FvH4_6g36070

Mitochondrial K+-H+ exchange-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011394
Physical Location & Seq
Reverse (-)
28405590 .. 28409531
3942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36070.t1

Sequence Viewer

Length: 822 bp
ATGAGAGCGAGATTGATAGTGTTTCCTGTAAAAGGGAGGAACTGGTGTTTTACCAGATCAATTGATCCTCTGGTTTCGGATTCTGGTTCTGGAAATACTCCTTCTACTCTCAAAGATCTCTGGAAAAGGATCAATTTCAGTTCCAATCCCAATGTTAATTCTACTTCCAATGCCAATGCCAATATCTTTGCTGCTAATGCTGAACTCCTAGTTGATTTTACCTCTAACAAGATGAACAATGCTTGGATTAGTCTGGAGAAGGCGCCAGAGGGAACCTTTAAAAGAAAGATTCATGGGGTGGGATTGAAGCTATTATCTCGGGTGAAGCCGTCTGAGATGTTTTTGAAATCTATCACTAATGAGGTCTCACATGTTGAAGTTACATACCCTTCAAGCTTAAATGCACGACTTGTGCGTAGGAGGTTACGACATATTGCCATGAGGGGATCTATCATACACAAGAAGTACTTATATGGATCGGTTATGTTGCTCCCTCTGACATCTGCATTTATGGTTTTGCCTTTGCCTAACATTCCCTTCTTCTGGTGTTTATTCCGTACTTACTCTCATTGGCGAGCTCTCCAGGGAAGCGAGAAGCTTCTTCAGCTAATCTCAGATAGCGCGGAGACTCCAGATGGAAATGGAGTTGAGCATGGAACGAAGAAGTTACTTAGTTCTCCTTGGGTTTTGCAGCCATCCAAAGCACTTGAGGAACTTCTTCATCAGGGAGATGATGATCTGAACAAGCAGGCTATATTAAAAATCTGCAAAGCCTTTGATTTGAACTCGAATGATGTTTTAAAATACAGAGATACAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mit_KHE1

Protein Analysis

274

Amino Acids

30.81

Weight (kDa)

9.78

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mit_KHE1 PF10173 4 - 204 1.7e-43 Mitochondrial K+-H+ exchange-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53760 AT1G53760
fragaria_vesca FvH4_6g36070 FvH4_6g36070
malus_domestica MD09G1171800.v1.1 MD17G1155200.v1.1
prunus_persica Prupe.3G030200_v2.0.a1
pyrus_communis pycom09g08910 pycom17g14800
rosa_chinensis RchiOBHm_Chr2g0148141
rosa_laevigata RLG00000020320
rosa_multiflora Rmu_sc0001516.1_g000097 Rmu_sc0012028.1_g000004
rosa_roxburghii Rroxscaffold_2G00099050
rosa_rugosa Rorug02G0403900
rosa_samantha Rh2AG462500 Rh2BG475500 Rh2CG449300 Rh2DG484200
rosa_wichuraiana Rw2G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 623
AciI CCGC 1 cut(s) 623
AclWI GGATC 4 cut(s) 59, 137, 454, 484
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 2 cut(s) 467, 559
AfiI CCNNNNNNNGG 2 cut(s) 32, 543
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 5 cut(s) 307, 346, 377, 393, 784
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 5 cut(s) 310, 396, 578, 598, 607
AluI AGCT 5 cut(s) 310, 396, 578, 598, 607
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 370, 620
AlwI GGATC 4 cut(s) 59, 137, 454, 484
Ama87I CYCGRG 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 191, 691
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 2 cut(s) 265, 623
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 318
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 178, 703
BccI CCATC 2 cut(s) 629, 703
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 370, 620
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 266
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 192, 692
BlsI GCNGC 2 cut(s) 193, 693
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 264, 274
BmrFI CCNGG 1 cut(s) 584
BpmI CTGGAG 3 cut(s) 275, 566, 615
BpuEI CTTGAG 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 583, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 543
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 2 cut(s) 583, 680
BseGI GGATG 1 cut(s) 695
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 32, 543
BseMII CTCAG 2 cut(s) 324, 627
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 178, 703
Bsh1236I CGCG 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 32, 543
BsmAI GTCTC 2 cut(s) 370, 620
Bso31I GGTCTC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
BspACI CCGC 1 cut(s) 623
BspCNI CTCAG 2 cut(s) 325, 626
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 2 cut(s) 264, 274
BspPI GGATC 4 cut(s) 59, 137, 454, 484
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 370
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 583, 680
BssMI GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 584
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 576, 750
BstDEI CTNAG 3 cut(s) 333, 613, 671
BstENI CCTNNNNNAGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 695
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 623
BstKTI GATC 7 cut(s) 59, 67, 118, 132, 449, 479, 739
BstMAI GTCTC 2 cut(s) 370, 620
BstMBI GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
BstMWI GCNNNNNNNGC 2 cut(s) 197, 604
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 582
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 178, 703
BstX2I RGATCY 2 cut(s) 115, 446
BstYI RGATCY 2 cut(s) 115, 446
BtsCI GGATG 1 cut(s) 695
Cac8I GCNNGC 2 cut(s) 576, 750
CfoI GCGC 2 cut(s) 265, 623
Csp6I GTAC 2 cut(s) 466, 558
CviAII CATG 4 cut(s) 293, 371, 439, 653
CviJI RGCY 9 cut(s) 310, 328, 396, 578, 598, 607, 694, 752, 773
CviKI_1 RGCY 9 cut(s) 310, 328, 396, 578, 598, 607, 694, 752, 773
CviQI GTAC 2 cut(s) 466, 558
DdeI CTNAG 3 cut(s) 333, 613, 671
DinI GGCGCC 1 cut(s) 264
DpnI GATC 7 cut(s) 58, 66, 117, 131, 448, 478, 738
DpnII GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
DraI TTTAAA 2 cut(s) 280, 801
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 580
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 4 cut(s) 296, 374, 442, 656
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 4 cut(s) 292, 370, 438, 652
Fnu4HI GCNGC 2 cut(s) 192, 692
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 2 cut(s) 192, 692
FspBI CTAG 1 cut(s) 209
GlaI GCGC 2 cut(s) 264, 622
GluI GCNGC 2 cut(s) 192, 692
GsuI CTGGAG 3 cut(s) 275, 566, 615
HaeII RGCGCY 1 cut(s) 266
HhaI GCGC 2 cut(s) 265, 623
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 4 cut(s) 296, 374, 442, 656
Hin6I GCGC 2 cut(s) 263, 621
HinP1I GCGC 2 cut(s) 263, 621
HindIII AAGCTT 2 cut(s) 394, 596
HinfI GANTC 3 cut(s) 80, 289, 628
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 79, 334, 498, 616, 741
Hpy188III TCNNGA 4 cut(s) 90, 121, 254, 632
HpyAV CCTTC 4 cut(s) 111, 253, 399, 547
HpyCH4V TGCA 4 cut(s) 404, 506, 691, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 604
HpyF3I CTNAG 3 cut(s) 333, 613, 671
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 4 cut(s) 296, 374, 442, 656
HspAI GCGC 2 cut(s) 263, 621
KasI GGCGCC 1 cut(s) 262
Kzo9I GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 2 cut(s) 178, 703
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 3 cut(s) 379, 423, 666
MalI GATC 7 cut(s) 58, 66, 117, 131, 448, 478, 738
MboI GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
MboII GAAGA 4 cut(s) 532, 593, 673, 710
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 2 cut(s) 115, 446
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 60, 133, 157
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 622
MnlI CCTC 9 cut(s) 30, 78, 232, 262, 355, 414, 435, 504, 703
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 5 cut(s) 156, 279, 398, 758, 800
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 2 cut(s) 197, 604
NarI GGCGCC 1 cut(s) 263
NdeII GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
NlaIII CATG 4 cut(s) 296, 374, 442, 656
NlaIV GGNNCC 2 cut(s) 264, 274
NspI RCATGY 1 cut(s) 374
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 80, 289
PkrI GCNGC 2 cut(s) 193, 693
PleI GAGTC 1 cut(s) 622
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 622
PscI ACATGT 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 264, 274
PsuI RGATCY 2 cut(s) 115, 446
RsaI GTAC 2 cut(s) 467, 559
RsaNI GTAC 2 cut(s) 466, 558
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 5 cut(s) 156, 279, 398, 758, 800
SatI GCNGC 2 cut(s) 192, 692
Sau3AI GATC 7 cut(s) 56, 64, 115, 129, 446, 476, 736
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 580
SetI ASST 9 cut(s) 224, 278, 312, 366, 398, 425, 580, 600, 609
SfoI GGCGCC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 3 cut(s) 60, 133, 157
SsiI CCGC 1 cut(s) 623
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 680
TaqI TCGA 1 cut(s) 788
TasI AATT 3 cut(s) 60, 133, 157
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 2 cut(s) 80, 289
Tru1I TTAA 5 cut(s) 156, 279, 398, 758, 800
Tru9I TTAA 5 cut(s) 156, 279, 398, 758, 800
TseI GCWGC 2 cut(s) 191, 691
TspDTI ATGAA 3 cut(s) 248, 281, 710
TspGWI ACGGA 1 cut(s) 545
XagI CCTNNNNNAGG 1 cut(s) 30
XceI RCATGY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.