Prupe.3G030200_v2.0.a1

Mitochondrial K+-H+ exchange-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011394
Physical Location & Seq
Reverse (-)
2257967 .. 2262122
4156 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G030200.1

Sequence Viewer

Length: 825 bp
ATGAGAGCGAGAGTGATAGTGTTTCCTGTTAGAGGGAGGAACTGGTGCTTCAGCAGATCCATTGAGCCTCTGGTTTCAGATTCTGCCTCTCATATTCCTTCAACTCTCAAAGACCTCTGGAAAAAGCTCTCTTTCTCATCCAATACCAATGCCAACCCTTTTGCTGCCAACGCTGAGCTCCTCGTTGATTTTGTCTCTACCAAGATGAACAATGCCTGGATGGGGCTGGAGAAGGCGCCTCAGGGAACTTTTAAAAACAAGCTTCATGGGTTGGGATTGAAGCTGTTAGCTCGCGTTAAGCCTTCTGAGATTTTCCTGAAATCAATCTCTAATGAGATCACGGGTGTTGAAGTTACATACCCTTCAAGCTTAAATGCACGGCTTGTCCGTAGGAGGTTACGACATATAGCTATGAGGGGATCTATCATACACAAAAAGTACTTATATGGTTCGTTTACGTTGCTTCCTCTGACATCTGCATTTACTGTTTTGCCTTTGCCTAATATTCCCTTCTTTTGGTGTTTATTCCGTACTTACTCTCATTGGCGAGCTCTACAGGGAAGCGTGAAGCTCCTTCAGCTAGTCTCAGATAGCCATGACACTCCCAATTCTACTATCGATGGAAATGAACCTGAGCACATTAAATCACACGGACGCAAAAAGATACATGATTCTCCATGGGTTTTGCAGCCGTCCAAAGAACTTGAGGAACTTCTTCATCATGGAGATGAGCAAGACGGTCTGAAAAAACCTGCTATATTAGATGTCTGCAAAACCTTTGAATTGAACACTAATGATGTTCTGAAATACAGAGATTCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mit_KHE1

Protein Analysis

275

Amino Acids

31.13

Weight (kDa)

9.68

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53760 AT1G53760
fragaria_vesca FvH4_6g36070 FvH4_6g36070
malus_domestica MD09G1171800.v1.1 MD17G1155200.v1.1
prunus_persica Prupe.3G030200_v2.0.a1
pyrus_communis pycom09g08910 pycom17g14800
rosa_chinensis RchiOBHm_Chr2g0148141
rosa_laevigata RLG00000020320
rosa_multiflora Rmu_sc0001516.1_g000097 Rmu_sc0012028.1_g000004
rosa_roxburghii Rroxscaffold_2G00099050
rosa_rugosa Rorug02G0403900
rosa_samantha Rh2AG462500 Rh2BG475500 Rh2CG449300 Rh2DG484200
rosa_wichuraiana Rw2G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 760
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 294
AclWI GGATC 2 cut(s) 51, 427
AcuI CTGAAG 2 cut(s) 34, 560
AcyI GRCGYC 1 cut(s) 236
AfaI GTAC 2 cut(s) 440, 532
AfiI CCNNNNNNNGG 3 cut(s) 32, 222, 516
AgsI TTSAA 7 cut(s) 102, 280, 350, 366, 782, 787, 819
AjnI CCWGG 1 cut(s) 215
Alw21I GWGCWC 3 cut(s) 180, 553, 639
Alw26I GTCTC 2 cut(s) 199, 589
AlwI GGATC 2 cut(s) 51, 427
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 164, 688
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 180, 553
Bbv12I GWGCWC 3 cut(s) 180, 553, 639
BbvI GCAGC 2 cut(s) 151, 700
BccI CCATC 2 cut(s) 214, 614
BceAI ACGGC 2 cut(s) 395, 676
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 199, 589
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 760
BisI GCNGC 2 cut(s) 165, 689
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 2 cut(s) 166, 690
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 725
Bsa29I ATCGAT 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 677
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 222, 516
Bse1I ACTGG 1 cut(s) 47
Bse21I CCTNAGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 2 cut(s) 137, 225
BseLI CCNNNNNNNGG 3 cut(s) 32, 222, 516
BseMII CTCAG 5 cut(s) 165, 254, 297, 600, 624
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 151, 700
Bsh1236I CGCG 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 618
BsiHKAI GWGCWC 3 cut(s) 180, 553, 639
BslI CCNNNNNNNGG 3 cut(s) 32, 222, 516
BsmAI GTCTC 2 cut(s) 199, 589
Bsp1286I GDGCHC 3 cut(s) 180, 553, 639
Bsp143I GATC 3 cut(s) 56, 336, 419
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 677
BspCNI CTCAG 5 cut(s) 166, 253, 298, 599, 625
BspDI ATCGAT 1 cut(s) 618
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 760
BspPI GGATC 2 cut(s) 51, 427
BspT107I GGYRCC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 3 cut(s) 56, 336, 419
BssNI GRCGYC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 677
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 487, 740
BstACI GRCGYC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 292, 549
BstDEI CTNAG 5 cut(s) 174, 240, 306, 586, 633
BstDSI CCRYGG 1 cut(s) 677
BstENI CCTNNNNNAGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 137, 225
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 59, 339, 422
BstMAI GTCTC 2 cut(s) 199, 589
BstMBI GATC 3 cut(s) 56, 336, 419
BstMWI GCNNNNNNNGC 2 cut(s) 170, 577
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 554
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 151, 700
BstX2I RGATCY 2 cut(s) 56, 419
BstYI RGATCY 2 cut(s) 56, 419
Bsu15I ATCGAT 1 cut(s) 618
Bsu36I CCTNAGG 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 618
BtgI CCRYGG 1 cut(s) 677
BtsCI GGATG 2 cut(s) 137, 225
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 292, 549
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 238
ClaI ATCGAT 1 cut(s) 618
CseI GACGC 1 cut(s) 663
Csp6I GTAC 2 cut(s) 439, 531
CviAII CATG 5 cut(s) 266, 596, 668, 678, 722
CviQI GTAC 2 cut(s) 439, 531
DdeI CTNAG 5 cut(s) 174, 240, 306, 586, 633
DinI GGCGCC 1 cut(s) 237
DpnI GATC 3 cut(s) 58, 338, 421
DpnII GATC 3 cut(s) 56, 336, 419
DraI TTTAAA 1 cut(s) 253
Ecl136II GAGCTC 2 cut(s) 178, 551
Eco130I CCWWGG 1 cut(s) 677
Eco24I GRGCYC 2 cut(s) 180, 553
Eco53kI GAGCTC 2 cut(s) 178, 551
Eco57I CTGAAG 2 cut(s) 34, 560
Eco81I CCTNAGG 1 cut(s) 240
EcoICRI GAGCTC 2 cut(s) 178, 551
EcoNI CCTNNNNNAGG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 180, 553
EgeI GGCGCC 1 cut(s) 237
EheI GGCGCC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 677
FaeI CATG 5 cut(s) 269, 599, 671, 681, 725
FatI CATG 5 cut(s) 265, 595, 667, 677, 721
Fnu4HI GCNGC 2 cut(s) 165, 689
FokI GGATG 2 cut(s) 124, 232
FriOI GRGCYC 2 cut(s) 180, 553
Fsp4HI GCNGC 2 cut(s) 165, 689
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 165, 689
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 239
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 5 cut(s) 269, 599, 671, 681, 725
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 2 cut(s) 260, 367
HinfI GANTC 3 cut(s) 80, 671, 815
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 6 cut(s) 79, 307, 471, 589, 744, 804
Hpy188III TCNNGA 2 cut(s) 118, 316
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 6 cut(s) 108, 226, 312, 372, 520, 584
HpyCH4III ACNGT 2 cut(s) 487, 740
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 377, 479, 688, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 577
HpyF3I CTNAG 5 cut(s) 174, 240, 306, 586, 633
HpySE526I ACGT 1 cut(s) 458
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 5 cut(s) 269, 599, 671, 681, 725
HspAI GCGC 1 cut(s) 236
KasI GGCGCC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 56, 336, 419
LmnI GCTCC 2 cut(s) 183, 576
Lsp1109I GCAGC 2 cut(s) 151, 700
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 352, 396
MalI GATC 3 cut(s) 58, 338, 421
MboI GATC 3 cut(s) 56, 336, 419
MboII GAAGA 1 cut(s) 707
MflI RGATCY 2 cut(s) 56, 419
MhlI GDGCHC 3 cut(s) 180, 553, 639
MluCI AATT 2 cut(s) 607, 782
Mly113I GGCGCC 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 4 cut(s) 252, 297, 371, 642
MslI CAYNNNNRTG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 170, 577
NarI GGCGCC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 677
NdeII GATC 3 cut(s) 56, 336, 419
NlaIII CATG 5 cut(s) 269, 599, 671, 681, 725
NlaIV GGNNCC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 80, 671, 815
PkrI GCNGC 2 cut(s) 166, 690
PluTI GGCGCC 1 cut(s) 239
Psp124BI GAGCTC 2 cut(s) 180, 553
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 56, 419
RsaI GTAC 2 cut(s) 440, 532
RsaNI GTAC 2 cut(s) 439, 531
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 2 cut(s) 180, 553
SaqAI TTAA 4 cut(s) 252, 297, 371, 642
SatI GCNGC 2 cut(s) 165, 689
Sau3AI GATC 3 cut(s) 56, 336, 419
ScaI AGTACT 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 3 cut(s) 180, 553, 639
SfcI CTRYAG 1 cut(s) 554
SfoI GGCGCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
Sse9I AATT 2 cut(s) 607, 782
SspDI GGCGCC 1 cut(s) 235
SspI AATATT 1 cut(s) 505
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 2 cut(s) 180, 553
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 2 cut(s) 487, 740
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 618
TasI AATT 2 cut(s) 607, 782
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 3 cut(s) 80, 671, 815
Tru1I TTAA 4 cut(s) 252, 297, 371, 642
Tru9I TTAA 4 cut(s) 252, 297, 371, 642
TseI GCWGC 2 cut(s) 164, 688
TspDTI ATGAA 4 cut(s) 221, 254, 642, 707
TspGWI ACGGA 3 cut(s) 377, 518, 666
XagI CCTNNNNNAGG 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.