Rmu_sc0012028.1_g000004

Mitochondrial K+-H+ exchange-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012028.1
OG0011394
Physical Location & Seq
Reverse (-)
6557 .. 9818
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012028.1_g000004.1.cds

Sequence Viewer

Length: 834 bp
atgagagcgagattgatagtgtttcctgttaaagggaggaactggtgttttagcagatcaattgatcctctggtttcggattctagttatggaaatactccttccactctcaaagatctctggaaaaggatctcgttcaattcaaatcccaatgttaattctagttccaatgccaatgccactgtcaatccctttgctgctaatgctgaactggtagtcgatttcatctcgaacaagatgaacaaagcttggattagtctggagaaggcgcctgagggaacctttaaaagaaagattcatggggtgggattgaagctattggctcgggtgaagccgtctgagattttcttgaaatctatcactaacgaggtctcacatgttgaagttacatacccttcaagcttaaatgcacgacttgtgcgtaggaggttacgacatattgcctcgaggggatctatcatacacaagaagtacttatacggctccgttacgttgctccctctgacatctgcatttatggttttgcctttgcctaatattcccttcttctggtgtttattccgtacttactctcattggcgagctctccagggaagcgagaagcttcttcagctagtctcagatagcccaaagactccagatggaaatggagttgagcatggaacgaaaaagttacttaattctccgtgggttttgcagccatccaaagaacttgaggaacttcttcatcagggagatgaacacaatgatctgaataagcaggctatattaaaagtctgcaaagcctttgatttgaactcgaatgatgttctaaaatacagagataccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mit_KHE1

Protein Analysis

277

Amino Acids

31.33

Weight (kDa)

9.83

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53760 AT1G53760
fragaria_vesca FvH4_6g36070 FvH4_6g36070
malus_domestica MD09G1171800.v1.1 MD17G1155200.v1.1
prunus_persica Prupe.3G030200_v2.0.a1
pyrus_communis pycom09g08910 pycom17g14800
rosa_chinensis RchiOBHm_Chr2g0148141
rosa_laevigata RLG00000020320
rosa_multiflora Rmu_sc0001516.1_g000097 Rmu_sc0012028.1_g000004
rosa_roxburghii Rroxscaffold_2G00099050
rosa_rugosa Rorug02G0403900
rosa_samantha Rh2AG462500 Rh2BG475500 Rh2CG449300 Rh2DG484200
rosa_wichuraiana Rw2G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 268
AclWI GGATC 3 cut(s) 59, 137, 460
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 473, 565
AfiI CCNNNNNNNGG 2 cut(s) 32, 549
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 7 cut(s) 139, 144, 313, 352, 383, 399, 796
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 6 cut(s) 248, 316, 402, 584, 604, 613
AluI AGCT 6 cut(s) 248, 316, 402, 584, 604, 613
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 2 cut(s) 376, 622
AlwI GGATC 3 cut(s) 59, 137, 460
Ama87I CYCGRG 2 cut(s) 324, 445
ApeKI GCWGC 2 cut(s) 197, 697
Asp700I GAANNNNTTC 1 cut(s) 723
AspLEI GCGC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 2 cut(s) 324, 445
AxyI CCTNAGG 1 cut(s) 273
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 586
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 184, 709
BccI CCATC 2 cut(s) 635, 709
BceAI ACGGC 2 cut(s) 319, 496
BciT130I CCWGG 1 cut(s) 590
BcoDI GTCTC 2 cut(s) 376, 622
BfaI CTAG 3 cut(s) 84, 162, 614
BfoI RGCGCY 1 cut(s) 272
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 198, 698
BlsI GCNGC 2 cut(s) 199, 699
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 590
BmeT110I CYCGRG 2 cut(s) 324, 445
BmiI GGNNCC 3 cut(s) 270, 280, 484
BmrFI CCNGG 1 cut(s) 590
BpmI CTGGAG 3 cut(s) 281, 572, 621
BpuEI CTTGAG 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 589, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 549
Bse1I ACTGG 2 cut(s) 47, 216
Bse21I CCTNAGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 589, 686
BseGI GGATG 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 32, 549
BseMII CTCAG 3 cut(s) 264, 330, 633
BseNI ACTGG 2 cut(s) 47, 216
BseXI GCAGC 2 cut(s) 184, 709
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 2 cut(s) 324, 445
BslI CCNNNNNNNGG 2 cut(s) 32, 549
BsmAI GTCTC 2 cut(s) 376, 622
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 2 cut(s) 324, 445
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 6 cut(s) 56, 64, 115, 129, 452, 748
BspCNI CTCAG 3 cut(s) 265, 331, 632
BspLI GGNNCC 3 cut(s) 270, 280, 484
BspPI GGATC 3 cut(s) 59, 137, 460
BspT107I GGYRCC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 376
BsrI ACTGG 2 cut(s) 47, 216
BssECI CCNNGG 2 cut(s) 589, 686
BssMI GATC 6 cut(s) 56, 64, 115, 129, 452, 748
BssNI GRCGYC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 582, 762
BstDEI CTNAG 3 cut(s) 273, 339, 619
BstDSI CCRYGG 1 cut(s) 686
BstENI CCTNNNNNAGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 6 cut(s) 59, 67, 118, 132, 455, 751
BstMAI GTCTC 2 cut(s) 376, 622
BstMBI GATC 6 cut(s) 56, 64, 115, 129, 452, 748
BstMWI GCNNNNNNNGC 2 cut(s) 203, 610
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 184, 709
BstX2I RGATCY 3 cut(s) 115, 129, 452
BstYI RGATCY 3 cut(s) 115, 129, 452
Bsu36I CCTNAGG 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 1 cut(s) 701
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 582, 762
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 472, 564
CviAII CATG 4 cut(s) 299, 377, 659, 829
CviQI GTAC 2 cut(s) 472, 564
DdeI CTNAG 3 cut(s) 273, 339, 619
DinI GGCGCC 1 cut(s) 270
DpnI GATC 6 cut(s) 58, 66, 117, 131, 454, 750
DpnII GATC 6 cut(s) 56, 64, 115, 129, 452, 748
DraI TTTAAA 1 cut(s) 286
Ecl136II GAGCTC 1 cut(s) 584
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 2 cut(s) 324, 445
EcoICRI GAGCTC 1 cut(s) 584
EcoNI CCTNNNNNAGG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 586
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 4 cut(s) 302, 380, 662, 832
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 4 cut(s) 298, 376, 658, 828
Fnu4HI GCNGC 2 cut(s) 198, 698
FokI GGATG 1 cut(s) 688
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 2 cut(s) 198, 698
FspBI CTAG 3 cut(s) 84, 162, 614
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 198, 698
GsuI CTGGAG 3 cut(s) 281, 572, 621
HaeII RGCGCY 1 cut(s) 272
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 4 cut(s) 302, 380, 662, 832
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 3 cut(s) 246, 400, 602
HinfI GANTC 3 cut(s) 80, 295, 634
HphI GGTGA 1 cut(s) 340
Hpy188I TCNGA 5 cut(s) 79, 340, 504, 622, 753
Hpy188III TCNNGA 5 cut(s) 121, 229, 260, 349, 638
HpyAV CCTTC 4 cut(s) 111, 259, 405, 553
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 4 cut(s) 410, 512, 697, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 610
HpyF3I CTNAG 3 cut(s) 273, 339, 619
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 4 cut(s) 302, 380, 662, 832
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
Kzo9I GATC 6 cut(s) 56, 64, 115, 129, 452, 748
LmnI GCTCC 2 cut(s) 488, 501
Lsp1109I GCAGC 2 cut(s) 184, 709
MaeI CTAG 3 cut(s) 84, 162, 614
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 4 cut(s) 385, 429, 487, 672
MalI GATC 6 cut(s) 58, 66, 117, 131, 454, 750
MboI GATC 6 cut(s) 56, 64, 115, 129, 452, 748
MboII GAAGA 3 cut(s) 538, 599, 716
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 3 cut(s) 115, 129, 452
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 4 cut(s) 60, 139, 157, 679
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 1 cut(s) 628
MnlI CCTC 9 cut(s) 30, 78, 268, 361, 420, 441, 454, 510, 709
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 6 cut(s) 30, 156, 285, 404, 678, 770
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 203, 610
NarI GGCGCC 1 cut(s) 269
NdeII GATC 6 cut(s) 56, 64, 115, 129, 452, 748
NlaIII CATG 4 cut(s) 302, 380, 662, 832
NlaIV GGNNCC 3 cut(s) 270, 280, 484
NspI RCATGY 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 445
PciI ACATGT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 80, 295
PkrI GCNGC 2 cut(s) 199, 699
PleI GAGTC 1 cut(s) 628
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 628
PscI ACATGT 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 270, 280, 484
PspXI VCTCGAGB 1 cut(s) 445
PsuI RGATCY 3 cut(s) 115, 129, 452
RsaI GTAC 2 cut(s) 473, 565
RsaNI GTAC 2 cut(s) 472, 564
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 6 cut(s) 30, 156, 285, 404, 678, 770
SatI GCNGC 2 cut(s) 198, 698
Sau3AI GATC 6 cut(s) 56, 64, 115, 129, 452, 748
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 586
SfoI GGCGCC 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 445
SmlI CTYRAG 2 cut(s) 445, 713
SmoI CTYRAG 2 cut(s) 445, 713
Sse9I AATT 4 cut(s) 60, 139, 157, 679
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 538
SspMI CTAG 3 cut(s) 84, 162, 614
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 1 cut(s) 588
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 494
TaqI TCGA 4 cut(s) 219, 230, 446, 800
TasI AATT 4 cut(s) 60, 139, 157, 679
TatI WGTACW 1 cut(s) 471
TfiI GAWTC 2 cut(s) 80, 295
Tru1I TTAA 6 cut(s) 30, 156, 285, 404, 678, 770
Tru9I TTAA 6 cut(s) 30, 156, 285, 404, 678, 770
TscAI CASTG 1 cut(s) 187
TseI GCWGC 2 cut(s) 197, 697
TspDTI ATGAA 5 cut(s) 214, 254, 287, 716, 753
TspGWI ACGGA 3 cut(s) 475, 551, 675
TspRI CASTG 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 30
XceI RCATGY 1 cut(s) 380
XhoI CTCGAG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 3 cut(s) 84, 162, 614
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.