Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Reverse (-)

15724666 .. 15730561

Gene Structure 5896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAATACTTCAGGAGACATTATGGGGTCAATCAGTGCACCTAGTGAGGCAGATAAGCCCATGATTATTGAGCTTGCATTTGTAGCTATGGAAGGGCTAATCCGAATGGCTCAAATTGGCGAGCCTTTGTGGATGAATAGCATTGATGGATCAACCACTGTGCTCAATGAGGATGAGTACATTCGAACATGTCATAGTGGAATTGTGCCGAAACAACCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCGCAATAAGCTTGTTGAGATTCTCATGGATGTGAATCGATGGTCAACTGGATTTTTGGGGATGGTATCAAGAGCTAAGACTCTGGATGCGCTATCCACTGGAGTAGCCGGAAACTACAATGGAGCCTTGCAAGTGATAACAGCAGAATTTCAAGTACCATCTCCACTGGTTACTTGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACGATCTGTACAAGCAGTTGGTCAACTCTGGCCACGCATTCGGGGAAAAAAGATGGGTTGCGACCTTGGACCGCCAATGTGAGCGTCTCGCCAGAGCCTTGGCGACAAACATCCCTACCGTGACAACAACTCAAGAAGGGAGGAAGAGCATGTTGAAGCTGGCCGAGAGAATGGTTATAAATTTTTGTGCCGGAGTGAGTGAGAGTGCATCTACCACTCATACATGGACGACGCTGTCTCGAACAGGGGCTGATGATGTTCGTGTGATGACCCGAAAGAGTGTGGATGATCCAGGAAGGCCTCAGGGCATTGTGCTCACTGCAGCAACCTCATTCTGGCTTCCTGTTCCCCGCAAAAGGGTCTTTGAGTTCCTTCGTGATAAGAACTCTCGAAATAAGATGGTACCTTTCGTTTTCAAGGTGTGCAGACACCTATTTTGCCATCTATCTACAGGTCCTTATTCCAGCCAAAGGAAGCTTCTCACGCACGCAAACCTATCATACTGCGTAATAGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

332

Amino Acids

36.89

Weight (kDa)

8.65

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	25 - 146	3.4e-12	START domain
START	PF01852	146 - 188	7.6e-09	START domain
PDF2_C	PF25797	203 - 293	3.4e-32	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
AasI	GACNNNNNNGTC	1 cut(s)	712
Acc65I	GGTACC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	880
AccII	CGCG	1 cut(s)	241
AciI	CCGC	4 cut(s)	241, 268, 550, 829
AclWI	GGATC	2 cut(s)	157, 761
AcoI	YGGCCR	2 cut(s)	508, 639
AcsI	RAATTY	2 cut(s)	413, 658
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	179, 423, 488, 882
AfiI	CCNNNNNNNGG	4 cut(s)	813, 834, 835, 948
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	226, 419, 634, 895
AjnI	CCWGG	2 cut(s)	217, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	939, 971
AluBI	AGCT	7 cut(s)	73, 86, 236, 277, 341, 637, 955
AluI	AGCT	7 cut(s)	73, 86, 236, 277, 341, 637, 955
Alw21I	GWGCWC	3 cut(s)	40, 165, 795
Alw26I	GTCTC	3 cut(s)	9, 569, 720
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	157, 761
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	508, 639, 776
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	2 cut(s)	413, 658
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
Asp718I	GGTACC	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	547, 932
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	547, 932
AxyI	CCTNAGG	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	880
Bbv12I	GWGCWC	3 cut(s)	40, 165, 795
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	7 cut(s)	140, 300, 322, 433, 525, 871, 927
BciT130I	CCWGG	2 cut(s)	219, 771
BcoDI	GTCTC	3 cut(s)	9, 569, 720
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	798, 927
BisI	GCNGC	1 cut(s)	801
BlsI	GCNGC	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	219, 771
Bme18I	GGWCC	2 cut(s)	547, 932
BmgT120I	GGNCC	2 cut(s)	547, 932
BmiI	GGNNCC	2 cut(s)	391, 882
BmrFI	CCNGG	2 cut(s)	219, 771
BmsI	GCATC	2 cut(s)	343, 695
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	543, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	813, 834, 835, 948
Bse1I	ACTGG	3 cut(s)	319, 370, 438
Bse21I	CCTNAGG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	219, 771
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	543, 576
BseGI	GGATG	8 cut(s)	138, 178, 301, 333, 358, 469, 588, 769
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	4 cut(s)	813, 834, 835, 948
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	3 cut(s)	319, 370, 438
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	510, 641, 778
BshNI	GGYRCC	1 cut(s)	880
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	3 cut(s)	40, 165, 795
BsiSI	CCGG	2 cut(s)	375, 669
BslI	CCNNNNNNNGG	4 cut(s)	813, 834, 835, 948
BsmAI	GTCTC	3 cut(s)	9, 569, 720
BsmBI	CGTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	510, 641, 778
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	40, 165, 795
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	149, 481, 766
BspACI	CCGC	4 cut(s)	241, 268, 550, 829
BspANI	GGCC	3 cut(s)	510, 641, 778
BspCNI	CTCAG	1 cut(s)	793
BspDI	ATCGAT	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	391, 882
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	2 cut(s)	157, 761
BspQI	GCTCTTC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	880
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	319, 370, 438
BssECI	CCNNGG	2 cut(s)	543, 576
BssMI	GATC	3 cut(s)	149, 481, 766
BssT1I	CCWWGG	2 cut(s)	543, 576
Bst2UI	CCWGG	2 cut(s)	219, 771
Bst4CI	ACNGT	2 cut(s)	160, 598
Bst6I	CTCTTC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	486
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	75, 122, 639, 966
BstDEI	CTNAG	2 cut(s)	342, 780
BstF5I	GGATG	8 cut(s)	138, 178, 301, 333, 358, 469, 588, 769
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	152, 484, 769
BstMAI	GTCTC	3 cut(s)	9, 569, 720
BstMBI	GATC	3 cut(s)	149, 481, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 961
BstNI	CCWGG	2 cut(s)	219, 771
BstNSI	RCATGY	3 cut(s)	192, 455, 631
BstSCI	CCNGG	2 cut(s)	217, 769
BstSFI	CTRYAG	2 cut(s)	798, 927
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	577
Bsu15I	ATCGAT	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	510, 641, 778
BsuTUI	ATCGAT	1 cut(s)	304
BtsCI	GGATG	8 cut(s)	138, 178, 301, 333, 358, 469, 588, 769
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	5 cut(s)	40, 156, 363, 431, 795
Cac8I	GCNNGC	4 cut(s)	75, 122, 639, 966
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	547, 932
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	2 cut(s)	551, 718
Csp6I	GTAC	4 cut(s)	178, 422, 487, 881
CviAII	CATG	6 cut(s)	61, 189, 292, 452, 628, 702
CviQI	GTAC	4 cut(s)	178, 422, 487, 881
DdeI	CTNAG	2 cut(s)	342, 780
DpnI	GATC	3 cut(s)	151, 483, 768
DpnII	GATC	3 cut(s)	149, 481, 766
DraIII	CACNNNGTG	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	2 cut(s)	508, 639
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	2 cut(s)	543, 576
Eco147I	AGGCCT	1 cut(s)	778
Eco47I	GGWCC	2 cut(s)	547, 932
Eco81I	CCTNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRII	CCWGG	2 cut(s)	217, 769
EcoT14I	CCWWGG	2 cut(s)	543, 576
ErhI	CCWWGG	2 cut(s)	543, 576
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	6 cut(s)	64, 192, 295, 455, 631, 705
FatI	CATG	6 cut(s)	60, 188, 291, 451, 627, 701
FauI	CCCGC	2 cut(s)	234, 836
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	8 cut(s)	145, 185, 308, 340, 365, 476, 575, 776
Fsp4HI	GCNGC	1 cut(s)	801
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	510, 641, 778
HapII	CCGG	2 cut(s)	375, 669
HgaI	GACGC	2 cut(s)	551, 718
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	6 cut(s)	64, 192, 295, 455, 631, 705
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	2 cut(s)	312, 502
HindII	GTYRAC	2 cut(s)	312, 502
HindIII	AAGCTT	3 cut(s)	234, 275, 953
HinfI	GANTC	4 cut(s)	222, 286, 301, 346
HpaII	CCGG	2 cut(s)	375, 669
Hpy166II	GTNNAC	4 cut(s)	38, 312, 478, 502
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	8 cut(s)	12, 336, 350, 479, 611, 717, 854, 867
Hpy8I	GTNNAC	4 cut(s)	38, 312, 478, 502
Hpy99I	CGWCG	1 cut(s)	712
HpyAV	CCTTC	4 cut(s)	86, 608, 768, 860
HpyCH4III	ACNGT	2 cut(s)	160, 598
HpyCH4V	TGCA	6 cut(s)	38, 77, 397, 686, 800, 903
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 961
HpyF3I	CTNAG	2 cut(s)	342, 780
Hsp92II	CATG	6 cut(s)	64, 192, 295, 455, 631, 705
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	884
Kzo9I	GATC	3 cut(s)	149, 481, 766
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	1 cut(s)	812
LweI	GCATC	2 cut(s)	343, 695
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	436, 598
MalI	GATC	3 cut(s)	151, 483, 768
MboI	GATC	3 cut(s)	149, 481, 766
MboII	GAAGA	1 cut(s)	634
MhlI	GDGCHC	3 cut(s)	40, 165, 795
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	4 cut(s)	114, 201, 413, 658
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	40, 163, 464, 612, 789, 817
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	2 cut(s)	375, 669
MspR9I	CCNGG	2 cut(s)	219, 771
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	219, 771
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	83, 961
NdeII	GATC	3 cut(s)	149, 481, 766
NlaIII	CATG	6 cut(s)	64, 192, 295, 455, 631, 705
NlaIV	GGNNCC	2 cut(s)	391, 882
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	3 cut(s)	192, 455, 631
NspV	TTCGAA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	778
PciI	ACATGT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	617
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	222, 286, 301
PflFI	GACNNNGTC	1 cut(s)	712
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	1 cut(s)	802
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	932
PscI	ACATGT	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	2 cut(s)	217, 769
PspGI	CCWGG	2 cut(s)	217, 769
PspN4I	GGNNCC	2 cut(s)	391, 882
PspPI	GGNCC	2 cut(s)	547, 932
PspPPI	RGGWCCY	1 cut(s)	932
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	728
PsyI	GACNNNGTC	1 cut(s)	712
RsaI	GTAC	4 cut(s)	179, 423, 488, 882
RsaNI	GTAC	4 cut(s)	178, 422, 487, 881
RseI	CAYNNNNRTG	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	617
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	3 cut(s)	149, 481, 766
Sau96I	GGNCC	2 cut(s)	547, 932
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	219, 771
SduI	GDGCHC	3 cut(s)	40, 165, 795
SfaNI	GCATC	2 cut(s)	343, 695
SfcI	CTRYAG	2 cut(s)	798, 927
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	2 cut(s)	547, 932
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	114, 201, 413, 658
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	4 cut(s)	241, 268, 550, 829
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	217, 769
StyI	CCWWGG	2 cut(s)	543, 576
TaaI	ACNGT	2 cut(s)	160, 598
TaqI	TCGA	4 cut(s)	184, 304, 718, 868
TasI	AATT	4 cut(s)	114, 201, 413, 658
TatI	WGTACW	2 cut(s)	177, 486
TfiI	GAWTC	3 cut(s)	222, 286, 301
TscAI	CASTG	5 cut(s)	40, 163, 370, 438, 802
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	17, 149, 278, 480
TspRI	CASTG	5 cut(s)	40, 163, 370, 438, 802
Tth111I	GACNNNGTC	1 cut(s)	712
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	547, 932
XapI	RAATTY	2 cut(s)	413, 658
XceI	RCATGY	3 cut(s)	192, 455, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.