Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Forward (+)

60954239 .. 60961462

Gene Structure 7224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0478300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGGTTACTCTCATTCCCGACAGTGTTAGGAATCTATGGGAAAGGTGGAATCTCCGGAGCTTTGTCCTCTTAAGCCTCTCATTGCAGACCACTTTAATTCTTTTTGCACCATTCAGAAAGAGGACACCCAACACATGGCTAACCTTGGTCATCTGGTCAGCGTACTTACTTGCTGATTGGGCTGCTAACTTTGCAGTTGGATTAATCTCAAACAGCCAAGGTGACAATTCAGTTTCCGATGAGGCCAGTGATCTTTTGGTATTTTGGACTCCCTTTCTTTTGTTACACCTTGGTGGTCCAGACACCATCACTGCTTTTGCTTTGGAAGATAATACCCTGTGGCTAAGGCACTTGCTTGGCCTCGTATTCCAGGTTATAGCTTCTGTTTATCTCTTCCTTCAGTCACTACCGAATAAGCTGTGGCTACCAACAGGGCTTCTCTTTGTTGCTGGAATCATTAAGTATGCAGAGAGAACACGTGCTTTGTATCTTGCAAGCTTGGATAACTTCAAGGAATCCATGCTTAAGAAGCCTGATGCTGGACCTAATTATGCGAAGCTCATGGAAGAATACTCCTCAAAGCTAGATGCTCAACTTCCAACTCATATTGAACTCACAGCAGAGCGCAGCAAAGAATCCAGGACAATAACTTATGTGATTGAAAAAGGCGATATGGAGAATGACATTGCAGTGGTACGACATGCTCATCACTTCTTCCAAATCTTCAAGGGTCTTATTGTAGATCTCATTTTTAGCTTTCATGAACGCTACGAGAGCCGTGTGATTTTCCATGAGCGAAACTCAGAAGAAGCTTTCAAATTAATCGCTGTCGAGCTCAACTTTATATATGAAGCTCTCTTCACCAAGGTGGTTGTAGTGCATTCTAAGCTAGGATACTTCTTCCGGGCTATATCCCTTGGTGCAGTTTCTGTAGCTCTTGTTTTCTTCTATAAATTAGAGAAAACTGATTTGCATAGGTATGAATATGATGTTAGAATTACCTATGTGTTACTTTATGGTGCCATTGGCCTGGATTTATTATCTGCTTTCATGGTTCTATTCTCTGATTGGACTGTAGCAGCTCTGAACAAGTATTGGCAAGACTCTTGCATAGCCACTGCTATTCTAGGAAAGTATCTCCATCTTAAGAGATCATGGTGGTCTACCAAAGCAAAAAATGGCAGTGATCAAACTCCAATTGCAAGATCAACAAACTGTTTGGAGTGGACTAGAGAAGTTCTGTTCCGGAGATGGTATGAATCTGTGTCTGCATTCAACTTGATACATTATTCCCTCAAGGAATGTCCAAAAATTTCCCCTACAATTTTGGACTACTTTGGCATCGTCTACATTAAAATCATTGACTTATTGGGTGTTAAGGATCTTCGAGATAGGATGAAATACCGGTCCAGCAAGCCACTAACTAAAGATTTATGGGATTTCATTTTCAAAGAAGTGAAAAGTAAATCTCTGCTGGCAGATGATCCTGAAACTGCGAAGAAGATATGTTCAGCCAGAGGTGATTGGGTTCTCCAGGATAGCGATTGGACTCTCCGAGATAGCTATTGGGATAGTACTGTGGACAAAAACATGGTGATCAGTAAGTTATTATCTTATGTTGTTGATGTTGATTATGACCAAAGCATTCTATTATGGCATATTGCTACTGAGTTTTGCTATAACATGGATGATTACGATGATGCAAGTGATGATAATGATAGTGGTATTGCTGGTGAGGCTATTGCTGATAGTGGCAGAATCAACAATTTCTTCGCAAAACTTTCAAGACCATTACATATAGGTCTAGATTTTATTAAGAAATTAAAAGGAGCGATATGGGGGCTTGGGGAGGCCATGGCCAATTTTTGCCAAAATCTAGTTTCGCATCAAATTGCTGGGGATCATCTACAACATGATGAATGTGCTGATGCTGCTGATGATGATAGTGATGATAGTGTCCATTATTTTAATAAGAGAAAAGAATACAGTAAGACACTGTCTGATTACATGTTATATCTCTTAGTTATGCAGCCTACTATGATGTCTTCTGTACCAGGAATTGGACAAATAAGATTCCGAGATACGTGTGAAGAAGCCAAAAAGTTCTTCAGCAGAAGGGAATTGAGATCTGGAATGGAAGAGGCTTGTAAAAGAATCCTTGATGTAAACACTGATGTCAAACCTGTTGATGTCAAAGGGGATAGAAGTAAATCTGTTTTGTTTGATGCATGCATTTTGGCCAAAGAGCTGCAGAAATTGAAGGAAAATAAATGGGATTTAATAAGTGAAGTGTGGGTGGAATTGTTGTCATTTGCTGCTGGGCATTGCAGAGCAAATGACCATGCTCAGTTGCTGTGTAAAGGTGGAGAGCTTGTCACTTTTGTTTGGTTATTGATGGCTCATTTTGGCATAGGGGAGCAGTTCCAAATAAATGAGGGCCATGCTAGAGCAAAACTTCTTGTGGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

823

Amino Acids

94.36

Weight (kDa)

6.03

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4220	PF13968	52 - 430	1e-100	Domain of unknown function (DUF4220)
DUF594	PF04578	754 - 804	2.9e-22	Protein of unknown function, DUF594

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1019
AccB7I	CCANNNNNTGG	2 cut(s)	135, 2060
AccI	GTMKAC	2 cut(s)	1163, 1347
AccIII	TCCGGA	2 cut(s)	54, 1245
AclWI	GGATC	3 cut(s)	1389, 1478, 1908
AcoI	YGGCCR	2 cut(s)	1857, 2238
AcsI	RAATTY	1 cut(s)	1311
AcuI	CTGAAG	2 cut(s)	383, 2092
AcvI	CACGTG	1 cut(s)	479
AfaI	GTAC	4 cut(s)	164, 696, 1576, 2052
AfiI	CCNNNNNNNGG	3 cut(s)	135, 539, 2060
AflII	CTTAAG	3 cut(s)	70, 524, 1145
AflIII	ACRYGT	3 cut(s)	476, 2007, 2084
AgeI	ACCGGT	1 cut(s)	1404
AgsI	TTSAA	9 cut(s)	511, 611, 662, 727, 817, 1276, 1450, 1785, 2260
AjnI	CCWGG	5 cut(s)	369, 638, 1029, 1533, 2053
AjuI	GAANNNNNNNTTGG	2 cut(s)	2090, 2122
AleI	CACNNNNGTG	2 cut(s)	291, 866
Alw21I	GWGCWC	1 cut(s)	837
AlwI	GGATC	3 cut(s)	1389, 1478, 1908
AlwNI	CAGNNNCTG	2 cut(s)	929, 2353
Aor13HI	TCCGGA	2 cut(s)	54, 1245
AoxI	GGCC	7 cut(s)	243, 358, 1027, 1851, 1857, 2238, 2437
ApeKI	GCWGC	7 cut(s)	182, 627, 1079, 1931, 2029, 2248, 2315
ApoI	RAATTY	1 cut(s)	1311
AseI	ATTAAT	2 cut(s)	203, 821
AsiGI	ACCGGT	1 cut(s)	1404
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	296, 542, 1407, 2437
AsuC2I	CCSGG	1 cut(s)	905
AsuHPI	GGTGA	5 cut(s)	233, 853, 1532, 1606, 1745
AvaII	GGWCC	3 cut(s)	296, 542, 1407
BalI	TGGCCA	2 cut(s)	1859, 2240
BanI	GGYRCC	1 cut(s)	1019
BanII	GRGCYC	1 cut(s)	837
BbrPI	CACGTG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	2037
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	7 cut(s)	169, 639, 1091, 1918, 2041, 2235, 2302
BccI	CCATC	4 cut(s)	314, 1149, 1245, 2389
BceAI	ACGGC	1 cut(s)	762
BciT130I	CCWGG	5 cut(s)	371, 640, 1031, 1535, 2055
BciVI	GTATCC	1 cut(s)	887
BclI	TGATCA	2 cut(s)	1186, 1596
BcnI	CCSGG	1 cut(s)	905
BfaI	CTAG	7 cut(s)	584, 890, 1127, 1230, 1805, 1877, 2445
BfmI	CTRYAG	3 cut(s)	930, 1074, 2249
BfrI	CTTAAG	3 cut(s)	70, 524, 1145
BfuI	GTATCC	1 cut(s)	887
BglII	AGATCT	2 cut(s)	742, 2126
BisI	GCNGC	7 cut(s)	183, 628, 1080, 1932, 2030, 2249, 2316
BlsI	GCNGC	7 cut(s)	184, 629, 1081, 1933, 2031, 2250, 2317
BmcAI	AGTACT	1 cut(s)	1576
Bme1390I	CCNGG	6 cut(s)	371, 640, 905, 1031, 1535, 2055
Bme18I	GGWCC	3 cut(s)	296, 542, 1407
BmgT120I	GGNCC	4 cut(s)	296, 542, 1407, 2437
BmiI	GGNNCC	1 cut(s)	1021
BmrFI	CCNGG	6 cut(s)	371, 640, 905, 1031, 1535, 2055
BmsI	GCATC	7 cut(s)	526, 577, 1350, 1690, 1894, 1918, 2215
BpiI	GAAGAC	1 cut(s)	2037
BplI	GAGNNNNNCTC	2 cut(s)	785, 817
BpmI	CTGGAG	1 cut(s)	1517
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	1280
BpuMI	CCSGG	1 cut(s)	905
BsaAI	YACGTR	2 cut(s)	479, 2085
BsaJI	CCNNGG	6 cut(s)	144, 217, 289, 864, 916, 1854
BsaWI	WCCGGW	3 cut(s)	54, 1245, 1404
BsaXI	ACNNNNNCTCC	2 cut(s)	2358, 2388
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 539, 2060
Bse118I	RCCGGY	1 cut(s)	1404
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	3 cut(s)	80, 684, 2323
BseAI	TCCGGA	2 cut(s)	54, 1245
BseBI	CCWGG	5 cut(s)	371, 640, 1031, 1535, 2055
BseDI	CCNNGG	6 cut(s)	144, 217, 289, 864, 916, 1854
BseGI	GGATG	2 cut(s)	1401, 1693
BseLI	CCNNNNNNNGG	3 cut(s)	135, 539, 2060
BseMI	GCAATG	3 cut(s)	80, 684, 2323
BseMII	CTCAG	3 cut(s)	816, 1659, 2360
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	7 cut(s)	169, 639, 1091, 1918, 2041, 2235, 2302
BseYI	CCCAGC	2 cut(s)	1895, 2318
BsgI	GTGCAG	1 cut(s)	942
BshFI	GGCC	7 cut(s)	245, 360, 1029, 1853, 1859, 2240, 2439
BshNI	GGYRCC	1 cut(s)	1019
BshTI	ACCGGT	1 cut(s)	1404
BsiHKAI	GWGCWC	1 cut(s)	837
BsiSI	CCGG	4 cut(s)	55, 904, 1246, 1405
BslI	CCNNNNNNNGG	3 cut(s)	135, 539, 2060
BsmI	GAATGC	3 cut(s)	880, 1271, 1644
BsnI	GGCC	7 cut(s)	245, 360, 1029, 1853, 1859, 2240, 2439
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp13I	TCCGGA	2 cut(s)	54, 1245
Bsp19I	CCATGG	1 cut(s)	1854
BspANI	GGCC	7 cut(s)	245, 360, 1029, 1853, 1859, 2240, 2439
BspCNI	CTCAG	3 cut(s)	815, 1660, 2359
BspEI	TCCGGA	2 cut(s)	54, 1245
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	1021
BspMAI	CTGCAG	1 cut(s)	2253
BspPI	GGATC	3 cut(s)	1389, 1478, 1908
BspT107I	GGYRCC	1 cut(s)	1019
BspTI	CTTAAG	3 cut(s)	70, 524, 1145
BsrDI	GCAATG	3 cut(s)	80, 684, 2323
BsrFI	RCCGGY	1 cut(s)	1404
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	1404
BssECI	CCNNGG	6 cut(s)	144, 217, 289, 864, 916, 1854
BssT1I	CCWWGG	6 cut(s)	144, 217, 289, 864, 916, 1854
Bst2UI	CCWGG	5 cut(s)	371, 640, 1031, 1535, 2055
Bst4CI	ACNGT	6 cut(s)	23, 1075, 1217, 1579, 1988, 1998
Bst6I	CTCTTC	3 cut(s)	398, 863, 2133
BstAFI	CTTAAG	3 cut(s)	70, 524, 1145
BstBAI	YACGTR	2 cut(s)	479, 2085
BstC8I	GCNNGC	4 cut(s)	496, 1415, 1476, 2230
BstDEI	CTNAG	6 cut(s)	344, 802, 885, 1668, 2020, 2346
BstDSI	CCRYGG	1 cut(s)	1854
BstF5I	GGATG	2 cut(s)	1401, 1693
BstHHI	GCGC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 191, 529, 774, 886, 1736, 1931
BstNI	CCWGG	5 cut(s)	371, 640, 1031, 1535, 2055
BstNSI	RCATGY	3 cut(s)	704, 2011, 2232
BstSCI	CCNGG	6 cut(s)	369, 638, 903, 1029, 1533, 2053
BstSFI	CTRYAG	3 cut(s)	930, 1074, 2249
BstV1I	GCAGC	7 cut(s)	169, 639, 1091, 1918, 2041, 2235, 2302
BstV2I	GAAGAC	1 cut(s)	2037
BstX2I	RGATCY	3 cut(s)	742, 1381, 2126
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	3 cut(s)	742, 1381, 2126
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	7 cut(s)	245, 360, 1029, 1853, 1859, 2240, 2439
BtgI	CCRYGG	1 cut(s)	1854
BtsCI	GGATG	2 cut(s)	1401, 1693
BtsI	GCAGTG	4 cut(s)	309, 696, 1116, 1189
BtsIMutI	CAGTG	8 cut(s)	28, 253, 309, 696, 1116, 1189, 1994, 2169
Cac8I	GCNNGC	4 cut(s)	496, 1415, 1476, 2230
CaiI	CAGNNNCTG	2 cut(s)	929, 2353
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	1404
Cfr13I	GGNCC	4 cut(s)	296, 542, 1407, 2437
Csp6I	GTAC	4 cut(s)	163, 695, 1575, 2051
CspAI	ACCGGT	1 cut(s)	1404
CviQI	GTAC	4 cut(s)	163, 695, 1575, 2051
DdeI	CTNAG	6 cut(s)	344, 802, 885, 1668, 2020, 2346
EaeI	YGGCCR	2 cut(s)	1857, 2238
Eam1104I	CTCTTC	3 cut(s)	398, 863, 2133
EarI	CTCTTC	3 cut(s)	398, 863, 2133
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	6 cut(s)	144, 217, 289, 864, 916, 1854
Eco24I	GRGCYC	1 cut(s)	837
Eco47I	GGWCC	3 cut(s)	296, 542, 1407
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	2 cut(s)	383, 2092
Eco72I	CACGTG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	835
EcoRII	CCWGG	5 cut(s)	369, 638, 1029, 1533, 2053
EcoT14I	CCWWGG	6 cut(s)	144, 217, 289, 864, 916, 1854
EcoT22I	ATGCAT	2 cut(s)	2230, 2234
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	6 cut(s)	144, 217, 289, 864, 916, 1854
FbaI	TGATCA	2 cut(s)	1186, 1596
FblI	GTMKAC	2 cut(s)	1163, 1347
Fnu4HI	GCNGC	7 cut(s)	183, 628, 1080, 1932, 2030, 2249, 2316
FokI	GGATG	2 cut(s)	1408, 1700
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	7 cut(s)	183, 628, 1080, 1932, 2030, 2249, 2316
FspBI	CTAG	7 cut(s)	584, 890, 1127, 1230, 1805, 1877, 2445
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	7 cut(s)	183, 628, 1080, 1932, 2030, 2249, 2316
GsaI	CCCAGC	2 cut(s)	1899, 2322
GsuI	CTGGAG	1 cut(s)	1517
HaeIII	GGCC	7 cut(s)	245, 360, 1029, 1853, 1859, 2240, 2439
HapII	CCGG	4 cut(s)	55, 904, 1246, 1405
HhaI	GCGC	1 cut(s)	627
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	496, 810
HpaII	CCGG	4 cut(s)	55, 904, 1246, 1405
HphI	GGTGA	5 cut(s)	233, 853, 1532, 1606, 1745
Hpy166II	GTNNAC	5 cut(s)	1164, 1227, 1348, 1582, 2167
Hpy188I	TCNGA	8 cut(s)	116, 238, 805, 1066, 1086, 1556, 2002, 2078
Hpy8I	GTNNAC	5 cut(s)	1164, 1227, 1348, 1582, 2167
HpyAV	CCTTC	3 cut(s)	407, 2109, 2254
HpyCH4III	ACNGT	6 cut(s)	23, 1075, 1217, 1579, 1988, 1998
HpyCH4IV	ACGT	2 cut(s)	478, 2084
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 191, 529, 774, 886, 1736, 1931
HpyF3I	CTNAG	6 cut(s)	344, 802, 885, 1668, 2020, 2346
HpySE526I	ACGT	2 cut(s)	478, 2084
HspAI	GCGC	1 cut(s)	625
Kpn2I	TCCGGA	2 cut(s)	54, 1245
Ksp22I	TGATCA	2 cut(s)	1186, 1596
LmnI	GCTCC	3 cut(s)	57, 1829, 2416
Lsp1109I	GCAGC	7 cut(s)	169, 639, 1091, 1918, 2041, 2235, 2302
LweI	GCATC	7 cut(s)	526, 577, 1350, 1690, 1894, 1918, 2215
MaeI	CTAG	7 cut(s)	584, 890, 1127, 1230, 1805, 1877, 2445
MaeII	ACGT	2 cut(s)	478, 2084
MaeIII	GTNAC	6 cut(s)	4, 221, 282, 402, 1008, 2374
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	3 cut(s)	742, 1381, 2126
MhlI	GDGCHC	1 cut(s)	837
MlsI	TGGCCA	2 cut(s)	1859, 2240
MluNI	TGGCCA	2 cut(s)	1859, 2240
MlyI	GAGTC	3 cut(s)	262, 1097, 1543
MmeI	TCCRAC	2 cut(s)	178, 623
Mox20I	TGGCCA	2 cut(s)	1859, 2240
Mph1103I	ATGCAT	2 cut(s)	2230, 2234
MroI	TCCGGA	2 cut(s)	54, 1245
MscI	TGGCCA	2 cut(s)	1859, 2240
MslI	CAYNNNNRTG	4 cut(s)	291, 689, 866, 978
Msp20I	TGGCCA	2 cut(s)	1859, 2240
MspCI	CTTAAG	3 cut(s)	70, 524, 1145
MspI	CCGG	4 cut(s)	55, 904, 1246, 1405
MspR9I	CCNGG	6 cut(s)	371, 640, 905, 1031, 1535, 2055
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	3 cut(s)	880, 1271, 1644
MvaI	CCWGG	5 cut(s)	371, 640, 1031, 1535, 2055
MwoI	GCNNNNNNNGC	7 cut(s)	179, 191, 529, 774, 886, 1736, 1931
NciI	CCSGG	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	1854
NlaIV	GGNNCC	1 cut(s)	1021
NmuCI	GTSAC	3 cut(s)	221, 402, 2374
NsiI	ATGCAT	2 cut(s)	2230, 2234
NspI	RCATGY	3 cut(s)	704, 2011, 2232
OliI	CACNNNNGTG	2 cut(s)	291, 866
PaeI	GCATGC	1 cut(s)	2232
PagI	TCATGA	1 cut(s)	760
PciI	ACATGT	1 cut(s)	2007
PctI	GAATGC	3 cut(s)	880, 1271, 1644
PfeI	GAWTC	9 cut(s)	31, 49, 453, 515, 635, 1259, 1758, 2073, 2154
PflFI	GACNNNGTC	1 cut(s)	1996
PflMI	CCANNNNNTGG	2 cut(s)	135, 2060
PfoI	TCCNGGA	2 cut(s)	638, 1533
PinAI	ACCGGT	1 cut(s)	1404
PkrI	GCNGC	7 cut(s)	184, 629, 1081, 1933, 2031, 2250, 2317
PleI	GAGTC	3 cut(s)	262, 1097, 1543
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	3 cut(s)	262, 1097, 1543
Ppu21I	YACGTR	2 cut(s)	479, 2085
PscI	ACATGT	1 cut(s)	2007
PshBI	ATTAAT	2 cut(s)	203, 821
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	5 cut(s)	369, 638, 1029, 1533, 2053
PspCI	CACGTG	1 cut(s)	479
PspFI	CCCAGC	2 cut(s)	1895, 2318
PspGI	CCWGG	5 cut(s)	369, 638, 1029, 1533, 2053
PspN4I	GGNNCC	1 cut(s)	1021
PspPI	GGNCC	4 cut(s)	296, 542, 1407, 2437
PstI	CTGCAG	1 cut(s)	2253
PstNI	CAGNNNCTG	2 cut(s)	929, 2353
PsuI	RGATCY	3 cut(s)	742, 1381, 2126
PsyI	GACNNNGTC	1 cut(s)	1996
RsaI	GTAC	4 cut(s)	164, 696, 1576, 2052
RsaNI	GTAC	4 cut(s)	163, 695, 1575, 2051
RseI	CAYNNNNRTG	4 cut(s)	291, 689, 866, 978
SacI	GAGCTC	1 cut(s)	837
SatI	GCNGC	7 cut(s)	183, 628, 1080, 1932, 2030, 2249, 2316
Sau96I	GGNCC	4 cut(s)	296, 542, 1407, 2437
ScaI	AGTACT	1 cut(s)	1576
SchI	GAGTC	3 cut(s)	262, 1097, 1543
ScrFI	CCNGG	6 cut(s)	371, 640, 905, 1031, 1535, 2055
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	7 cut(s)	526, 577, 1350, 1690, 1894, 1918, 2215
SfcI	CTRYAG	3 cut(s)	930, 1074, 2249
SinI	GGWCC	3 cut(s)	296, 542, 1407
SmiMI	CAYNNNNRTG	4 cut(s)	291, 689, 866, 978
SmlI	CTYRAG	4 cut(s)	70, 524, 1145, 1295
SmoI	CTYRAG	4 cut(s)	70, 524, 1145, 1295
SphI	GCATGC	1 cut(s)	2232
SspMI	CTAG	7 cut(s)	584, 890, 1127, 1230, 1805, 1877, 2445
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	6 cut(s)	369, 638, 903, 1029, 1533, 2053
StyI	CCWWGG	6 cut(s)	144, 217, 289, 864, 916, 1854
TaaI	ACNGT	6 cut(s)	23, 1075, 1217, 1579, 1988, 1998
TaiI	ACGT	2 cut(s)	481, 2087
TaqI	TCGA	2 cut(s)	831, 1387
TatI	WGTACW	1 cut(s)	1574
TfiI	GAWTC	9 cut(s)	31, 49, 453, 515, 635, 1259, 1758, 2073, 2154
TscAI	CASTG	8 cut(s)	28, 253, 316, 696, 1123, 1189, 2001, 2176
TseFI	GTSAC	3 cut(s)	221, 402, 2374
TseI	GCWGC	7 cut(s)	182, 627, 1079, 1931, 2029, 2248, 2315
Tsp45I	GTSAC	3 cut(s)	221, 402, 2374
TspDTI	ATGAA	9 cut(s)	749, 777, 864, 996, 1039, 1272, 1412, 1432, 1932
TspRI	CASTG	8 cut(s)	28, 253, 316, 696, 1123, 1189, 2001, 2176
Tth111I	GACNNNGTC	1 cut(s)	1996
Van91I	CCANNNNNTGG	2 cut(s)	135, 2060
Vha464I	CTTAAG	3 cut(s)	70, 524, 1145
VpaK11BI	GGWCC	3 cut(s)	296, 542, 1407
VspI	ATTAAT	2 cut(s)	203, 821
XapI	RAATTY	1 cut(s)	1311
XbaI	TCTAGA	1 cut(s)	1804
XceI	RCATGY	3 cut(s)	704, 2011, 2232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	2 cut(s)	1163, 1347
XspI	CTAG	7 cut(s)	584, 890, 1127, 1230, 1805, 1877, 2445
ZrmI	AGTACT	1 cut(s)	1576
Zsp2I	ATGCAT	2 cut(s)	2230, 2234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.