Rh5BG433100

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006298
Physical Location & Seq
Forward (+)
69722700 .. 69724668
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG433100.1

Sequence Viewer

Length: 438 bp
ATGGCTTCAAAAACTCTAATTCGAACCGGAGCTTTTCTGATGAACCGGTTCCTATCAAAACCCTTGCTCCACCCGAACCCGAATTCGAATCACCAGATTGTATCCCACGCCCTCGAAATCACTCCCAAGCTATTCCCGTCTCTCTCCAACTTGGACACCTCCCTCCGTTTCCCCCAAAACGACACCGAATCGATTACAAGGGTCTTCAATGACAGCTTCGTGCACCCTTGCGGCCTCCCTCATCTCCCGCTCATCTTACCTGAAGGAGATGAATCTTCATCAAATGAGCCAATGATATTATTTCCGAAGCGGACATTCCAGCCTAGTACCATCAGGCGTAAGAGGAACCATGGATTTTTTGCTCGCAAGGCAACAAAGGGCGGGCGGAGGGTAATTGCTCGAAGAATAGCAAAGGGTCGTGCAAGAATTACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

11.59

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 103 - 145 2.1e-18 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 250
AciI CCGC 5 cut(s) 231, 248, 310, 381, 385
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 328
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 9, 208
AluBI AGCT 4 cut(s) 32, 130, 216, 434
AluI AGCT 4 cut(s) 32, 130, 216, 434
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 144
Alw44I GTGCAC 1 cut(s) 221
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 82
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 83
AsuII TTCGAA 2 cut(s) 22, 86
BaeGI GKGCMC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 225
BccI CCATC 1 cut(s) 338
BciVI GTATCC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 50, 347
BpiI GAAGAC 1 cut(s) 196
Bpu14I TTCGAA 2 cut(s) 22, 86
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 2 cut(s) 26, 45
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse118I RCCGGY 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 225
BshFI GGCC 1 cut(s) 234
BshTI ACCGGT 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 27, 46
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 234
Bsp119I TTCGAA 2 cut(s) 22, 86
Bsp1286I GDGCHC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 5 cut(s) 231, 248, 310, 381, 385
BspANI GGCC 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 50, 347
BspT104I TTCGAA 2 cut(s) 22, 86
BsrBI CCGCTC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 349
BstBI TTCGAA 2 cut(s) 22, 86
BstC8I GCNNGC 2 cut(s) 364, 383
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSLI GKGCMC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 191
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 364, 383
Cfr10I RCCGGY 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 327
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 1 cut(s) 350
CviJI RGCY 8 cut(s) 5, 32, 130, 216, 234, 289, 322, 434
CviKI_1 RGCY 8 cut(s) 5, 32, 130, 216, 234, 289, 322, 434
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 435
EciI GGCGGA 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 353
FaiI YATR 1 cut(s) 351
FatI CATG 1 cut(s) 349
FauI CCCGC 2 cut(s) 255, 374
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 234
HapII CCGG 2 cut(s) 27, 46
Hin1II CATG 1 cut(s) 353
HinfI GANTC 3 cut(s) 88, 188, 272
HpaII CCGG 2 cut(s) 27, 46
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 39, 306
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 223, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 1 cut(s) 353
LmnI GCTCC 2 cut(s) 29, 72
LpnPI CCDG 6 cut(s) 40, 59, 107, 273, 319, 332
MaeI CTAG 1 cut(s) 324
MbiI CCGCTC 1 cut(s) 250
MboII GAAGA 3 cut(s) 196, 267, 414
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 4 cut(s) 18, 82, 393, 426
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 122, 169, 173, 245, 249, 336, 381
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 2 cut(s) 27, 46
MwoI GCNNNNNNNGC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 349
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 2 cut(s) 50, 347
NspV TTCGAA 2 cut(s) 22, 86
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 88, 188, 272
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 50, 347
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SatI GCNGC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 225
SetI ASST 6 cut(s) 34, 132, 161, 218, 262, 436
SfuI TTCGAA 2 cut(s) 22, 86
Sse9I AATT 4 cut(s) 18, 82, 393, 426
SsiI CCGC 5 cut(s) 231, 248, 310, 381, 385
SspMI CTAG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 349
TaqI TCGA 5 cut(s) 22, 86, 114, 191, 400
TasI AATT 4 cut(s) 18, 82, 393, 426
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 3 cut(s) 88, 188, 272
TspDTI ATGAA 3 cut(s) 56, 267, 285
TspGWI ACGGA 1 cut(s) 155
VneI GTGCAC 1 cut(s) 221
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.