Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Reverse (-)

33576380 .. 33583137

Gene Structure 6758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGATTTGTTCCAGCCAGCAAACATGATGGAAGCTGGAGGTCATTTCGGAAACCCACTGGAGATGATAGCTACTCAGAACACATCAGAAAGCGAGCTGAATGCACGTTTAGGTGATGATTTCGACAGTGCTACAAAATCTGGCAGCGAGAACCTGGAAGGAGGTGGCTCCGGCGACGATGGACAAGACCCTCGCCCTAACAAGAAGAAGCGGTATCACCGTCACACCCAGCATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGTCGAGAGTTAGGTTTGGAACCTTTACAGGTTAAATTTTGGTTCCAAAACAAGCGCACCCAAATGAAGACGCAGCACGAGAGGCATGAGAACACAAACCTTCGTAATGAAAATGAAAAGCTAAGAGCTGATAACATGAGATATCGAGAGGCACTGAGCAATGCATCATGTCCTAATTGCGGAGGCCCAACGGCTATTGGAGAGATGTCATTCGATGAACATCATTTGAGACTTGAAAATGCCCGATTAAGAGAAGAGATTGATAGAATATCAGCAATTGCTGCTAAATACGTTGGCAAGCCAGTGGGGAACTATCCTCATATGTCTTCACCAGTTCCACCTCACCGCAGTCCACTTGATCTTGGAGTGGGAAACATGGGAACCAGTCCTCACGGCTTCTTATTAAACTCAGACATGTATACCTCTGGAGACATTATGCGGTCAATCGGTGCACCAAGTGAGGCAGATAAGCCCATGATTATTGAGCTTGCAGTTCAAGCGATGGAGGAGCTAATTCGAATGGCTCAAATTGGCGAACCTTTGTGGATGAATAGCATTGATGGATCAACCACTGTGCTCAATGAGGATGAGTATATTCGAACATTTCCTCGAGGAATTGTACCAAAGCAATCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCATAATAACCTTGTTGAAATTCTCATGGATGTGAATCAATGGTCAACTGTGTTTTCGGGGATTGTATCAAGAGCTATGACACTGGATGTGCTATCAACTGGAGTAGCAGGAAATTACAATGGAGCATTGCAAGTGATGACAGCAGAATTCCAAGTACCTTCTCCATTGGTTCCAACTCGAGAGAGTTATTTTGTGAGGTACTGTAAGCAGCATGTCGATGGCACTTGGGCAGTAGTTGATGTCTCCTTGGACAACCAACGCGGCTATACATCTACTCTGAAATCCTGTCAAAGAAGACCTTCTGGTTGTCTCATCCAAGAAATGCCAAATGGATACTCAAAGGTTACTTGGATTGAGCATGTTGAGGTGGATGAAAGAGGTGTTCACAATCTGTACAAGCAACTGGTTAACTCGGGGAATGCATTTGGTGCAAAACGATGGGTGGCAACCTTGGATCGCCAATGTGAGCGTCTTGCCAGCGCCTTGGCGACAAACATCCCTACTGGTGATGTTGGTGTGATAACAACTCAAGAAGGGAGGAAGAGCATGCTGAAGCTGGCCGAGAGAATGGTTATTAGTTTCTGTGCTGGAGTGAGTGCATCTACCACTCATACATGGACCACATTGTCTGGAACAGGGGCTGATGATGTTCGTGTGATGACCCGAAAGAGTGTTGATGATCCAGGAAGGCCTCCGGGTATTGTGCTTAGCGCTGCTACCTCATTCTGGCTTCCTGTGCCTCCCAAAAAGGTGTTTGAGTTCCTTCGTGATGAGAACTCCAGAAATGAGTGGGATATCCTCTCCAACGGTGGCGTTGTGCAAGAAATGGCGCACATAGCCAACGGGCGTGACACCGGGAACTGCGTGTCACTTCTTCGTGTAAATAGTGCCAATTCTAGTCAGAGCAACATGCTCATTCTGCAGGAAAGCTGCACTGACTCAACGGCATCATATGTCATCTATGCCCCTGTGGACATAGTTGCCATGAATGTCGTTCTGAATGGCAGTGACCCGGACTATGTTGCCCTGCTACCATCTGGGTTCGCCATACTCCCAGATGGAACTAGCGGGAGCAACAGCGGGGAAGCTGAATCTGGAGGGTCCTTGTTGACTGTTGCCTTCCAGATCCTGGTGGATTCAGTTCCCACCGCAAAGCTGTCCCTGGGGTCTGTGGCAACAGTCAACAACCTCATAGCGTGCACAGTGGAGAGGATCAAGGCCTCATTGTCCTTGGACAACGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

744

Amino Acids

81.49

Weight (kDa)

5.45

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	69 - 124	1e-18	Homeodomain
START	PF01852	264 - 485	2.3e-53	START domain
PDF2_C	PF25797	504 - 738	6.1e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1609
AbsI	CCTCGAGG	1 cut(s)	912
AccB7I	CCANNNNNTGG	2 cut(s)	247, 2113
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	2 cut(s)	958, 1245
AciI	CCGC	9 cut(s)	211, 483, 649, 742, 958, 1245, 2052, 2064, 2133
AclWI	GGATC	6 cut(s)	232, 874, 1446, 1658, 2104, 2204
AcoI	YGGCCR	1 cut(s)	1542
AcsI	RAATTY	3 cut(s)	338, 1002, 1130
AcuI	CTGAAG	1 cut(s)	1556
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	4 cut(s)	924, 1140, 1184, 1379
AfeI	AGCGCT	1 cut(s)	1696
AfiI	CCNNNNNNNGG	4 cut(s)	247, 482, 1710, 2113
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	5 cut(s)	262, 539, 800, 943, 1001
AjnI	CCWGG	4 cut(s)	153, 1666, 2112, 2145
Alw21I	GWGCWC	3 cut(s)	757, 882, 2186
Alw26I	GTCTC	4 cut(s)	526, 726, 1231, 1298
Alw44I	GTGCAC	2 cut(s)	753, 2182
AlwI	GGATC	6 cut(s)	232, 874, 1446, 1658, 2104, 2204
AlwNI	CAGNNNCTG	2 cut(s)	1625, 2113
Ama87I	CYCGRG	3 cut(s)	912, 1161, 1396
Aor51HI	AGCGCT	1 cut(s)	1696
AoxI	GGCC	4 cut(s)	487, 1542, 1673, 2202
ApaLI	GTGCAC	2 cut(s)	753, 2182
ApeKI	GCWGC	6 cut(s)	144, 376, 584, 1192, 1697, 1914
ApoI	RAATTY	3 cut(s)	338, 1002, 1130
Asp700I	GAANNNNTTC	1 cut(s)	1282
AspLEI	GCGC	4 cut(s)	360, 1466, 1697, 1816
AspS9I	GGNCC	3 cut(s)	488, 1602, 2085
AsuC2I	CCSGG	3 cut(s)	1680, 1840, 1997
AsuHPI	GGTGA	5 cut(s)	125, 209, 624, 638, 1502
AsuII	TTCGAA	2 cut(s)	820, 901
AvaI	CYCGRG	3 cut(s)	912, 1161, 1396
AvaII	GGWCC	2 cut(s)	1602, 2085
BaeGI	GKGCMC	2 cut(s)	757, 2186
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	3 cut(s)	377, 621, 1285
Bbv12I	GWGCWC	3 cut(s)	757, 882, 2186
BbvI	GCAGC	6 cut(s)	156, 388, 571, 1204, 1684, 1901
BccI	CCATC	8 cut(s)	22, 173, 799, 857, 1196, 1416, 2026, 2036
BceAI	ACGGC	3 cut(s)	510, 712, 1944
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	4 cut(s)	155, 1668, 2114, 2147
BciVI	GTATCC	1 cut(s)	1310
BcnI	CCSGG	3 cut(s)	1680, 1840, 1997
BcoDI	GTCTC	4 cut(s)	526, 726, 1231, 1298
BfaI	CTAG	2 cut(s)	1881, 2049
BfmI	CTRYAG	1 cut(s)	1904
BfoI	RGCGCY	2 cut(s)	1467, 1698
BfuI	GTATCC	1 cut(s)	1310
BisI	GCNGC	7 cut(s)	145, 377, 585, 1193, 1246, 1698, 1915
BlpI	GCTNAGC	1 cut(s)	1691
BlsI	GCNGC	7 cut(s)	146, 378, 586, 1194, 1247, 1699, 1916
Bme1390I	CCNGG	7 cut(s)	155, 1668, 1680, 1840, 1997, 2114, 2147
Bme18I	GGWCC	2 cut(s)	1602, 2085
BmeT110I	CYCGRG	3 cut(s)	912, 1161, 1396
BmgT120I	GGNCC	3 cut(s)	488, 1602, 2085
BmiI	GGNNCC	6 cut(s)	169, 324, 347, 685, 1155, 2086
BmrFI	CCNGG	7 cut(s)	155, 1668, 1680, 1840, 1997, 2114, 2147
BmsI	GCATC	4 cut(s)	241, 476, 1592, 1940
BpiI	GAAGAC	3 cut(s)	377, 621, 1285
BpmI	CTGGAG	7 cut(s)	57, 80, 750, 1104, 1593, 1747, 2100
Bpu1102I	GCTNAGC	1 cut(s)	1691
Bpu14I	TTCGAA	2 cut(s)	820, 901
BpuEI	CTTGAG	1 cut(s)	1497
BpuMI	CCSGG	3 cut(s)	1680, 1840, 1997
BsaBI	GATNNNNATC	2 cut(s)	522, 1017
BsaJI	CCNNGG	6 cut(s)	1230, 1434, 1467, 2145, 2146, 2214
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 482, 1710, 2113
Bse1I	ACTGG	8 cut(s)	63, 605, 635, 687, 1071, 1087, 1392, 1492
Bse3DI	GCAATG	2 cut(s)	469, 1109
Bse8I	GATNNNNATC	2 cut(s)	522, 1017
BseBI	CCWGG	4 cut(s)	155, 1668, 2114, 2147
BseDI	CCNNGG	6 cut(s)	1230, 1434, 1467, 2145, 2146, 2214
BseGI	GGATG	7 cut(s)	855, 895, 1018, 1075, 1296, 1360, 1479
BseJI	GATNNNNATC	2 cut(s)	522, 1017
BseLI	CCNNNNNNNGG	4 cut(s)	247, 482, 1710, 2113
BseMI	GCAATG	2 cut(s)	469, 1109
BseMII	CTCAG	4 cut(s)	89, 293, 449, 726
BseNI	ACTGG	8 cut(s)	63, 605, 635, 687, 1071, 1087, 1392, 1492
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	2 cut(s)	757, 2186
BseXI	GCAGC	6 cut(s)	156, 388, 571, 1204, 1684, 1901
BseYI	CCCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	1900
Bsh1236I	CGCG	2 cut(s)	958, 1245
BshFI	GGCC	4 cut(s)	489, 1544, 1675, 2204
BsiHKAI	GWGCWC	3 cut(s)	757, 882, 2186
BsiHKCI	CYCGRG	3 cut(s)	912, 1161, 1396
BsiSI	CCGG	4 cut(s)	171, 1679, 1839, 1997
BslFI	GGGAC	1 cut(s)	2128
BslI	CCNNNNNNNGG	4 cut(s)	247, 482, 1710, 2113
BsmAI	GTCTC	4 cut(s)	526, 726, 1231, 1298
BsmFI	GGGAC	1 cut(s)	2128
BsmI	GAATGC	2 cut(s)	106, 1408
BsnI	GGCC	4 cut(s)	489, 1544, 1675, 2204
BsoBI	CYCGRG	3 cut(s)	912, 1161, 1396
Bsp119I	TTCGAA	2 cut(s)	820, 901
Bsp1286I	GDGCHC	3 cut(s)	757, 882, 2186
Bsp1407I	TGTACA	1 cut(s)	1377
Bsp143I	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
Bsp1720I	GCTNAGC	1 cut(s)	1691
BspACI	CCGC	9 cut(s)	211, 483, 649, 742, 958, 1245, 2052, 2064, 2133
BspANI	GGCC	4 cut(s)	489, 1544, 1675, 2204
BspCNI	CTCAG	4 cut(s)	88, 294, 450, 725
BspFNI	CGCG	2 cut(s)	958, 1245
BspLI	GGNNCC	6 cut(s)	169, 324, 347, 685, 1155, 2086
BspMAI	CTGCAG	1 cut(s)	1908
BspPI	GGATC	6 cut(s)	232, 874, 1446, 1658, 2104, 2204
BspQI	GCTCTTC	1 cut(s)	1520
BspT104I	TTCGAA	2 cut(s)	820, 901
BsrDI	GCAATG	2 cut(s)	469, 1109
BsrGI	TGTACA	1 cut(s)	1377
BsrI	ACTGG	8 cut(s)	63, 605, 635, 687, 1071, 1087, 1392, 1492
BssECI	CCNNGG	6 cut(s)	1230, 1434, 1467, 2145, 2146, 2214
BssMI	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
BssNAI	GTATAC	1 cut(s)	723
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
Bst1107I	GTATAC	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	4 cut(s)	155, 1668, 2114, 2147
Bst4CI	ACNGT	9 cut(s)	128, 221, 877, 1033, 1187, 1793, 2098, 2164, 2188
Bst6I	CTCTTC	2 cut(s)	552, 1520
BstAPI	GCANNNNNTGC	2 cut(s)	584, 1412
BstAUI	TGTACA	1 cut(s)	1377
BstBI	TTCGAA	2 cut(s)	820, 901
BstC8I	GCNNGC	8 cut(s)	18, 95, 602, 792, 1462, 1532, 1542, 2182
BstDEI	CTNAG	6 cut(s)	75, 302, 425, 458, 712, 1691
BstF5I	GGATG	7 cut(s)	855, 895, 1018, 1075, 1296, 1360, 1479
BstFNI	CGCG	2 cut(s)	958, 1245
BstH2I	RGCGCY	2 cut(s)	1467, 1698
BstHHI	GCGC	4 cut(s)	360, 1466, 1697, 1816
BstKTI	GATC	7 cut(s)	240, 664, 869, 1441, 1666, 2112, 2199
BstMAI	GTCTC	4 cut(s)	526, 726, 1231, 1298
BstMBI	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
BstMWI	GCNNNNNNNGC	7 cut(s)	385, 584, 800, 1412, 1720, 1820, 1903
BstNI	CCWGG	4 cut(s)	155, 1668, 2114, 2147
BstNSI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
BstSCI	CCNGG	7 cut(s)	153, 1666, 1678, 1838, 1995, 2112, 2145
BstSFI	CTRYAG	1 cut(s)	1904
BstSLI	GKGCMC	2 cut(s)	757, 2186
BstUI	CGCG	2 cut(s)	958, 1245
BstV1I	GCAGC	6 cut(s)	156, 388, 571, 1204, 1684, 1901
BstV2I	GAAGAC	3 cut(s)	377, 621, 1285
BstX2I	RGATCY	2 cut(s)	237, 2109
BstXI	CCANNNNNNTGG	1 cut(s)	1468
BstYI	RGATCY	2 cut(s)	237, 2109
BstZ17I	GTATAC	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	1310
BsuRI	GGCC	4 cut(s)	489, 1544, 1675, 2204
BtgZI	GCGATG	1 cut(s)	818
BtsCI	GGATG	7 cut(s)	855, 895, 1018, 1075, 1296, 1360, 1479
BtsI	GCAGTG	1 cut(s)	1996
BtsIMutI	CAGTG	9 cut(s)	56, 133, 455, 612, 873, 1064, 1917, 1996, 2193
Cac8I	GCNNGC	8 cut(s)	18, 95, 602, 792, 1462, 1532, 1542, 2182
CaiI	CAGNNNCTG	2 cut(s)	1625, 2113
CfoI	GCGC	4 cut(s)	360, 1466, 1697, 1816
Cfr13I	GGNCC	3 cut(s)	488, 1602, 2085
CseI	GACGC	2 cut(s)	382, 1442
Csp6I	GTAC	4 cut(s)	923, 1139, 1183, 1378
CviQI	GTAC	4 cut(s)	923, 1139, 1183, 1378
DdeI	CTNAG	6 cut(s)	75, 302, 425, 458, 712, 1691
DpnI	GATC	7 cut(s)	239, 663, 868, 1440, 1665, 2111, 2198
DpnII	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
DraIII	CACNNNGTG	1 cut(s)	761
DrdI	GACNNNNNNGTC	1 cut(s)	1609
DseDI	GACNNNNNNGTC	1 cut(s)	1609
EaeI	YGGCCR	1 cut(s)	1542
Eam1104I	CTCTTC	2 cut(s)	552, 1520
EarI	CTCTTC	2 cut(s)	552, 1520
Eco130I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
Eco147I	AGGCCT	2 cut(s)	1675, 2204
Eco32I	GATATC	2 cut(s)	446, 1780
Eco47I	GGWCC	2 cut(s)	1602, 2085
Eco47III	AGCGCT	1 cut(s)	1696
Eco57I	CTGAAG	1 cut(s)	1556
Eco88I	CYCGRG	3 cut(s)	912, 1161, 1396
EcoO109I	RGGNCCY	1 cut(s)	2085
EcoRI	GAATTC	1 cut(s)	1130
EcoRII	CCWGG	4 cut(s)	153, 1666, 2112, 2145
EcoRV	GATATC	2 cut(s)	446, 1780
EcoT14I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
EcoT22I	ATGCAT	2 cut(s)	469, 1408
ErhI	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
FalI	AAGNNNNNCTT	2 cut(s)	1267, 1299
FaqI	GGGAC	1 cut(s)	2128
FauI	CCCGC	3 cut(s)	951, 2045, 2057
FauNDI	CATATG	2 cut(s)	624, 1936
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	7 cut(s)	145, 377, 585, 1193, 1246, 1698, 1915
FokI	GGATG	7 cut(s)	862, 902, 1025, 1082, 1283, 1367, 1466
Fsp4HI	GCNGC	7 cut(s)	145, 377, 585, 1193, 1246, 1698, 1915
FspBI	CTAG	2 cut(s)	1881, 2049
GlaI	GCGC	4 cut(s)	359, 1465, 1696, 1815
GluI	GCNGC	7 cut(s)	145, 377, 585, 1193, 1246, 1698, 1915
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	7 cut(s)	57, 80, 750, 1104, 1593, 1747, 2100
HaeII	RGCGCY	2 cut(s)	1467, 1698
HaeIII	GGCC	4 cut(s)	489, 1544, 1675, 2204
HapII	CCGG	4 cut(s)	171, 1679, 1839, 1997
HgaI	GACGC	2 cut(s)	382, 1442
HhaI	GCGC	4 cut(s)	360, 1466, 1697, 1816
Hin6I	GCGC	4 cut(s)	358, 1464, 1695, 1814
HinP1I	GCGC	4 cut(s)	358, 1464, 1695, 1814
HincII	GTYRAC	4 cut(s)	1029, 1393, 2094, 2167
HindII	GTYRAC	4 cut(s)	1029, 1393, 2094, 2167
HindIII	AAGCTT	2 cut(s)	252, 951
HinfI	GANTC	6 cut(s)	304, 939, 1018, 1922, 2075, 2120
HpaI	GTTAAC	1 cut(s)	1393
HpaII	CCGG	4 cut(s)	171, 1679, 1839, 1997
HphI	GGTGA	5 cut(s)	125, 209, 624, 638, 1502
Hpy188I	TCNGA	8 cut(s)	50, 78, 88, 237, 715, 1263, 1887, 1983
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	9 cut(s)	152, 289, 413, 1152, 1293, 1511, 1665, 1757, 2113
HpyCH4III	ACNGT	9 cut(s)	128, 221, 877, 1033, 1187, 1793, 2098, 2164, 2188
HpyCH4IV	ACGT	2 cut(s)	106, 594
HpyF10VI	GCNNNNNNNGC	7 cut(s)	385, 584, 800, 1412, 1720, 1820, 1903
HpyF3I	CTNAG	6 cut(s)	75, 302, 425, 458, 712, 1691
HpySE526I	ACGT	2 cut(s)	106, 594
HspAI	GCGC	4 cut(s)	358, 1464, 1695, 1814
KspAI	GTTAAC	1 cut(s)	1393
Kzo9I	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
LguI	GCTCTTC	1 cut(s)	1520
LmnI	GCTCC	4 cut(s)	173, 811, 1106, 2055
Lsp1109I	GCAGC	6 cut(s)	156, 388, 571, 1204, 1684, 1901
LweI	GCATC	4 cut(s)	241, 476, 1592, 1940
MaeI	CTAG	2 cut(s)	1881, 2049
MaeII	ACGT	2 cut(s)	106, 594
MaeIII	GTNAC	5 cut(s)	221, 1327, 1832, 1851, 1991
MalI	GATC	7 cut(s)	239, 663, 868, 1440, 1665, 2111, 2198
MboI	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
MboII	GAAGA	8 cut(s)	217, 250, 382, 569, 621, 1290, 1537, 1850
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	2 cut(s)	237, 2109
MhlI	GDGCHC	3 cut(s)	757, 882, 2186
MlyI	GAGTC	2 cut(s)	313, 1916
MmeI	TCCRAC	2 cut(s)	1181, 1812
Mph1103I	ATGCAT	2 cut(s)	469, 1408
MroXI	GAANNNNTTC	1 cut(s)	1282
MseI	TTAA	4 cut(s)	336, 551, 707, 1392
MslI	CAYNNNNRTG	4 cut(s)	279, 365, 1013, 1200
MspA1I	CMGCKG	1 cut(s)	2064
MspI	CCGG	4 cut(s)	171, 1679, 1839, 1997
MspR9I	CCNGG	7 cut(s)	155, 1668, 1680, 1840, 1997, 2114, 2147
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	106, 1408
MvaI	CCWGG	4 cut(s)	155, 1668, 2114, 2147
MvnI	CGCG	2 cut(s)	958, 1245
MwoI	GCNNNNNNNGC	7 cut(s)	385, 584, 800, 1412, 1720, 1820, 1903
NciI	CCSGG	3 cut(s)	1680, 1840, 1997
NdeI	CATATG	2 cut(s)	624, 1936
NdeII	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
NlaIV	GGNNCC	6 cut(s)	169, 324, 347, 685, 1155, 2086
NmeAIII	GCCGAG	1 cut(s)	1570
NmuCI	GTSAC	4 cut(s)	221, 1832, 1851, 1991
NsiI	ATGCAT	2 cut(s)	469, 1408
NspI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
NspV	TTCGAA	2 cut(s)	820, 901
PaeI	GCATGC	1 cut(s)	1534
PaeR7I	CTCGAG	2 cut(s)	912, 1161
PasI	CCCWGGG	1 cut(s)	2146
PceI	AGGCCT	2 cut(s)	1675, 2204
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	1520
PctI	GAATGC	2 cut(s)	106, 1408
PdmI	GAANNNNTTC	1 cut(s)	1282
PfeI	GAWTC	4 cut(s)	939, 1018, 2075, 2120
PflMI	CCANNNNNTGG	2 cut(s)	247, 2113
PfoI	TCCNGGA	1 cut(s)	1666
PkrI	GCNGC	7 cut(s)	146, 378, 586, 1194, 1247, 1699, 1916
PleI	GAGTC	2 cut(s)	312, 1916
PpsI	GAGTC	2 cut(s)	312, 1916
PpuMI	RGGWCCY	1 cut(s)	2085
PscI	ACATGT	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	2085
Psp6I	CCWGG	4 cut(s)	153, 1666, 2112, 2145
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	4 cut(s)	153, 1666, 2112, 2145
PspN4I	GGNNCC	6 cut(s)	169, 324, 347, 685, 1155, 2086
PspPI	GGNCC	3 cut(s)	488, 1602, 2085
PspPPI	RGGWCCY	1 cut(s)	2085
PspXI	VCTCGAGB	1 cut(s)	912
PstI	CTGCAG	1 cut(s)	1908
PstNI	CAGNNNCTG	2 cut(s)	1625, 2113
PsuI	RGATCY	2 cut(s)	237, 2109
RsaI	GTAC	4 cut(s)	924, 1140, 1184, 1379
RsaNI	GTAC	4 cut(s)	923, 1139, 1183, 1378
RseI	CAYNNNNRTG	4 cut(s)	279, 365, 1013, 1200
SapI	GCTCTTC	1 cut(s)	1520
SaqAI	TTAA	4 cut(s)	336, 551, 707, 1392
SatI	GCNGC	7 cut(s)	145, 377, 585, 1193, 1246, 1698, 1915
Sau3AI	GATC	7 cut(s)	237, 661, 866, 1438, 1663, 2109, 2196
Sau96I	GGNCC	3 cut(s)	488, 1602, 2085
SchI	GAGTC	2 cut(s)	313, 1916
ScrFI	CCNGG	7 cut(s)	155, 1668, 1680, 1840, 1997, 2114, 2147
SduI	GDGCHC	3 cut(s)	757, 882, 2186
SfaNI	GCATC	4 cut(s)	241, 476, 1592, 1940
SfcI	CTRYAG	1 cut(s)	1904
Sfr274I	CTCGAG	2 cut(s)	912, 1161
SfuI	TTCGAA	2 cut(s)	820, 901
SinI	GGWCC	2 cut(s)	1602, 2085
SlaI	CTCGAG	2 cut(s)	912, 1161
SmiMI	CAYNNNNRTG	4 cut(s)	279, 365, 1013, 1200
SmlI	CTYRAG	3 cut(s)	912, 1161, 1512
SmoI	CTYRAG	3 cut(s)	912, 1161, 1512
SphI	GCATGC	1 cut(s)	1534
SseBI	AGGCCT	2 cut(s)	1675, 2204
SsiI	CCGC	9 cut(s)	211, 483, 649, 742, 958, 1245, 2052, 2064, 2133
SspMI	CTAG	2 cut(s)	1881, 2049
StuI	AGGCCT	2 cut(s)	1675, 2204
StyD4I	CCNGG	7 cut(s)	153, 1666, 1678, 1838, 1995, 2112, 2145
StyI	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
TaaI	ACNGT	9 cut(s)	128, 221, 877, 1033, 1187, 1793, 2098, 2164, 2188
TaiI	ACGT	2 cut(s)	109, 597
TaqI	TCGA	9 cut(s)	123, 307, 448, 516, 820, 901, 913, 1162, 1200
TatI	WGTACW	1 cut(s)	1377
TauI	GCSGC	1 cut(s)	1248
TfiI	GAWTC	4 cut(s)	939, 1018, 2075, 2120
Tru1I	TTAA	4 cut(s)	336, 551, 707, 1392
Tru9I	TTAA	4 cut(s)	336, 551, 707, 1392
TscAI	CASTG	9 cut(s)	63, 133, 462, 612, 880, 1071, 1924, 1996, 2193
TseFI	GTSAC	4 cut(s)	221, 1832, 1851, 1991
TseI	GCWGC	6 cut(s)	144, 376, 584, 1192, 1697, 1914
Tsp45I	GTSAC	4 cut(s)	221, 1832, 1851, 1991
TspDTI	ATGAA	8 cut(s)	383, 426, 432, 534, 866, 995, 1371, 1985
TspRI	CASTG	9 cut(s)	63, 133, 462, 612, 880, 1071, 1924, 1996, 2193
Van91I	CCANNNNNTGG	2 cut(s)	247, 2113
VneI	GTGCAC	2 cut(s)	753, 2182
VpaK11BI	GGWCC	2 cut(s)	1602, 2085
XapI	RAATTY	3 cut(s)	338, 1002, 1130
XceI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
XhoI	CTCGAG	2 cut(s)	912, 1161
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	1282
XspI	CTAG	2 cut(s)	1881, 2049
Zsp2I	ATGCAT	2 cut(s)	469, 1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.