC 1 cut(s) 333
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 1 cut(s) 356
CviJI RGCY 8 cut(s) 32, 117, 136, 222, 240, 295, 328, 440
CviKI_1 RGCY 8 cut(s) 32, 117, 136, 222, 240, 295, 328, 440
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 359
FaiI YATR 1 cut(s) 357
FatI CATG 1 cut(s) 355
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 330, 405
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 117, 240
HapII CCGG 2 cut(s) 27, 46
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 359
HinfI GANTC 2 cut(s) 194, 278
HpaII CCGG 2 cut(s) 27, 46
Hpy166II GTNNAC 2 cut(s) 229, 389
Hpy188I TCNGA 2 cut(s) 39, 312
Hpy8I GTNNAC 2 cut(s) 229, 389
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 70, 229, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 359
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 40, 59, 86, 113, 279, 325, 338
MaeI CTAG 2 cut(s) 330, 405
MbiI CCGCTC 1 cut(s) 256
MboII GAAGA 3 cut(s) 202, 273, 420
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 18, 94, 399
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 5 cut(s) 128, 175, 179, 251, 342
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 2 cut(s) 27, 46
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 355
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 50, 353
NspV TTCGAA 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 194, 278
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 50, 353
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SatI GCNGC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 34, 138, 167, 224, 268, 442
SfuI TTCGAA 1 cut(s) 22
Sse9I AATT 3 cut(s) 18, 94, 399
SsiI CCGC 3 cut(s) 237, 254, 316
SspMI CTAG 2 cut(s) 330, 405
StyI CCWWGG 1 cut(s) 355
TaqI TCGA 3 cut(s) 22, 120, 197
TasI AATT 3 cut(s) 18, 94, 399
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 194, 278
TspDTI ATGAA 2 cut(s) 56, 273
TspGWI ACGGA 2 cut(s) 161, 406
VneI GTGCAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 330, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.