Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Reverse (-)

76798939 .. 76806326

Gene Structure 7388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG557700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGATTTGTTCCAGCCAAACATGATGGAAGGTGGAGGTCATTTCGGAAACCCACTGGACATGATGGCCACTCAGAACACATCAGAAAGCGAGCTGAATGCACGTCTCGGTGATGATTTCGACAGTGCTACAAAATCTGGCAGCGAGAACCTGGAAGGAGGTGGCTCCGGCGACGATGGACAAGACCCTCGCCCCAACAAGAAGAAGAGATATCACCGCCACACCCAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAATTGAGTCGAGAGTTAGGTTTGGAACCATTACAAGTTAAATTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACGCAGCATGAGAGGCATGAGAACACGAGCCTTCGTAATGATAATGAAAAGCTTCGAGCTGATAACATGAGATATCGAGAGGCACTGAGCAATGCATCATGTCCTAATTGCGGAGGCCCAACGGCTATTGGAGAGATGTCCTTCGATGAGCATCATTTGAGACTTGAAAATGCTCGATTAAGAGAAGAGATTGATAGAATATCAGCAATTGCTGCTAAATATGTCGGCAAGCCAGTGGGGAACTACCCTCTTATATCTTCACCAGTTCCTCCTAACCGCAGTCCACTTGATCTTGGAGTGGGAAACATGGGGACCAGTCCTCACCACAGCTTCTTATTAAACTCAGACATGTATGCTCCAGGAGACATTATGCGGTCAATCGGTGCACCTAGTGAGGCAGATAAGCCCATGATTATTGAGCTTGCAGTTGCAGCTATGGAGGAGCTAATCCGAATGGCTCAAATTGGTGAACCTTTGTGGTTGAATAGCATTGATGGATCAACTACTGTGCTAAATGAGGATGAGTACATTCGAACATTTCCTCGTGGAATTGTGCCAAAACAATCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCACAATAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAACTGTATTTTCGGGGATTGTATCAAGAGCTATGACTCTGGATGTGCTATCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGACAGCCGAATTTCAAGTACCATCTCCATTGGTTCCAACTCGTGAGAGTTATTTTGTGAGGTACTGTAAGCAGCATGTCGATGGCACTTGGGCAGTGGTTGATGTCTCCTTGGACAATCAACGTGGCTATACTTCTGCTCTGAAATCATGCCAAAGAAGACCTTCTGGTTGTCTCATCCAAGAAATGCCAAATGGATACTCAAAGGTTACATGGATTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACAATCTGTACAAGCAGCTGGTCAACTCTGGCAATGCATTCGGGGCAAAAAGATGGGTTGCGACCTTGGACCGCCAATGTGAGCGTCTCGCCAGTGCCTTGGCGACAAACATCCCTACCGGTGATGTTGGTGTGATAACAACTCAAGAAGGGAGGAAGAGCATGTTGAAGCTGGCCGAGAGAATGGTTATAAGTTTCTGTGCTGGAGTGAGTGCATCTACCACTCATACATGGACGACGCTCTCTGGAACAGGGGCTGATGATGTTCGTGTGATGACCCGAAAGAGTGTGGATGATCCAGGAAGGCCTCCGGGCATTGTGCTCAGCGCTGCAACCTCATTCTGGCTTCCTGTTCCCCCCAAAAGGGTCTTTGAGTTCCTTCGTGATGAGAACTCACGAAATGAGTGGGATATCCTCTCCAATGGTGGCGTCGTGCAAGAAATGGCGCACATAGCCAACGGACGTGACACTGGGAACTGCGTGTCACTACTTCGAGTAAATAGTGCCAATTCTAGTCAGAGCAACATGCTCATACTGCAGGAGAGCTGCACTGACTCAACGGCATCGTATGTAATCTATGCCCCGGTGGACATAGTTGCTATGAATGTCGTTCTGAATGGCAGTGACCCTGACTATGTTGCCCTGCTGCCATCTGGGTTTGCTATACTCCCAGATGGAACTAGCGGGAGCAACAACGGGGAAGGTGAATCTGGAGGGTCCTTGTTGACTGTTGCCTTCCAGATCCTGGTGGATTCAGTTCCCACCGCAAAGCTGTCCCTGGGGTCTGTTGCAACAGTCAACAACCTCATAGCTTGCACAGTCGAGCGGATCAAGGCCTCATTGTCCTTGGACAATGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

743

Amino Acids

81.39

Weight (kDa)

5.4

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	68 - 123	1e-18	Homeodomain
START	PF01852	264 - 485	8e-53	START domain
PDF2_C	PF25797	504 - 738	6.8e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1559
AccB7I	CCANNNNNTGG	2 cut(s)	244, 2113
AccBSI	CCGCTC	1 cut(s)	2194
AccII	CGCG	1 cut(s)	958
AciI	CCGC	9 cut(s)	217, 480, 646, 742, 958, 1441, 2052, 2133, 2194
AclWI	GGATC	5 cut(s)	229, 874, 1658, 2104, 2204
AcoI	YGGCCR	2 cut(s)	66, 1542
AcsI	RAATTY	2 cut(s)	335, 1130
AcyI	GRCGYC	1 cut(s)	1797
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	4 cut(s)	896, 1140, 1184, 1379
AfeI	AGCGCT	1 cut(s)	1696
AfiI	CCNNNNNNNGG	6 cut(s)	244, 479, 1710, 1731, 1732, 2113
AflIII	ACRYGT	1 cut(s)	717
AgeI	ACCGGT	1 cut(s)	1487
AgsI	TTSAA	6 cut(s)	259, 536, 853, 943, 1136, 1537
AjiI	CACGTC	2 cut(s)	104, 1832
AjnI	CCWGG	5 cut(s)	150, 727, 1666, 2112, 2145
Alw21I	GWGCWC	2 cut(s)	757, 1692
Alw26I	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	5 cut(s)	229, 874, 1658, 2104, 2204
AlwNI	CAGNNNCTG	2 cut(s)	1625, 2113
Aor51HI	AGCGCT	1 cut(s)	1696
AoxI	GGCC	5 cut(s)	66, 484, 1542, 1673, 2202
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	9 cut(s)	141, 373, 581, 800, 1192, 1384, 1697, 1914, 2014
ApoI	RAATTY	2 cut(s)	335, 1130
AsiGI	ACCGGT	1 cut(s)	1487
Asp700I	GAANNNNTTC	2 cut(s)	420, 1282
AspLEI	GCGC	3 cut(s)	357, 1697, 1816
AspS9I	GGNCC	4 cut(s)	485, 681, 1438, 2085
AsuC2I	CCSGG	2 cut(s)	1680, 1952
AsuHPI	GGTGA	7 cut(s)	122, 206, 621, 683, 848, 1502, 2084
AsuII	TTCGAA	1 cut(s)	901
AvaII	GGWCC	3 cut(s)	681, 1438, 2085
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	68
BauI	CACGAG	3 cut(s)	394, 912, 1161
BbsI	GAAGAC	2 cut(s)	374, 1285
Bbv12I	GWGCWC	2 cut(s)	757, 1692
BbvI	GCAGC	9 cut(s)	153, 385, 568, 812, 1204, 1396, 1684, 1901, 2001
BccI	CCATC	9 cut(s)	19, 58, 170, 857, 1150, 1196, 1416, 2026, 2036
BceAI	ACGGC	2 cut(s)	507, 1944
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 1390, 1424
BciT130I	CCWGG	5 cut(s)	152, 729, 1668, 2114, 2147
BciVI	GTATCC	1 cut(s)	1310
BcnI	CCSGG	2 cut(s)	1680, 1952
BcoDI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BfaI	CTAG	3 cut(s)	759, 1881, 2049
BfmI	CTRYAG	1 cut(s)	1904
BfoI	RGCGCY	1 cut(s)	1698
BfuI	GTATCC	1 cut(s)	1310
BisI	GCNGC	9 cut(s)	142, 374, 582, 801, 1193, 1385, 1698, 1915, 2015
BlpI	GCTNAGC	1 cut(s)	1691
BlsI	GCNGC	9 cut(s)	143, 375, 583, 802, 1194, 1386, 1699, 1916, 2016
Bme1390I	CCNGG	7 cut(s)	152, 729, 1668, 1680, 1952, 2114, 2147
Bme18I	GGWCC	3 cut(s)	681, 1438, 2085
BmgBI	CACGTC	2 cut(s)	104, 1832
BmgT120I	GGNCC	4 cut(s)	485, 681, 1438, 2085
BmiI	GGNNCC	7 cut(s)	166, 321, 344, 682, 1108, 1155, 2086
BmrFI	CCNGG	7 cut(s)	152, 729, 1668, 1680, 1952, 2114, 2147
BmrI	ACTGGG	1 cut(s)	1848
BmsI	GCATC	4 cut(s)	473, 529, 1592, 1940
BmuI	ACTGGG	1 cut(s)	1848
BpiI	GAAGAC	2 cut(s)	374, 1285
BpmI	CTGGAG	4 cut(s)	711, 1104, 1593, 2100
Bpu1102I	GCTNAGC	1 cut(s)	1691
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	1497
BpuMI	CCSGG	2 cut(s)	1680, 1952
BsaBI	GATNNNNATC	2 cut(s)	519, 1017
BsaHI	GRCGYC	1 cut(s)	1797
BsaJI	CCNNGG	7 cut(s)	1230, 1434, 1467, 1950, 2145, 2146, 2214
BsaWI	WCCGGW	1 cut(s)	1487
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 479, 1710, 1731, 1732, 2113
Bse118I	RCCGGY	1 cut(s)	1487
Bse1I	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
Bse3DI	GCAATG	2 cut(s)	466, 1408
Bse8I	GATNNNNATC	2 cut(s)	519, 1017
BseBI	CCWGG	5 cut(s)	152, 729, 1668, 2114, 2147
BseDI	CCNNGG	7 cut(s)	1230, 1434, 1467, 1950, 2145, 2146, 2214
BseGI	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BseJI	GATNNNNATC	2 cut(s)	519, 1017
BseLI	CCNNNNNNNGG	6 cut(s)	244, 479, 1710, 1731, 1732, 2113
BseMI	GCAATG	2 cut(s)	466, 1408
BseMII	CTCAG	4 cut(s)	86, 446, 726, 1705
BseNI	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	9 cut(s)	153, 385, 568, 812, 1204, 1396, 1684, 1901, 2001
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	1900
Bsh1236I	CGCG	1 cut(s)	958
BshFI	GGCC	5 cut(s)	68, 486, 1544, 1675, 2204
BshTI	ACCGGT	1 cut(s)	1487
BsiHKAI	GWGCWC	2 cut(s)	757, 1692
BsiSI	CCGG	4 cut(s)	168, 1488, 1679, 1952
BslFI	GGGAC	2 cut(s)	694, 2128
BslI	CCNNNNNNNGG	6 cut(s)	244, 479, 1710, 1731, 1732, 2113
BsmAI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BsmBI	CGTCTC	2 cut(s)	110, 1460
BsmFI	GGGAC	2 cut(s)	694, 2128
BsmI	GAATGC	2 cut(s)	103, 1406
BsnI	GGCC	5 cut(s)	68, 486, 1544, 1675, 2204
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	757, 1692
Bsp1407I	TGTACA	1 cut(s)	1377
Bsp143I	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
Bsp1720I	GCTNAGC	1 cut(s)	1691
BspACI	CCGC	9 cut(s)	217, 480, 646, 742, 958, 1441, 2052, 2133, 2194
BspANI	GGCC	5 cut(s)	68, 486, 1544, 1675, 2204
BspCNI	CTCAG	4 cut(s)	85, 447, 725, 1704
BspFNI	CGCG	1 cut(s)	958
BspLI	GGNNCC	7 cut(s)	166, 321, 344, 682, 1108, 1155, 2086
BspMAI	CTGCAG	1 cut(s)	1908
BspPI	GGATC	5 cut(s)	229, 874, 1658, 2104, 2204
BspQI	GCTCTTC	1 cut(s)	1520
BspT104I	TTCGAA	1 cut(s)	901
BsrBI	CCGCTC	1 cut(s)	2194
BsrDI	GCAATG	2 cut(s)	466, 1408
BsrFI	RCCGGY	1 cut(s)	1487
BsrGI	TGTACA	1 cut(s)	1377
BsrI	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
BssAI	RCCGGY	1 cut(s)	1487
BssECI	CCNNGG	7 cut(s)	1230, 1434, 1467, 1950, 2145, 2146, 2214
BssMI	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
BssNI	GRCGYC	1 cut(s)	1797
BssSI	CACGAG	3 cut(s)	394, 912, 1161
BssT1I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
Bst2BI	CACGAG	3 cut(s)	394, 912, 1161
Bst2UI	CCWGG	5 cut(s)	152, 729, 1668, 2114, 2147
Bst4CI	ACNGT	7 cut(s)	125, 877, 1033, 1187, 2098, 2164, 2188
Bst6I	CTCTTC	3 cut(s)	200, 549, 1520
BstACI	GRCGYC	1 cut(s)	1797
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	1377
BstBI	TTCGAA	1 cut(s)	901
BstC8I	GCNNGC	5 cut(s)	92, 599, 792, 1542, 2182
BstDEI	CTNAG	4 cut(s)	72, 455, 712, 1691
BstF5I	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BstFNI	CGCG	1 cut(s)	958
BstH2I	RGCGCY	1 cut(s)	1698
BstHHI	GCGC	3 cut(s)	357, 1697, 1816
BstKTI	GATC	6 cut(s)	237, 661, 869, 1666, 2112, 2199
BstMAI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BstMBI	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
BstMWI	GCNNNNNNNGC	6 cut(s)	382, 581, 800, 1412, 1820, 1903
BstNI	CCWGG	5 cut(s)	152, 729, 1668, 2114, 2147
BstNSI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
BstSCI	CCNGG	7 cut(s)	150, 727, 1666, 1678, 1950, 2112, 2145
BstSFI	CTRYAG	1 cut(s)	1904
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	1 cut(s)	958
BstV1I	GCAGC	9 cut(s)	153, 385, 568, 812, 1204, 1396, 1684, 1901, 2001
BstV2I	GAAGAC	2 cut(s)	374, 1285
BstX2I	RGATCY	2 cut(s)	234, 2109
BstXI	CCANNNNNNTGG	1 cut(s)	1468
BstYI	RGATCY	2 cut(s)	234, 2109
BsuI	GTATCC	1 cut(s)	1310
BsuRI	GGCC	5 cut(s)	68, 486, 1544, 1675, 2204
BtrI	CACGTC	2 cut(s)	104, 1832
BtsCI	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BtsI	GCAGTG	2 cut(s)	1221, 1996
BtsIMutI	CAGTG	9 cut(s)	53, 130, 452, 609, 1221, 1468, 1836, 1917, 1996
Cac8I	GCNNGC	5 cut(s)	92, 599, 792, 1542, 2182
CaiI	CAGNNNCTG	2 cut(s)	1625, 2113
CfoI	GCGC	3 cut(s)	357, 1697, 1816
Cfr10I	RCCGGY	1 cut(s)	1487
Cfr13I	GGNCC	4 cut(s)	485, 681, 1438, 2085
CseI	GACGC	4 cut(s)	379, 1442, 1615, 1786
Csp6I	GTAC	4 cut(s)	895, 1139, 1183, 1378
CspAI	ACCGGT	1 cut(s)	1487
CspCI	CAANNNNNGTGG	2 cut(s)	1225, 1260
CviQI	GTAC	4 cut(s)	895, 1139, 1183, 1378
DdeI	CTNAG	4 cut(s)	72, 455, 712, 1691
DpnI	GATC	6 cut(s)	236, 660, 868, 1665, 2111, 2198
DpnII	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
DraIII	CACNNNGTG	1 cut(s)	761
EaeI	YGGCCR	2 cut(s)	66, 1542
Eam1104I	CTCTTC	3 cut(s)	200, 549, 1520
EarI	CTCTTC	3 cut(s)	200, 549, 1520
Eco130I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
Eco147I	AGGCCT	2 cut(s)	1675, 2204
Eco32I	GATATC	3 cut(s)	212, 443, 1780
Eco47I	GGWCC	3 cut(s)	681, 1438, 2085
Eco47III	AGCGCT	1 cut(s)	1696
EcoO109I	RGGNCCY	1 cut(s)	2085
EcoRII	CCWGG	5 cut(s)	150, 727, 1666, 2112, 2145
EcoRV	GATATC	3 cut(s)	212, 443, 1780
EcoT14I	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
EcoT22I	ATGCAT	2 cut(s)	466, 1408
ErhI	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
Esp3I	CGTCTC	2 cut(s)	110, 1460
FalI	AAGNNNNNCTT	2 cut(s)	1267, 1299
FaqI	GGGAC	2 cut(s)	694, 2128
FauI	CCCGC	2 cut(s)	951, 2045
Fnu4HI	GCNGC	9 cut(s)	142, 374, 582, 801, 1193, 1385, 1698, 1915, 2015
FokI	GGATG	7 cut(s)	902, 1025, 1082, 1283, 1367, 1466, 1673
Fsp4HI	GCNGC	9 cut(s)	142, 374, 582, 801, 1193, 1385, 1698, 1915, 2015
FspBI	CTAG	3 cut(s)	759, 1881, 2049
GlaI	GCGC	3 cut(s)	356, 1696, 1815
GluI	GCNGC	9 cut(s)	142, 374, 582, 801, 1193, 1385, 1698, 1915, 2015
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	4 cut(s)	711, 1104, 1593, 2100
HaeII	RGCGCY	1 cut(s)	1698
HaeIII	GGCC	5 cut(s)	68, 486, 1544, 1675, 2204
HapII	CCGG	4 cut(s)	168, 1488, 1679, 1952
HgaI	GACGC	4 cut(s)	379, 1442, 1615, 1786
HhaI	GCGC	3 cut(s)	357, 1697, 1816
Hin1I	GRCGYC	1 cut(s)	1797
Hin6I	GCGC	3 cut(s)	355, 1695, 1814
HinP1I	GCGC	3 cut(s)	355, 1695, 1814
HincII	GTYRAC	4 cut(s)	1029, 1393, 2094, 2167
HindII	GTYRAC	4 cut(s)	1029, 1393, 2094, 2167
HindIII	AAGCTT	3 cut(s)	249, 419, 951
HinfI	GANTC	8 cut(s)	301, 939, 1003, 1018, 1063, 1922, 2075, 2120
HpaII	CCGG	4 cut(s)	168, 1488, 1679, 1952
HphI	GGTGA	7 cut(s)	122, 206, 621, 683, 848, 1502, 2084
Hpy188I	TCNGA	8 cut(s)	47, 75, 85, 715, 821, 1263, 1887, 1983
Hpy99I	CGWCG	3 cut(s)	176, 1609, 1802
HpyCH4III	ACNGT	7 cut(s)	125, 877, 1033, 1187, 2098, 2164, 2188
HpyCH4IV	ACGT	3 cut(s)	103, 1243, 1831
HpyF10VI	GCNNNNNNNGC	6 cut(s)	382, 581, 800, 1412, 1820, 1903
HpyF3I	CTNAG	4 cut(s)	72, 455, 712, 1691
HpySE526I	ACGT	3 cut(s)	103, 1243, 1831
Hsp92I	GRCGYC	1 cut(s)	1797
HspAI	GCGC	3 cut(s)	355, 1695, 1814
Kzo9I	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
LguI	GCTCTTC	1 cut(s)	1520
LmnI	GCTCC	5 cut(s)	170, 730, 811, 1106, 2055
Lsp1109I	GCAGC	9 cut(s)	153, 385, 568, 812, 1204, 1396, 1684, 1901, 2001
LweI	GCATC	4 cut(s)	473, 529, 1592, 1940
MaeI	CTAG	3 cut(s)	759, 1881, 2049
MaeII	ACGT	3 cut(s)	103, 1243, 1831
MaeIII	GTNAC	4 cut(s)	1327, 1832, 1851, 1991
MalI	GATC	6 cut(s)	236, 660, 868, 1665, 2111, 2198
MbiI	CCGCTC	1 cut(s)	2194
MboI	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
MboII	GAAGA	8 cut(s)	214, 217, 247, 379, 566, 618, 1290, 1537
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	234, 2109
MhlI	GDGCHC	2 cut(s)	757, 1692
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	8 cut(s)	296, 335, 475, 576, 831, 918, 1130, 1876
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	3 cut(s)	310, 1057, 1916
MmeI	TCCRAC	1 cut(s)	1181
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	2 cut(s)	466, 1408
MroXI	GAANNNNTTC	2 cut(s)	420, 1282
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	333, 548, 707
MslI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	1387
MspI	CCGG	4 cut(s)	168, 1488, 1679, 1952
MspR9I	CCNGG	7 cut(s)	152, 729, 1668, 1680, 1952, 2114, 2147
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	103, 1406
MvaI	CCWGG	5 cut(s)	152, 729, 1668, 2114, 2147
MvnI	CGCG	1 cut(s)	958
MwoI	GCNNNNNNNGC	6 cut(s)	382, 581, 800, 1412, 1820, 1903
NciI	CCSGG	2 cut(s)	1680, 1952
NdeII	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
NlaIV	GGNNCC	7 cut(s)	166, 321, 344, 682, 1108, 1155, 2086
NmeAIII	GCCGAG	1 cut(s)	1570
NmuCI	GTSAC	3 cut(s)	1832, 1851, 1991
NsiI	ATGCAT	2 cut(s)	466, 1408
NspI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
NspV	TTCGAA	1 cut(s)	901
PasI	CCCWGGG	1 cut(s)	2146
PceI	AGGCCT	2 cut(s)	1675, 2204
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	1520
PctI	GAATGC	2 cut(s)	103, 1406
PdmI	GAANNNNTTC	2 cut(s)	420, 1282
PfeI	GAWTC	5 cut(s)	939, 1003, 1018, 2075, 2120
PflMI	CCANNNNNTGG	2 cut(s)	244, 2113
PfoI	TCCNGGA	2 cut(s)	727, 1666
PinAI	ACCGGT	1 cut(s)	1487
PkrI	GCNGC	9 cut(s)	143, 375, 583, 802, 1194, 1386, 1699, 1916, 2016
PleI	GAGTC	3 cut(s)	309, 1057, 1916
PpsI	GAGTC	3 cut(s)	309, 1057, 1916
PpuMI	RGGWCCY	1 cut(s)	2085
PscI	ACATGT	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	1559
Psp5II	RGGWCCY	1 cut(s)	2085
Psp6I	CCWGG	5 cut(s)	150, 727, 1666, 2112, 2145
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	5 cut(s)	150, 727, 1666, 2112, 2145
PspN4I	GGNNCC	7 cut(s)	166, 321, 344, 682, 1108, 1155, 2086
PspPI	GGNCC	4 cut(s)	485, 681, 1438, 2085
PspPPI	RGGWCCY	1 cut(s)	2085
PstI	CTGCAG	1 cut(s)	1908
PstNI	CAGNNNCTG	2 cut(s)	1625, 2113
PsuI	RGATCY	2 cut(s)	234, 2109
PvuII	CAGCTG	1 cut(s)	1387
RsaI	GTAC	4 cut(s)	896, 1140, 1184, 1379
RsaNI	GTAC	4 cut(s)	895, 1139, 1183, 1378
RseI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
SapI	GCTCTTC	1 cut(s)	1520
SaqAI	TTAA	3 cut(s)	333, 548, 707
SatI	GCNGC	9 cut(s)	142, 374, 582, 801, 1193, 1385, 1698, 1915, 2015
Sau3AI	GATC	6 cut(s)	234, 658, 866, 1663, 2109, 2196
Sau96I	GGNCC	4 cut(s)	485, 681, 1438, 2085
SchI	GAGTC	3 cut(s)	310, 1057, 1916
ScrFI	CCNGG	7 cut(s)	152, 729, 1668, 1680, 1952, 2114, 2147
SduI	GDGCHC	2 cut(s)	757, 1692
SfaNI	GCATC	4 cut(s)	473, 529, 1592, 1940
SfcI	CTRYAG	1 cut(s)	1904
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	3 cut(s)	681, 1438, 2085
SmiMI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
SmlI	CTYRAG	1 cut(s)	1512
SmoI	CTYRAG	1 cut(s)	1512
Sse9I	AATT	8 cut(s)	296, 335, 475, 576, 831, 918, 1130, 1876
SseBI	AGGCCT	2 cut(s)	1675, 2204
SsiI	CCGC	9 cut(s)	217, 480, 646, 742, 958, 1441, 2052, 2133, 2194
SspMI	CTAG	3 cut(s)	759, 1881, 2049
StuI	AGGCCT	2 cut(s)	1675, 2204
StyD4I	CCNGG	7 cut(s)	150, 727, 1666, 1678, 1950, 2112, 2145
StyI	CCWWGG	4 cut(s)	1230, 1434, 1467, 2214
TaaI	ACNGT	7 cut(s)	125, 877, 1033, 1187, 2098, 2164, 2188
TaiI	ACGT	3 cut(s)	106, 1246, 1834
TasI	AATT	8 cut(s)	296, 335, 475, 576, 831, 918, 1130, 1876
TatI	WGTACW	2 cut(s)	894, 1377
TfiI	GAWTC	5 cut(s)	939, 1003, 1018, 2075, 2120
Tru1I	TTAA	3 cut(s)	333, 548, 707
Tru9I	TTAA	3 cut(s)	333, 548, 707
TscAI	CASTG	9 cut(s)	60, 130, 459, 609, 1221, 1468, 1843, 1924, 1996
TseFI	GTSAC	3 cut(s)	1832, 1851, 1991
TseI	GCWGC	9 cut(s)	141, 373, 581, 800, 1192, 1384, 1697, 1914, 2014
Tsp45I	GTSAC	3 cut(s)	1832, 1851, 1991
TspDTI	ATGAA	5 cut(s)	380, 429, 995, 1371, 1985
TspGWI	ACGGA	1 cut(s)	1842
TspRI	CASTG	9 cut(s)	60, 130, 459, 609, 1221, 1468, 1843, 1924, 1996
Van91I	CCANNNNNTGG	2 cut(s)	244, 2113
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	3 cut(s)	681, 1438, 2085
XapI	RAATTY	2 cut(s)	335, 1130
XceI	RCATGY	5 cut(s)	721, 1199, 1346, 1534, 1897
XmnI	GAANNNNTTC	2 cut(s)	420, 1282
XspI	CTAG	3 cut(s)	759, 1881, 2049
Zsp2I	ATGCAT	2 cut(s)	466, 1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.