Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Forward (+)

60949126 .. 60949686

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0478200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAAGAAAGTGAGCCAGACATCAGTGAAAATATCTAAGAAGGAGAAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACACTAGTGCAAGACCTCACCGGCAATGGAAGCTCAAATATCTCAATTACTACTTCCTCATCACACCCTCAGCAACAGCACAGAGTACCAGTTGTAGATGTTGAGGAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTGGATGTCTCAACTAATGCATCATTTGATTCTTCTGAGCTGTGGAACCAAGAAATGTTTATACATGACCAAGAATTAAACCAACTGTGTTATCAGATGTATTCAGATGATACTACAACAACAAATATTTTAGAAGGTTCATCACCTTCAACAGCAGACCAAATGGTGGATATGTTGCCATTTCAAGATCTTGAGTCATGGCTTTCGGGGACTGAGCCTTTTGATCCTTTCAACATTAATGGTTATGGTCAGATTGATCAAGAGGTCAGCATATTTGACTATGAGCTGTCAGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

186

Amino Acids

21.01

Weight (kDa)

4.39

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	207, 253
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	4 cut(s)	118, 408, 443, 490
AhlI	ACTAGT	2 cut(s)	124, 254
AluBI	AGCT	4 cut(s)	114, 153, 298, 544
AluI	AGCT	4 cut(s)	114, 153, 298, 544
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	130, 393
BbvCI	CCTCAGC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	2 cut(s)	124, 254
BfaI	CTAG	2 cut(s)	125, 255
BglII	AGATCT	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	305
BmsI	GCATC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	94, 100, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	3 cut(s)	203, 285, 462
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	445, 481, 514
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	202, 286, 463
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	445, 481, 514
Bst4CI	ACNGT	2 cut(s)	65, 345
BstDEI	CTNAG	4 cut(s)	39, 189, 294, 471
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	448, 484, 517
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	445, 481, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 550
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	33, 99
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	206, 252
CviAII	CATG	2 cut(s)	323, 456
CviQI	GTAC	2 cut(s)	206, 252
DdeI	CTNAG	4 cut(s)	39, 189, 294, 471
DpnI	GATC	3 cut(s)	447, 483, 516
DpnII	GATC	3 cut(s)	445, 481, 514
Eco147I	AGGCCT	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	2 cut(s)	326, 459
FaiI	YATR	8 cut(s)	320, 324, 431, 457, 504, 530, 540, 559
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	2 cut(s)	322, 455
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	2 cut(s)	125, 255
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	2 cut(s)	326, 459
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	75, 287, 452
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	130, 393
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	295, 354, 364, 510
Hpy188III	TCNNGA	5 cut(s)	79, 118, 443, 449, 518
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	37, 46, 386, 414
HpyCH4III	ACNGT	2 cut(s)	65, 345
HpyCH4V	TGCA	2 cut(s)	130, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 550
HpyF3I	CTNAG	4 cut(s)	39, 189, 294, 471
Hsp92II	CATG	2 cut(s)	326, 459
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	445, 481, 514
LpnPI	CCDG	5 cut(s)	32, 154, 222, 255, 534
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	125, 255
MalI	GATC	3 cut(s)	447, 483, 516
MboI	GATC	3 cut(s)	445, 481, 514
MboII	GAAGA	3 cut(s)	19, 61, 282
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	2 cut(s)	165, 332
MlyI	GAGTC	2 cut(s)	69, 461
MnlI	CCTC	6 cut(s)	75, 146, 187, 198, 217, 514
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	3 cut(s)	60, 335, 495
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	150, 550
NdeII	GATC	3 cut(s)	445, 481, 514
NlaIII	CATG	2 cut(s)	326, 459
NlaIV	GGNNCC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	424
PleI	GAGTC	2 cut(s)	69, 460
PpsI	GAGTC	2 cut(s)	69, 460
PshBI	ATTAAT	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	207, 253
RsaNI	GTAC	2 cut(s)	206, 252
SaqAI	TTAA	3 cut(s)	60, 335, 495
Sau3AI	GATC	3 cut(s)	445, 481, 514
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	69, 461
SetI	ASST	8 cut(s)	116, 138, 155, 300, 397, 406, 525, 546
SfaNI	GCATC	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	79, 109, 449
SmoI	CTYRAG	3 cut(s)	79, 109, 449
SpeI	ACTAGT	2 cut(s)	124, 254
Sse9I	AATT	2 cut(s)	165, 332
SseBI	AGGCCT	1 cut(s)	85
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	2 cut(s)	125, 255
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	65, 345
TasI	AATT	2 cut(s)	165, 332
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	60, 335, 495
Tru9I	TTAA	3 cut(s)	60, 335, 495
TscAI	CASTG	2 cut(s)	33, 106
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	33, 106
Van91I	CCANNNNNTGG	1 cut(s)	424
VspI	ATTAAT	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	125, 255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.