Rmu_sc0001516.1_g000097

Mitochondrial K+-H+ exchange-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
OG0011394
Physical Location & Seq
Forward (+)
392492 .. 393973
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001516.1_g000097.1.cds

Sequence Viewer

Length: 429 bp
atgggaccagaatttattgatttgaagtttaatctgattatcaggggatctatcatacacaagaagtacttatacggctccgttacgttgctccctctgacatctgcatttatggttttgcctttgcctaatattcccttcttctggtgtttattccgtacttactctcattggcgagctctccagggaagcgagaagcttcttcagctagtctcagatagcccaaagactccagatggaaatggagttgagcatggaacgaaaaagttacttaattctccgtgggttttgcagccatccaaagaacttgaggaacttcttcatcagggagatgaacacaatgatctgaataagcaggctatattaaaagtctgcaaagcctttgatttgaactcgaatgatgttctaaaatacagagataccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mit_KHE1

Protein Analysis

142

Amino Acids

16.27

Weight (kDa)

7.8

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53760 AT1G53760
fragaria_vesca FvH4_6g36070 FvH4_6g36070
malus_domestica MD09G1171800.v1.1 MD17G1155200.v1.1
prunus_persica Prupe.3G030200_v2.0.a1
pyrus_communis pycom09g08910 pycom17g14800
rosa_chinensis RchiOBHm_Chr2g0148141
rosa_laevigata RLG00000020320
rosa_multiflora Rmu_sc0001516.1_g000097 Rmu_sc0012028.1_g000004
rosa_roxburghii Rroxscaffold_2G00099050
rosa_rugosa Rorug02G0403900
rosa_samantha Rh2AG462500 Rh2BG475500 Rh2CG449300 Rh2DG484200
rosa_wichuraiana Rw2G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 2 cut(s) 68, 160
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 25, 391
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 3 cut(s) 179, 199, 208
AluI AGCT 3 cut(s) 179, 199, 208
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 181
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 230, 304
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 79
BmrFI CCNGG 1 cut(s) 185
BpmI CTGGAG 2 cut(s) 167, 216
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 184, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 184, 281
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 47, 343
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 6, 79
BspPI GGATC 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 184, 281
BssMI GATC 2 cut(s) 47, 343
Bst2UI CCWGG 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 177, 357
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 2 cut(s) 50, 346
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 47, 343
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 177, 357
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 67, 159
CviAII CATG 2 cut(s) 254, 424
CviJI RGCY 8 cut(s) 78, 179, 199, 208, 222, 295, 359, 380
CviKI_1 RGCY 8 cut(s) 78, 179, 199, 208, 222, 295, 359, 380
CviQI GTAC 2 cut(s) 67, 159
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 49, 345
DpnII GATC 2 cut(s) 47, 343
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 181
FaeI CATG 2 cut(s) 257, 427
FaiI YATR 6 cut(s) 56, 73, 113, 255, 362, 425
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 253, 423
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 293
GsuI CTGGAG 2 cut(s) 167, 216
Hin1II CATG 2 cut(s) 257, 427
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 229
Hpy188I TCNGA 4 cut(s) 36, 99, 217, 348
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 107, 292, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 2 cut(s) 257, 427
Kzo9I GATC 2 cut(s) 47, 343
LmnI GCTCC 2 cut(s) 83, 96
LpnPI CCDG 8 cut(s) 21, 28, 130, 170, 197, 246, 311, 341
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 82, 267
MalI GATC 2 cut(s) 49, 345
MboI GATC 2 cut(s) 47, 343
MboII GAAGA 3 cut(s) 133, 194, 311
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 11, 274
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 2 cut(s) 105, 304
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 30, 273, 365
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 2 cut(s) 47, 343
NlaIII CATG 2 cut(s) 257, 427
NlaIV GGNNCC 2 cut(s) 6, 79
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 6, 79
PspPI GGNCC 1 cut(s) 5
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 2 cut(s) 68, 160
RsaNI GTAC 2 cut(s) 67, 159
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 30, 273, 365
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 47, 343
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 89, 181, 201, 210
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 11, 274
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 395
TasI AATT 2 cut(s) 11, 274
TatI WGTACW 1 cut(s) 66
Tru1I TTAA 3 cut(s) 30, 273, 365
Tru9I TTAA 3 cut(s) 30, 273, 365
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 311, 348
TspGWI ACGGA 3 cut(s) 70, 146, 270
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.