MD17G1173700.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014772
Physical Location & Seq
Forward (+)
18086277 .. 18088068
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1173700.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGTCATGCATCCATTTTTCTCTTATCTGTTCATATTTTCTGAGTGATCAGACACTAGCCGTGGCTACCAGCTTAGAAAGAGAGATGGGACATCACTCATGCTGCAACAAACAGAAAGTGAAGAGGGGGCTATGGTCTCCAGAGGAAGATGAAAAACTCATCAACTACATCACAACACATAGCCATGGCTGCTGGAGCTCAGTTCCTAAACTTGCAGGCCTTCAGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAATTATCTGAGACCTGACTTAAAACGTGGGAGCTTCTCTCCCCAAGAAGCTGCACTCATTATTGAACTCCATAGCATTCTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTGCCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAAAAGAAGCTCATTTCGCATGAAGTTATTCCTGCATTTGCGACCTTTTCTAATGATCATATTCACAACCCTAGTGGTCATGGCTCTGAGGAAGGTTTCTTCACTCTCAATACAAACCCTAATTTGGGTTCTCAACCACAAGATCAGCTATACCTCCCCATTGTTCCATCACCAATGCCATCACTAGGTCTCAATTATCATGGTGATTTTAATAACATTCTCAAGTTAGACCAGACCAATTACGCTTCCAATTTCGTCGATTGTTTTTTGCCTCCCTTCCAATTACCATCAAATAATTCATCCTCATATGAGTCCTCATCATGGTCCGCAGGATATCAACCCCAACCCCAATTTGATCCAAATATTCAGCAAGTTCAAAATTTCAGCATCAATGAAGCTGCAGCTGCTCAATATAATAATATTGGTAATGAGCTCATGGTTCCAATTAGTATGGCATCGTCAGCATCAGTCACTTATGAAAATCCTTTTATTTTAGCCACCGTGCCTAAATTTTGTGAGATCATTGATGGTAATGTTTGTAGAATGCCAATATTATACCCATCTGATCTAGAAGAACTTGATTCACTTGCCAAATTATCATGCTTTACATCTAGTCATGGATCTCACCCTCAAGATCTTCAATTTCCATCCAATCAATTAGAGTGCATTGATGCCATCATATCATTGTTGCCATCATCTTCATCATCGTCATCGCCTTCATCGGCATCTCCATCCTTGTTACCATTATCAAGCAACCAATTCGACACAAACTTTAACGCTCATTGA

Protein Analysis

402

Amino Acids

44.49

Weight (kDa)

5.81

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 42 - 89 2.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 45 - 102 1.9e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 95 - 138 2.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 143 4.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014772)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33830
malus_domestica MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica Prupe.3G046900_v2.0.a1
pyrus_communis pycom07g10290
rosa_chinensis RchiOBHm_Chr2g0143681
rosa_laevigata RLG00000020059
rosa_multiflora Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii Rroxscaffold_2G00101530
rosa_rugosa Rorug02G0384600
rosa_samantha Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana Rw2G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 244
AciI CCGC 1 cut(s) 747
AclWI GGATC 2 cut(s) 770, 1048
AcsI RAATTY 2 cut(s) 799, 929
AcuI CTGAAG 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 544, 545, 605, 741
AgsI TTSAA 3 cut(s) 323, 797, 1061
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 9 cut(s) 72, 198, 291, 308, 430, 568, 818, 824, 853
AluI AGCT 9 cut(s) 72, 198, 291, 308, 430, 568, 818, 824, 853
Alw21I GWGCWC 2 cut(s) 200, 855
Alw26I GTCTC 3 cut(s) 141, 262, 614
AlwI GGATC 2 cut(s) 770, 1048
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 6 cut(s) 102, 189, 308, 818, 821, 824
ApoI RAATTY 2 cut(s) 799, 929
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 744
AsuHPI GGTGA 3 cut(s) 582, 635, 1037
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 744
BanII GRGCYC 3 cut(s) 200, 355, 855
Bbv12I GWGCWC 2 cut(s) 200, 855
BbvI GCAGC 6 cut(s) 89, 176, 295, 805, 811, 833
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 1162, 1196
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 2 cut(s) 46, 475
BcoDI GTCTC 3 cut(s) 141, 262, 614
BfaI CTAG 6 cut(s) 56, 338, 492, 605, 989, 1032
BfmI CTRYAG 1 cut(s) 819
BfuAI ACCTGC 1 cut(s) 378
BglII AGATCT 1 cut(s) 1054
BisI GCNGC 6 cut(s) 103, 190, 309, 819, 822, 825
BlsI GCNGC 6 cut(s) 104, 191, 310, 820, 823, 826
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 744
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 6 cut(s) 18, 816, 884, 893, 1081, 1154
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 2 cut(s) 123, 214
BpuEI CTTGAG 2 cut(s) 626, 1035
BsaI GGTCTC 3 cut(s) 141, 262, 614
BsaJI CCNNGG 2 cut(s) 60, 184
Bsc4I CCNNNNNNNGG 4 cut(s) 544, 545, 605, 741
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 60, 184
BseGI GGATG 4 cut(s) 9, 719, 1067, 1151
BseLI CCNNNNNNNGG 4 cut(s) 544, 545, 605, 741
BseMII CTCAG 6 cut(s) 32, 213, 239, 257, 368, 498
BseXI GCAGC 6 cut(s) 89, 176, 295, 805, 811, 833
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 200, 855
BsiHKCI CYCGRG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 544, 545, 605, 741
BsmAI GTCTC 3 cut(s) 141, 262, 614
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 2 cut(s) 333, 969
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 3 cut(s) 141, 262, 614
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 200, 355, 855
Bsp143I GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 747
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 6 cut(s) 33, 212, 240, 258, 367, 499
BspLI GGNNCC 1 cut(s) 861
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 2 cut(s) 770, 1048
BspTNI GGTCTC 3 cut(s) 141, 262, 614
BssECI CCNNGG 2 cut(s) 60, 184
BssMI GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 922
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 7 cut(s) 41, 73, 199, 248, 266, 354, 507
BstDSI CCRYGG 2 cut(s) 60, 184
BstF5I GGATG 4 cut(s) 9, 719, 1067, 1151
BstKTI GATC 8 cut(s) 49, 478, 565, 778, 942, 988, 1043, 1057
BstMAI GTCTC 3 cut(s) 141, 262, 614
BstMBI GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
BstMWI GCNNNNNNNGC 7 cut(s) 189, 195, 339, 359, 436, 824, 881
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 6 cut(s) 89, 176, 295, 805, 811, 833
BstX2I RGATCY 2 cut(s) 1040, 1054
BstYI RGATCY 2 cut(s) 1040, 1054
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 2 cut(s) 60, 184
BtgZI GCGATG 1 cut(s) 1116
BtsCI GGATG 4 cut(s) 9, 719, 1067, 1151
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 744
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
DdeI CTNAG 7 cut(s) 41, 73, 199, 248, 266, 354, 507
DpnI GATC 8 cut(s) 48, 477, 564, 777, 941, 987, 1042, 1056
DpnII GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 2 cut(s) 198, 853
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 3 cut(s) 200, 355, 855
Eco31I GGTCTC 3 cut(s) 141, 262, 614
Eco32I GATATC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 744
Eco53kI GAGCTC 2 cut(s) 198, 853
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 412
EcoICRI GAGCTC 2 cut(s) 198, 853
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 11
EcoT38I GRGCYC 3 cut(s) 200, 355, 855
ErhI CCWWGG 1 cut(s) 184
FaqI GGGAC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 727
FbaI TGATCA 2 cut(s) 46, 475
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 6 cut(s) 103, 190, 309, 819, 822, 825
FokI GGATG 3 cut(s) 706, 1054, 1138
FriOI GRGCYC 3 cut(s) 200, 355, 855
Fsp4HI GCNGC 6 cut(s) 103, 190, 309, 819, 822, 825
FspBI CTAG 6 cut(s) 56, 338, 492, 605, 989, 1032
GluI GCNGC 6 cut(s) 103, 190, 309, 819, 822, 825
GsuI CTGGAG 2 cut(s) 123, 214
HaeIII GGCC 1 cut(s) 219
HinfI GANTC 2 cut(s) 731, 1001
HphI GGTGA 3 cut(s) 582, 635, 1037
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 7 cut(s) 42, 51, 225, 267, 357, 508, 985
Hpy188III TCNNGA 3 cut(s) 140, 989, 1052
Hpy8I GTNNAC 1 cut(s) 245
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 4 cut(s) 230, 506, 706, 1146
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 7 cut(s) 9, 105, 215, 311, 455, 821, 1086
HpyF10VI GCNNNNNNNGC 7 cut(s) 189, 195, 339, 359, 436, 824, 881
HpyF3I CTNAG 7 cut(s) 41, 73, 199, 248, 266, 354, 507
HpySE526I ACGT 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 46, 475
Kzo9I GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
LmnI GCTCC 2 cut(s) 195, 288
Lsp1109I GCAGC 6 cut(s) 89, 176, 295, 805, 811, 833
LweI GCATC 6 cut(s) 18, 816, 884, 893, 1081, 1154
MaeI CTAG 6 cut(s) 56, 338, 492, 605, 989, 1032
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 889, 1158
MalI GATC 8 cut(s) 48, 477, 564, 777, 941, 987, 1042, 1056
MboI GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
MboII GAAGA 8 cut(s) 133, 158, 390, 409, 511, 1004, 1049, 1110
MflI RGATCY 2 cut(s) 1040, 1054
MhlI GDGCHC 3 cut(s) 200, 355, 855
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 8 cut(s) 117, 136, 502, 584, 702, 733, 745, 1059
Mph1103I ATGCAT 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 3 cut(s) 278, 630, 1194
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 824
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 2 cut(s) 333, 969
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 7 cut(s) 189, 195, 339, 359, 436, 824, 881
NcoI CCATGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 727
NdeII GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 889
NsiI ATGCAT 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 378
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 2 cut(s) 333, 969
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 1001
PkrI GCNGC 6 cut(s) 104, 191, 310, 820, 823, 826
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp124BI GAGCTC 2 cut(s) 200, 855
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 1 cut(s) 744
PspXI VCTCGAGB 1 cut(s) 412
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 2 cut(s) 1040, 1054
PvuII CAGCTG 1 cut(s) 824
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 2 cut(s) 200, 855
SaqAI TTAA 3 cut(s) 278, 630, 1194
SatI GCNGC 6 cut(s) 103, 190, 309, 819, 822, 825
Sau3AI GATC 8 cut(s) 46, 475, 562, 775, 939, 985, 1040, 1054
Sau96I GGNCC 1 cut(s) 744
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 3 cut(s) 200, 355, 855
SfaNI GCATC 6 cut(s) 18, 816, 884, 893, 1081, 1154
SfcI CTRYAG 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 744
SlaI CTCGAG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 3 cut(s) 412, 641, 1050
SmoI CTYRAG 3 cut(s) 412, 641, 1050
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 1 cut(s) 747
SspI AATATT 3 cut(s) 784, 841, 972
SspMI CTAG 6 cut(s) 56, 338, 492, 605, 989, 1032
SstI GAGCTC 2 cut(s) 200, 855
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 922
TaiI ACGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 413, 678, 1182
TfiI GAWTC 1 cut(s) 1001
Tru1I TTAA 3 cut(s) 278, 630, 1194
Tru9I TTAA 3 cut(s) 278, 630, 1194
TseFI GTSAC 1 cut(s) 889
TseI GCWGC 6 cut(s) 102, 189, 308, 818, 821, 824
Tsp45I GTSAC 1 cut(s) 889
TspDTI ATGAA 9 cut(s) 21, 165, 405, 456, 708, 828, 912, 1110, 1128
VpaK11BI GGWCC 1 cut(s) 744
XapI RAATTY 2 cut(s) 799, 929
XbaI TCTAGA 1 cut(s) 988
XhoI CTCGAG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 6 cut(s) 56, 338, 492, 605, 989, 1032
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.