Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014772

Physical Location & Seq

Genomic Coordinates Forward (+)

16690630 .. 16692324

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1191100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTCATGCATCCATTTCTCTCTCATCTCTTCATATTTTCGGAGTGATCAGAACCTAGCTGTGGCTAGAGAGAGAGAGATGGGACATCACTCATGCTGCAGCAAACAGAAAGTGAAGAGGGGGCTATGGTCTCCGGAGGAAGATGAAAAACTCATCAACTGCATTACAACATATGGCCATGGCTGCTGGAGCTCAGTTCCTCAACATGCAGGCCTTCAGAGATGTGGAAAGAGCTGCAGACTGAGATGGACAAATTATTTGAGACCAGACTTGAAACGTGGGAGCTTCTCTCCCCAAGAAGCTGCACTCATCATCGAACTCCATAGCATTCTAGGCAACAAATGGGCTCAGATAGCCAAGCACCTGCCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCAAGCATAAAAAAGAAGCTCATCCCTCATGAAGTTAATCCTGCATTTGCCTCCTTTTCTAGTGATCATATTCACAACTCTAGAAGTCATGGCTCTGAGGAAGGTTTCTTCACTCTCAATACAAACCCTAATTTGGGTTCTCAACCACAAGACCAGCTATACCTCCCCATTGTTCCATCACCAACTCCATCACTAGGTCTCGATTATCATGGTGATTTTAATAACATTCTCAAGTTAGACCAGACCAGTTACGCTTCCAATTTCGTCGATCATTTTTTGCCGCCTTTCCAATTACCATCAAATAATTCATCCTCATGTGAATCCTCATCATGGTCTTTAGGCTATCAGCCCCATTGCCAATATGATCCAAATGTTCAACAAGTTCAAAATTTCAGCATCAATGAAGCTGCAGCTGCACAGTATAATAATATTGGTAATGAGCTCATGGTTCCAATTAGTATGGCATCGTCAGCGCCAGCCGCTTATGAAATCATTGATAGTAATGCTTGTGGAATGCCAATACTATACCCATCTGATACACAAGAACTTGATTCACTTACCAAATTATCATGTTTTACTTCTGATCATGGGTCTCACCCTCAAGATCTTCAATTTCCATCCAACCAGTTGGAGTGCATTAAGGCAATCATGTCCTCGTTGCCATCGTCTTCATCATCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

363

Amino Acids

40.28

Weight (kDa)

6.13

Isoelectric Point (pI)

64.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 87	4.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	43 - 100	1.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	93 - 136	2.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	96 - 141	1.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33830
malus_domestica	MD09G1191100.v1.1 MD17G1173700.v1.1
prunus_persica	Prupe.3G046900_v2.0.a1
pyrus_communis	pycom07g10290
rosa_chinensis	RchiOBHm_Chr2g0143681
rosa_laevigata	RLG00000020059
rosa_multiflora	Rmu_sc0004340.1_g000009 Rmu_sc0016065.1_g000002 Rmu_sc0032473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101530
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG436800 Rh2BG444400 Rh2CG423100 Rh2DG454700
rosa_wichuraiana	Rw2G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	2 cut(s)	686, 885
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	61, 538, 539, 599, 735
AgsI	TTSAA	4 cut(s)	274, 782, 791, 1016
AjnI	CCWGG	1 cut(s)	367
Alw21I	GWGCWC	2 cut(s)	194, 849
Alw26I	GTCTC	4 cut(s)	135, 256, 608, 1002
AlwI	GGATC	1 cut(s)	764
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	2 cut(s)	175, 211
ApeKI	GCWGC	8 cut(s)	96, 99, 183, 234, 302, 812, 815, 818
ApoI	RAATTY	1 cut(s)	793
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AspLEI	GCGC	1 cut(s)	880
AsuHPI	GGTGA	3 cut(s)	576, 629, 992
BalI	TGGCCA	1 cut(s)	177
BanII	GRGCYC	3 cut(s)	194, 349, 849
BbsI	GAAGAC	1 cut(s)	1065
Bbv12I	GWGCWC	2 cut(s)	194, 849
BbvI	GCAGC	8 cut(s)	83, 111, 170, 221, 289, 799, 805, 827
BccI	CCATC	8 cut(s)	73, 240, 589, 601, 709, 943, 1030, 1075
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	3 cut(s)	46, 469, 988
BcoDI	GTCTC	4 cut(s)	135, 256, 608, 1002
BfaI	CTAG	6 cut(s)	56, 66, 332, 465, 486, 599
BfmI	CTRYAG	3 cut(s)	97, 235, 813
BfoI	RGCGCY	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	1009
Bme1390I	CCNGG	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	18, 810, 878
BpiI	GAAGAC	1 cut(s)	1065
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	3 cut(s)	391, 620, 990
BsaI	GGTCTC	4 cut(s)	135, 256, 608, 1002
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 538, 539, 599, 735
Bse1I	ACTGG	2 cut(s)	651, 1030
Bse3DI	GCAATG	1 cut(s)	757
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	4 cut(s)	9, 426, 713, 1022
BseLI	CCNNNNNNNGG	5 cut(s)	61, 538, 539, 599, 735
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	4 cut(s)	207, 233, 362, 492
BseNI	ACTGG	2 cut(s)	651, 1030
BseXI	GCAGC	8 cut(s)	83, 111, 170, 221, 289, 799, 805, 827
BsgI	GTGCAG	2 cut(s)	288, 804
BshFI	GGCC	2 cut(s)	177, 213
BsiHKAI	GWGCWC	2 cut(s)	194, 849
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	5 cut(s)	61, 538, 539, 599, 735
BsmAI	GTCTC	4 cut(s)	135, 256, 608, 1002
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	2 cut(s)	327, 924
BsnI	GGCC	2 cut(s)	177, 213
Bso31I	GGTCTC	4 cut(s)	135, 256, 608, 1002
Bsp1286I	GDGCHC	3 cut(s)	194, 349, 849
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	2 cut(s)	686, 885
BspANI	GGCC	2 cut(s)	177, 213
BspCNI	CTCAG	4 cut(s)	206, 234, 361, 493
BspEI	TCCGGA	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	3 cut(s)	101, 239, 817
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	4 cut(s)	135, 256, 608, 1002
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	651, 1030
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	825
Bst6I	CTCTTC	2 cut(s)	34, 110
BstC8I	GCNNGC	2 cut(s)	211, 882
BstDEI	CTNAG	4 cut(s)	193, 242, 348, 501
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	9, 426, 713, 1022
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	6 cut(s)	49, 472, 676, 772, 991, 1012
BstMAI	GTCTC	4 cut(s)	135, 256, 608, 1002
BstMBI	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
BstMWI	GCNNNNNNNGC	7 cut(s)	183, 189, 333, 353, 818, 875, 884
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	3 cut(s)	97, 235, 813
BstV1I	GCAGC	8 cut(s)	83, 111, 170, 221, 289, 799, 805, 827
BstV2I	GAAGAC	1 cut(s)	1065
BstX2I	RGATCY	1 cut(s)	1009
BstXI	CCANNNNNNTGG	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	177, 213
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	9, 426, 713, 1022
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	211, 882
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	880
DdeI	CTNAG	4 cut(s)	193, 242, 348, 501
DpnI	GATC	6 cut(s)	48, 471, 675, 771, 990, 1011
DpnII	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	34, 110
EarI	CTCTTC	2 cut(s)	34, 110
Ecl136II	GAGCTC	2 cut(s)	192, 847
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	3 cut(s)	194, 349, 849
Eco31I	GGTCTC	4 cut(s)	135, 256, 608, 1002
Eco53kI	GAGCTC	2 cut(s)	192, 847
Eco57I	CTGAAG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	192, 847
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	11
EcoT38I	GRGCYC	3 cut(s)	194, 349, 849
ErhI	CCWWGG	1 cut(s)	178
FaqI	GGGAC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	3 cut(s)	46, 469, 988
FokI	GGATG	3 cut(s)	413, 700, 1009
FriOI	GRGCYC	3 cut(s)	194, 349, 849
FspBI	CTAG	6 cut(s)	56, 66, 332, 465, 486, 599
GlaI	GCGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	177, 213
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	880
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HinfI	GANTC	2 cut(s)	725, 956
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	3 cut(s)	576, 629, 992
Hpy188I	TCNGA	7 cut(s)	42, 51, 219, 351, 502, 940, 988
Hpy188III	TCNNGA	5 cut(s)	134, 434, 486, 605, 1007
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	2 cut(s)	224, 500
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4IV	ACGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	7 cut(s)	183, 189, 333, 353, 818, 875, 884
HpyF3I	CTNAG	4 cut(s)	193, 242, 348, 501
HpySE526I	ACGT	1 cut(s)	277
HspAI	GCGC	1 cut(s)	878
Kpn2I	TCCGGA	1 cut(s)	133
Ksp22I	TGATCA	3 cut(s)	46, 469, 988
Kzo9I	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
LmnI	GCTCC	2 cut(s)	189, 282
Lsp1109I	GCAGC	8 cut(s)	83, 111, 170, 221, 289, 799, 805, 827
LweI	GCATC	3 cut(s)	18, 810, 878
MaeI	CTAG	6 cut(s)	56, 66, 332, 465, 486, 599
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	6 cut(s)	48, 471, 675, 771, 990, 1011
MboI	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
MboII	GAAGA	8 cut(s)	21, 127, 152, 384, 403, 505, 1004, 1065
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	3 cut(s)	194, 349, 849
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	9 cut(s)	253, 535, 664, 695, 709, 793, 858, 968, 1016
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	1014, 1050
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	11
MroI	TCCGGA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	3 cut(s)	441, 624, 1044
MslI	CAYNNNNRTG	1 cut(s)	718
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	2 cut(s)	327, 924
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	7 cut(s)	183, 189, 333, 353, 818, 875, 884
NcoI	CCATGG	1 cut(s)	178
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
NlaIV	GGNNCC	1 cut(s)	855
NsiI	ATGCAT	1 cut(s)	11
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	1067
PctI	GAATGC	2 cut(s)	327, 924
PfeI	GAWTC	2 cut(s)	725, 956
Psp124BI	GAGCTC	2 cut(s)	194, 849
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	855
PstI	CTGCAG	3 cut(s)	101, 239, 817
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	818
RseI	CAYNNNNRTG	1 cut(s)	718
SacI	GAGCTC	2 cut(s)	194, 849
SaqAI	TTAA	3 cut(s)	441, 624, 1044
Sau3AI	GATC	6 cut(s)	46, 469, 673, 769, 988, 1009
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	3 cut(s)	194, 349, 849
SfaNI	GCATC	3 cut(s)	18, 810, 878
SfcI	CTRYAG	3 cut(s)	97, 235, 813
SmiMI	CAYNNNNRTG	1 cut(s)	718
SmlI	CTYRAG	3 cut(s)	406, 635, 1005
SmoI	CTYRAG	3 cut(s)	406, 635, 1005
Sse9I	AATT	9 cut(s)	253, 535, 664, 695, 709, 793, 858, 968, 1016
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	686, 885
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	6 cut(s)	56, 66, 332, 465, 486, 599
SstI	GAGCTC	2 cut(s)	194, 849
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	825
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	315, 606, 672
TasI	AATT	9 cut(s)	253, 535, 664, 695, 709, 793, 858, 968, 1016
TauI	GCSGC	2 cut(s)	688, 887
TfiI	GAWTC	2 cut(s)	725, 956
Tru1I	TTAA	3 cut(s)	441, 624, 1044
Tru9I	TTAA	3 cut(s)	441, 624, 1044
TseI	GCWGC	8 cut(s)	96, 99, 183, 234, 302, 812, 815, 818
TspDTI	ATGAA	8 cut(s)	21, 159, 399, 450, 702, 822, 906, 1065
XapI	RAATTY	1 cut(s)	793
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	6 cut(s)	56, 66, 332, 465, 486, 599
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.