Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Forward (+)

8045867 .. 8051741

Gene Structure 5875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1095000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGCAAGCCGGGCTTATTATTCCGGCGAGAAACATGCCTTCCATGATGGGAGGCAATGGGAACATTACTGGGTTTGCGTCAACTTCAGGACTCACACTTGGTCAGCCAAATATGATGGACGCCAGTAATCTGCACCCGCTAGACATGGCTCCAAACACCTCTGAAAGCGACATTCCTCGGTTCCGAGATGATGACTTCGACAGTGCTAACAAATCCGGCAGCGACAACCCTGAAGGCGGTTCGGGTGATGACCAAGAAAACCCTCGACCCAAAAAGAAGCGTTATCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCGTTTTTCAAGGAATGTCCCCACCCAGATGACAAGCAGAGGAAGGAACTGAGCCGGGAATTAGGTTTGGAACCATTACAAGTCAAATTTTGGTTTCAAAACAAGCGCACCCAAATGAAGACTCAGCATGAGCGGCATGAGAACACACAACTTCGGAACGAAAACGAAAAGCTCCGTACTGATAACATGAGGTACAGAGAAGCGCTAGGTAATGCCTCATGCCCCAATTGTGGCGGCCCAACAGTTCTAGGGGAGATGTCTTTCGACGAACACCATCTGAGACTCGAAAATGCTCGATTACGAGAAGAGATTGATAGTATATCAGCGATAGCTGCGAAGTATGTTGGCAAACCATTAGGAACCTACCCTCTCATGTCTTCTCCAGTTCCTTCCCGTGGTCAACTTGATCTTGGGGTTGGGAACTTTGGTGGTCAGCCAGGCATGGGCGGTGAGATGTATGGTGCTGGAGACCTTCTCAGGTCAATCAGTGCACCAAGTGAGGTAGACAAGCCAATGATAATTGAGCTTGCTCTTGCAGCTATGGAGGAACTCTTCAAAATGGCCCAAATGGGTGAACCTTTGTGGATGACAAGCTTTGATGGCACCACAACCATACTCAATGAAGATGAGTACATCAGGACATTCCCTCGTGGAATCGGGCCAAAACAAAACGGCTTCAAAACTGAAGCTTCGCGTGAGAGTGCAGTTGTTATCATGAACCACATTAACCTTGTTGAGATTCTTATGGATGTGAATCAATGGTCGACTGTGTTTTCTGGGATTGTGTCAAGAGCTCTGACCCTTGAAGTCCTATCATCTGGCGTGCCTGGAAATTACAATGGAGCCTTGCAAGTGATGACGGCAGAATTCCAAGTTCCTTCACCACTTGTTCCAACTCGTGAGAGTTATTATGTAAGGTACTGCAAACAGCATGCCGATGGCACCTGGGCTGTGGTTGATGTTTCATTGGACGACTTGCGCCCCAATCCTGAGCCTAGATCTTGTCAAAGAAGGCCCTCGGGATGCCTAATTCAAGAATTGCCAAATGGATATTCAAAGGTTACATGGGTTGAGCATGCTGAAGTGGATGAAAGAGGTGTTCACAACCTCTACAAGCAGCTGGTTAGCTCCGGCCATGCATTTGGCGCGAAACGATGGGTTGCCACCTTGGACCGGCAATGCGAACGTCTAGCTAGTGCAATGGCATCAAACATCCCTACTGGTGATGTTGGAGTGATTACAAATCAAGAAGGGAGAAAAAGCATGCTAAAATTGGCTGAAAGAATGGTGATTAGCTTCTGTTCTGGAGTGAGTGCATCAACCACTCACACATGGACCACACTGTCTGGAACCGGTGCTGATGATGTCCGGGTGATGACCCGAAAAAGTGTGGATGATCCCGGAAGGCCTCCAGGTATTGTGCTCAGTGCCGCCACATCTTTTTGGCTTCCAGTTCCTCCCAAAAGAGTCTTTGAGTTTCTCCGCGATGAGAACTCCCGCAGCGAGTGGGATATTCTTTCCAATGGGGGAATTGTTCAAGAGATGGCACACATTGCGAATGGTCATGACACTGGGAATTGCGTGTCTCTACTACGAAGTGCCAATTCAAGCCAGAGCAACATGCTGATACTGCAAGAGAGCTGCACTGACCCAACAGCTTCCTTTGTGATTTATGCACCAGTTGACATTGTTGCCATGAATGTGGTGCTGAATGGGAGTGACCCTGATTATGTTGCCCTTCTTCCTTCTGGGTTTGCTATACTCCCGGATGGAGCCGACATTGGAGACTCTGGCTCTGGTGGTGGTTCCCTTCTCACTGTTGCTTTTCAGATCTTGGTTGATTCAATCCCAACTGCTAAGCTGTCTCTCGGGTCGGTTGCAACAGTTAACAATCTTATTGCTTGCACTGTTGAGAGGATCAAAGCTGCATTGTCATGCGACAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

757

Amino Acids

82.59

Weight (kDa)

5.32

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 147	1.1e-18	Homeodomain
START	PF01852	282 - 503	4e-55	START domain
PDF2_C	PF25797	523 - 753	1.1e-101	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1663
AccB1I	GGYRCC	2 cut(s)	923, 1262
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	454
AccI	GTMKAC	2 cut(s)	825, 1085
AccII	CGCG	3 cut(s)	1015, 1469, 1806
AciI	CCGC	9 cut(s)	137, 237, 289, 454, 555, 768, 1752, 1804, 1819
AclWI	GGATC	3 cut(s)	301, 1712, 2246
AcoI	YGGCCR	1 cut(s)	1453
AcsI	RAATTY	2 cut(s)	407, 1187
AcuI	CTGAAG	4 cut(s)	69, 252, 1026, 1422
AcyI	GRCGYC	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	4 cut(s)	499, 515, 953, 1241
AfeI	AGCGCT	1 cut(s)	525
AfiI	CCNNNNNNNGG	6 cut(s)	236, 316, 551, 716, 764, 1494
AgeI	ACCGGT	1 cut(s)	1673
AjnI	CCWGG	4 cut(s)	757, 1147, 1265, 1732
AjuI	GAANNNNNNNTTGG	2 cut(s)	1357, 1389
Alw21I	GWGCWC	3 cut(s)	814, 1117, 1746
Alw26I	GTCTC	5 cut(s)	595, 783, 1911, 2100, 2190
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	301, 1712, 2246
Ama87I	CYCGRG	2 cut(s)	1339, 2189
Aor51HI	AGCGCT	1 cut(s)	525
AoxI	GGCC	6 cut(s)	556, 882, 980, 1334, 1453, 1727
ApaLI	GTGCAC	1 cut(s)	810
ApeKI	GCWGC	7 cut(s)	219, 653, 857, 1438, 1821, 1962, 2246
ApoI	RAATTY	2 cut(s)	407, 1187
AsiGI	ACCGGT	1 cut(s)	1673
AspLEI	GCGC	4 cut(s)	429, 526, 1302, 1469
AspS9I	GGNCC	6 cut(s)	557, 883, 980, 1335, 1492, 1656
AsuC2I	CCSGG	5 cut(s)	10, 377, 1691, 1722, 2087
AsuHPI	GGTGA	8 cut(s)	257, 278, 782, 905, 1194, 1556, 1621, 1705
AvaI	CYCGRG	2 cut(s)	1339, 2189
AvaII	GGWCC	2 cut(s)	1492, 1656
BaeGI	GKGCMC	1 cut(s)	814
BanI	GGYRCC	2 cut(s)	923, 1262
BanII	GRGCYC	1 cut(s)	1117
BauI	CACGAG	2 cut(s)	969, 1218
BbsI	GAAGAC	2 cut(s)	446, 690
Bbv12I	GWGCWC	3 cut(s)	814, 1117, 1746
BbvI	GCAGC	7 cut(s)	231, 640, 869, 1450, 1833, 1949, 2233
BccI	CCATC	8 cut(s)	40, 109, 603, 914, 1253, 1470, 1858, 2084
BceAI	ACGGC	2 cut(s)	1009, 1197
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	4 cut(s)	759, 1149, 1267, 1734
BcnI	CCSGG	5 cut(s)	10, 377, 1691, 1722, 2087
BcoDI	GTCTC	5 cut(s)	595, 783, 1911, 2100, 2190
BfaI	CTAG	6 cut(s)	140, 527, 569, 1317, 1511, 1515
BfoI	RGCGCY	1 cut(s)	527
BglII	AGATCT	2 cut(s)	1319, 2151
BlpI	GCTNAGC	1 cut(s)	2178
Bme1390I	CCNGG	9 cut(s)	10, 377, 759, 1149, 1267, 1691, 1722, 1734, 2087
Bme18I	GGWCC	2 cut(s)	1492, 1656
BmeT110I	CYCGRG	2 cut(s)	1339, 2189
BmgT120I	GGNCC	6 cut(s)	557, 883, 980, 1335, 1492, 1656
BmrFI	CCNGG	9 cut(s)	10, 377, 759, 1149, 1267, 1691, 1722, 1734, 2087
BmrI	ACTGGG	2 cut(s)	78, 1902
BmsI	GCATC	4 cut(s)	310, 1334, 1535, 1646
BmuI	ACTGGG	2 cut(s)	78, 1902
BpiI	GAAGAC	2 cut(s)	446, 690
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
BpmI	CTGGAG	4 cut(s)	687, 807, 1647, 1716
Bpu10I	CCTNAGC	1 cut(s)	1311
Bpu1102I	GCTNAGC	1 cut(s)	2178
BpuMI	CCSGG	5 cut(s)	10, 377, 1691, 1722, 2087
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	5 cut(s)	176, 715, 1266, 1338, 1488
BsaWI	WCCGGW	1 cut(s)	1673
Bsc4I	CCNNNNNNNGG	6 cut(s)	236, 316, 551, 716, 764, 1494
Bse118I	RCCGGY	2 cut(s)	1494, 1673
Bse1I	ACTGG	7 cut(s)	73, 123, 704, 1546, 1772, 1897, 2000
Bse3DI	GCAATG	4 cut(s)	61, 1505, 1527, 1872
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	4 cut(s)	759, 1149, 1267, 1734
BseDI	CCNNGG	5 cut(s)	176, 715, 1266, 1338, 1488
BseGI	GGATG	7 cut(s)	912, 1075, 1349, 1414, 1533, 1720, 2095
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	6 cut(s)	236, 316, 551, 716, 764, 1494
BseMI	GCAATG	4 cut(s)	61, 1505, 1527, 1872
BseMII	CTCAG	7 cut(s)	311, 362, 458, 590, 811, 1302, 1759
BseNI	ACTGG	7 cut(s)	73, 123, 704, 1546, 1772, 1897, 2000
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	7 cut(s)	231, 640, 869, 1450, 1833, 1949, 2233
BsgI	GTGCAG	3 cut(s)	116, 1044, 1948
Bsh1236I	CGCG	3 cut(s)	1015, 1469, 1806
BshFI	GGCC	6 cut(s)	558, 884, 982, 1336, 1455, 1729
BshNI	GGYRCC	2 cut(s)	923, 1262
BshTI	ACCGGT	1 cut(s)	1673
BsiHKAI	GWGCWC	3 cut(s)	814, 1117, 1746
BsiHKCI	CYCGRG	2 cut(s)	1339, 2189
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	6 cut(s)	236, 316, 551, 716, 764, 1494
BsmAI	GTCTC	5 cut(s)	595, 783, 1911, 2100, 2190
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	6 cut(s)	558, 884, 982, 1336, 1455, 1729
Bso31I	GGTCTC	1 cut(s)	783
BsoBI	CYCGRG	2 cut(s)	1339, 2189
Bsp1286I	GDGCHC	3 cut(s)	814, 1117, 1746
Bsp143I	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
Bsp1720I	GCTNAGC	1 cut(s)	2178
BspACI	CCGC	9 cut(s)	137, 237, 289, 454, 555, 768, 1752, 1804, 1819
BspANI	GGCC	6 cut(s)	558, 884, 982, 1336, 1455, 1729
BspCNI	CTCAG	7 cut(s)	310, 363, 457, 591, 810, 1303, 1758
BspFNI	CGCG	3 cut(s)	1015, 1469, 1806
BspHI	TCATGA	2 cut(s)	1035, 1885
BspPI	GGATC	3 cut(s)	301, 1712, 2246
BspT107I	GGYRCC	2 cut(s)	923, 1262
BspTNI	GGTCTC	1 cut(s)	783
BsrBI	CCGCTC	1 cut(s)	454
BsrDI	GCAATG	4 cut(s)	61, 1505, 1527, 1872
BsrFI	RCCGGY	2 cut(s)	1494, 1673
BsrI	ACTGG	7 cut(s)	73, 123, 704, 1546, 1772, 1897, 2000
BssAI	RCCGGY	2 cut(s)	1494, 1673
BssECI	CCNNGG	5 cut(s)	176, 715, 1266, 1338, 1488
BssMI	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	2 cut(s)	969, 1218
BssT1I	CCWWGG	1 cut(s)	1488
Bst2BI	CACGAG	2 cut(s)	969, 1218
Bst2UI	CCWGG	4 cut(s)	759, 1149, 1267, 1734
Bst4CI	ACNGT	7 cut(s)	203, 565, 1090, 1665, 2140, 2206, 2230
Bst6I	CTCTTC	2 cut(s)	621, 878
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	1874
BstC8I	GCNNGC	7 cut(s)	6, 849, 1145, 1254, 1398, 1586, 2224
BstDEI	CTNAG	8 cut(s)	297, 371, 444, 599, 797, 1311, 1745, 2178
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	7 cut(s)	912, 1075, 1349, 1414, 1533, 1720, 2095
BstFNI	CGCG	3 cut(s)	1015, 1469, 1806
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	4 cut(s)	429, 526, 1302, 1469
BstKTI	GATC	6 cut(s)	309, 730, 1322, 1720, 2154, 2241
BstMAI	GTCTC	5 cut(s)	595, 783, 1911, 2100, 2190
BstMBI	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 454, 653, 857, 921, 1466, 1874, 1951
BstNI	CCWGG	4 cut(s)	759, 1149, 1267, 1734
BstNSI	RCATGY	5 cut(s)	37, 1256, 1400, 1588, 1945
BstSCI	CCNGG	9 cut(s)	8, 375, 757, 1147, 1265, 1689, 1720, 1732, 2085
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	3 cut(s)	1015, 1469, 1806
BstV1I	GCAGC	7 cut(s)	231, 640, 869, 1450, 1833, 1949, 2233
BstV2I	GAAGAC	2 cut(s)	446, 690
BstX2I	RGATCY	3 cut(s)	306, 1319, 2151
BstXI	CCANNNNNNTGG	2 cut(s)	1463, 2023
BstYI	RGATCY	3 cut(s)	306, 1319, 2151
BsuRI	GGCC	6 cut(s)	558, 884, 982, 1336, 1455, 1729
BtgI	CCRYGG	1 cut(s)	715
BtgZI	GCGATG	1 cut(s)	1821
BtsCI	GGATG	7 cut(s)	912, 1075, 1349, 1414, 1533, 1720, 2095
BtsIMutI	CAGTG	8 cut(s)	208, 814, 1661, 1753, 1890, 1965, 2136, 2226
Cac8I	GCNNGC	7 cut(s)	6, 849, 1145, 1254, 1398, 1586, 2224
CciI	TCATGA	2 cut(s)	1035, 1885
CfoI	GCGC	4 cut(s)	429, 526, 1302, 1469
Cfr10I	RCCGGY	2 cut(s)	1494, 1673
Cfr13I	GGNCC	6 cut(s)	557, 883, 980, 1335, 1492, 1656
CseI	GACGC	2 cut(s)	66, 128
Csp6I	GTAC	4 cut(s)	498, 514, 952, 1240
CspAI	ACCGGT	1 cut(s)	1673
CviQI	GTAC	4 cut(s)	498, 514, 952, 1240
DdeI	CTNAG	8 cut(s)	297, 371, 444, 599, 797, 1311, 1745, 2178
DpnI	GATC	6 cut(s)	308, 729, 1321, 1719, 2153, 2240
DpnII	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
DraIII	CACNNNGTG	1 cut(s)	818
DrdI	GACNNNNNNGTC	1 cut(s)	1663
DseDI	GACNNNNNNGTC	1 cut(s)	1663
EaeI	YGGCCR	1 cut(s)	1453
Eam1104I	CTCTTC	2 cut(s)	621, 878
EarI	CTCTTC	2 cut(s)	621, 878
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	1 cut(s)	1488
Eco147I	AGGCCT	1 cut(s)	1729
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	783
Eco47I	GGWCC	2 cut(s)	1492, 1656
Eco47III	AGCGCT	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	4 cut(s)	69, 252, 1026, 1422
Eco88I	CYCGRG	2 cut(s)	1339, 2189
EcoICRI	GAGCTC	1 cut(s)	1115
EcoO109I	RGGNCCY	1 cut(s)	1335
EcoRI	GAATTC	1 cut(s)	1187
EcoRII	CCWGG	4 cut(s)	757, 1147, 1265, 1732
EcoT14I	CCWWGG	1 cut(s)	1488
EcoT22I	ATGCAT	1 cut(s)	1462
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	1 cut(s)	1488
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	324
FauI	CCCGC	2 cut(s)	144, 1826
FblI	GTMKAC	2 cut(s)	825, 1085
FokI	GGATG	7 cut(s)	919, 1082, 1356, 1421, 1520, 1727, 2102
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	6 cut(s)	140, 527, 569, 1317, 1511, 1515
GlaI	GCGC	4 cut(s)	428, 525, 1301, 1468
GsuI	CTGGAG	4 cut(s)	687, 807, 1647, 1716
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	6 cut(s)	558, 884, 982, 1336, 1455, 1729
HgaI	GACGC	2 cut(s)	66, 128
HhaI	GCGC	4 cut(s)	429, 526, 1302, 1469
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	4 cut(s)	427, 524, 1300, 1467
HinP1I	GCGC	4 cut(s)	427, 524, 1300, 1467
HincII	GTYRAC	5 cut(s)	81, 722, 1086, 2005, 2209
HindII	GTYRAC	5 cut(s)	81, 722, 1086, 2005, 2209
HindIII	AAGCTT	2 cut(s)	913, 1008
HinfI	GANTC	9 cut(s)	90, 442, 603, 975, 1060, 1075, 1788, 2108, 2162
HpaI	GTTAAC	1 cut(s)	2209
HphI	GGTGA	8 cut(s)	257, 278, 782, 905, 1194, 1556, 1621, 1705
Hpy166II	GTNNAC	9 cut(s)	81, 722, 812, 826, 896, 1086, 1423, 2005, 2209
Hpy188I	TCNGA	7 cut(s)	163, 185, 306, 477, 600, 1119, 2151
Hpy8I	GTNNAC	9 cut(s)	81, 722, 812, 826, 896, 1086, 1423, 2005, 2209
Hpy99I	CGWCG	1 cut(s)	590
HpyCH4III	ACNGT	7 cut(s)	203, 565, 1090, 1665, 2140, 2206, 2230
HpyCH4IV	ACGT	1 cut(s)	1507
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 454, 653, 857, 921, 1466, 1874, 1951
HpyF3I	CTNAG	8 cut(s)	297, 371, 444, 599, 797, 1311, 1745, 2178
HpySE526I	ACGT	1 cut(s)	1507
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	4 cut(s)	427, 524, 1300, 1467
KspAI	GTTAAC	1 cut(s)	2209
Kzo9I	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
LmnI	GCTCC	5 cut(s)	154, 498, 1163, 1454, 2093
Lsp1109I	GCAGC	7 cut(s)	231, 640, 869, 1450, 1833, 1949, 2233
LweI	GCATC	4 cut(s)	310, 1334, 1535, 1646
MaeI	CTAG	6 cut(s)	140, 527, 569, 1317, 1511, 1515
MaeII	ACGT	1 cut(s)	1507
MaeIII	GTNAC	2 cut(s)	1381, 2039
MalI	GATC	6 cut(s)	308, 729, 1321, 1719, 2153, 2240
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
MboII	GAAGA	6 cut(s)	451, 638, 690, 865, 956, 2054
MfeI	CAATTG	1 cut(s)	547
MflI	RGATCY	3 cut(s)	306, 1319, 2151
MhlI	GDGCHC	3 cut(s)	814, 1117, 1746
MlyI	GAGTC	5 cut(s)	84, 436, 597, 1797, 2102
MmeI	TCCRAC	2 cut(s)	1238, 1531
Mph1103I	ATGCAT	1 cut(s)	1462
MseI	TTAA	2 cut(s)	1047, 2208
MslI	CAYNNNNRTG	5 cut(s)	348, 434, 1257, 2021, 2254
MspA1I	CMGCKG	1 cut(s)	1441
MspR9I	CCNGG	9 cut(s)	10, 377, 759, 1149, 1267, 1691, 1722, 1734, 2087
MunI	CAATTG	1 cut(s)	547
MvaI	CCWGG	4 cut(s)	759, 1149, 1267, 1734
MvnI	CGCG	3 cut(s)	1015, 1469, 1806
MwoI	GCNNNNNNNGC	8 cut(s)	10, 454, 653, 857, 921, 1466, 1874, 1951
NciI	CCSGG	5 cut(s)	10, 377, 1691, 1722, 2087
NdeII	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
NmuCI	GTSAC	1 cut(s)	2039
NsiI	ATGCAT	1 cut(s)	1462
NspI	RCATGY	5 cut(s)	37, 1256, 1400, 1588, 1945
PaeI	GCATGC	3 cut(s)	1256, 1400, 1588
PagI	TCATGA	2 cut(s)	1035, 1885
PceI	AGGCCT	1 cut(s)	1729
PfeI	GAWTC	4 cut(s)	975, 1060, 1075, 2162
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	2 cut(s)	1720, 2085
PinAI	ACCGGT	1 cut(s)	1673
PleI	GAGTC	5 cut(s)	84, 436, 597, 1796, 2102
PpsI	GAGTC	5 cut(s)	84, 436, 597, 1796, 2102
Psp124BI	GAGCTC	1 cut(s)	1117
Psp6I	CCWGG	4 cut(s)	757, 1147, 1265, 1732
PspGI	CCWGG	4 cut(s)	757, 1147, 1265, 1732
PspPI	GGNCC	6 cut(s)	557, 883, 980, 1335, 1492, 1656
PsuI	RGATCY	3 cut(s)	306, 1319, 2151
PvuII	CAGCTG	1 cut(s)	1441
RsaI	GTAC	4 cut(s)	499, 515, 953, 1241
RsaNI	GTAC	4 cut(s)	498, 514, 952, 1240
RseI	CAYNNNNRTG	5 cut(s)	348, 434, 1257, 2021, 2254
SacI	GAGCTC	1 cut(s)	1117
SalI	GTCGAC	1 cut(s)	1084
SaqAI	TTAA	2 cut(s)	1047, 2208
Sau3AI	GATC	6 cut(s)	306, 727, 1319, 1717, 2151, 2238
Sau96I	GGNCC	6 cut(s)	557, 883, 980, 1335, 1492, 1656
SchI	GAGTC	5 cut(s)	84, 436, 597, 1797, 2102
ScrFI	CCNGG	9 cut(s)	10, 377, 759, 1149, 1267, 1691, 1722, 1734, 2087
SduI	GDGCHC	3 cut(s)	814, 1117, 1746
SfaNI	GCATC	4 cut(s)	310, 1334, 1535, 1646
SinI	GGWCC	2 cut(s)	1492, 1656
SmiMI	CAYNNNNRTG	5 cut(s)	348, 434, 1257, 2021, 2254
SphI	GCATGC	3 cut(s)	1256, 1400, 1588
SseBI	AGGCCT	1 cut(s)	1729
SsiI	CCGC	9 cut(s)	137, 237, 289, 454, 555, 768, 1752, 1804, 1819
SspMI	CTAG	6 cut(s)	140, 527, 569, 1317, 1511, 1515
SstI	GAGCTC	1 cut(s)	1117
StuI	AGGCCT	1 cut(s)	1729
StyD4I	CCNGG	9 cut(s)	8, 375, 757, 1147, 1265, 1689, 1720, 1732, 2085
StyI	CCWWGG	1 cut(s)	1488
TaaI	ACNGT	7 cut(s)	203, 565, 1090, 1665, 2140, 2206, 2230
TaiI	ACGT	1 cut(s)	1510
TaqI	TCGA	6 cut(s)	198, 265, 585, 606, 616, 1085
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	3 cut(s)	457, 558, 1754
TfiI	GAWTC	4 cut(s)	975, 1060, 1075, 2162
Tru1I	TTAA	2 cut(s)	1047, 2208
Tru9I	TTAA	2 cut(s)	1047, 2208
TscAI	CASTG	8 cut(s)	208, 814, 1668, 1753, 1897, 1972, 2143, 2233
TseFI	GTSAC	1 cut(s)	2039
TseI	GCWGC	7 cut(s)	219, 653, 857, 1438, 1821, 1962, 2246
Tsp45I	GTSAC	1 cut(s)	2039
TspDTI	ATGAA	6 cut(s)	452, 957, 1052, 1275, 1425, 2033
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	8 cut(s)	208, 814, 1668, 1753, 1897, 1972, 2143, 2233
Van91I	CCANNNNNTGG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	810
VpaK11BI	GGWCC	2 cut(s)	1492, 1656
XapI	RAATTY	2 cut(s)	407, 1187
XceI	RCATGY	5 cut(s)	37, 1256, 1400, 1588, 1945
XmiI	GTMKAC	2 cut(s)	825, 1085
XspI	CTAG	6 cut(s)	140, 527, 569, 1317, 1511, 1515
Zsp2I	ATGCAT	1 cut(s)	1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.