Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001866

Physical Location & Seq

Genomic Coordinates Reverse (-)

70300023 .. 70307466

Gene Structure 7444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG528000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGATTTGTTCCAGCCAAACATGATGGAAGGTGGAGGTCATTTCGGAAACCCACTGGACATGATGGCCACTCAGAACACATCAGAAAGCGAGCTGAATGCACGTCTCGGTGATGATTTCGACAGTGCTACAAAATCTGGCAGCGAGAACCTGGAAGGAGGTGGCTCCGGCGACGATGGACAAGACCCTCGCCCCAACAAGAAGAAGAGATATCACCGCCACACCCAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAATTGAGTCGAGAGTTAGGTTTGGAACCATTACAAGTTAAATTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACGCAGCATGAGAGGCATGAGAACACGAGCCTTCGTAATGATAATGAAAAGCTTCGAGCTGATAACATGAGATATCGAGAGGCACTGAGCAATGCATCATGTCCTAATTGCGGAGGCCCAACGGCTATTGGAGAGATGTCCTTCGATGAGCATCATTTGAGACTTGAAAATGCTCGATTAAGAGAAGAGATTGATAGAATATCAGCAATTGCTGCTAAATATGTCGGCAAGCCAGTGGGGAACTACCCTCTTATATCTTCACCAGTTCCTCCTAACCGCAGTCCACTTGATCTTGGAGTGGGAAACATGGGGACCAGTCCTCACCACAGCTTCTTATTAAACTCAGACATGTATGCTCCAGGAGACATTATGCGGTCAATCGGTGCACCTAGTGAGGCAGATAAGCCCATGATTATTGAGCTTGCAGTTGCAGCTATGGAAGAGCTAATCCGAATGGCTCAAATTGGTGAACCTTTGTGGTTGAATAGCATTGATGGATCAACTACTGTGCTAAATGAGGATGAGTACATTAGAACATTTCCTCGTGGAATTGTGCCAAAACAATCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCACAATAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAACTGTATTTTCGGGGATTGTATCAAGAGCTATGACTCTGGATGTGCTATCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGACAGCCGAATTTCAAGTACCATCTCCATTGGTTCCAACTCGTGAGAGTTATTTTGTGAGGTACTGTAAGCAGCATGTCGATGGCACTTGGGCAGTGGTTGATGTCTCCTTGGACAATCAACGTGGCTATACTTCTGCTCTGAAATCATGCCAAAGAAGACCTTCTGGTTGTCTCATCCAAGAAATGCCAAATGGATACTCAAAGGTTACATGGATTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACAATCTGTACAAGCAGCTGGTCAACTCTGGCAATGCATTCGGGGCAAAAAGATGGGTTGCGACCTTGGACCGCCAATGTGAGCGTCTCGCCAGTGCCTTGGCGACAAACATCCCTACCGGTGATGTTGGTGTGATAACAACTCAAGAAGGGAGGAAGAGCATGTTGAAGCTGGCCGAGAGAATGGTTATAAGTTTCTGTGCTGGAGTGAGTGCATCTACCACTCATACATGGACGACGCTCTCTGGAACAGGGGCTGATGATGTTCGTGTGATGACCCGAAAGAGTGTGGATGATCCAGGAAGGCCTCCAGGCATTGTGCTCAGCGCTGCAACCTCATTCTGGCTTCCTGTCCCCCCCAAAAGGGTCTTTGAGTTCCTTCGTGATGAGAACTCACGAAATGAGTGGGATATCCTCTCCAATGGTGGCATCGTGCAAGAAATGGCGCACATAGCCAACGGACGTGACACTGGGAACTGCGTGTCACTACTTCGAGTAAATGTACCTTCATATCTTCCTTCTTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

632

Amino Acids

70.25

Weight (kDa)

5.91

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	68 - 123	8.4e-19	Homeodomain
START	PF01852	264 - 485	5.8e-53	START domain
PDF2_C	PF25797	504 - 625	3.7e-51	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230 AT1G05230
fragaria_vesca	FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390 FvH4_6g43390
malus_domestica	MD09G1107300.v1.1 MD17G1095000.v1.1
prunus_persica	Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1 Prupe.3G218500_v2.0.a1
pyrus_communis	pycom09g02950 pycom17g09140
rosa_chinensis	RchiOBHm_Chr2g0159731
rosa_laevigata	RLG00000021177
rosa_multiflora	Rmu_sc0004966.1_g000003
rosa_roxburghii	Rroxscaffold_2G00090270 Rroxscaffold_2G00090370
rosa_rugosa	Rorug02G0478100 Rorug02G0478200 Rorug02G0478300
rosa_samantha	Rh2AG544900 Rh2BG557700 Rh2CG528000 Rh2DG567200
rosa_wichuraiana	Rw2G045060 Rw3G015270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1559
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccII	CGCG	1 cut(s)	958
AciI	CCGC	6 cut(s)	217, 480, 646, 742, 958, 1441
AclWI	GGATC	3 cut(s)	229, 874, 1658
AcoI	YGGCCR	2 cut(s)	66, 1542
AcsI	RAATTY	2 cut(s)	335, 1130
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	5 cut(s)	896, 1140, 1184, 1379, 1872
AfeI	AGCGCT	1 cut(s)	1696
AfiI	CCNNNNNNNGG	5 cut(s)	244, 479, 1710, 1731, 1732
AflIII	ACRYGT	1 cut(s)	717
AgeI	ACCGGT	1 cut(s)	1487
AgsI	TTSAA	6 cut(s)	259, 536, 853, 943, 1136, 1537
AjiI	CACGTC	2 cut(s)	104, 1832
AjnI	CCWGG	4 cut(s)	150, 727, 1666, 1678
Alw21I	GWGCWC	2 cut(s)	757, 1692
Alw26I	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	3 cut(s)	229, 874, 1658
AlwNI	CAGNNNCTG	1 cut(s)	1625
Aor51HI	AGCGCT	1 cut(s)	1696
AoxI	GGCC	4 cut(s)	66, 484, 1542, 1673
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	7 cut(s)	141, 373, 581, 800, 1192, 1384, 1697
ApoI	RAATTY	2 cut(s)	335, 1130
AsiGI	ACCGGT	1 cut(s)	1487
Asp700I	GAANNNNTTC	2 cut(s)	420, 1282
AspLEI	GCGC	3 cut(s)	357, 1697, 1816
AspS9I	GGNCC	3 cut(s)	485, 681, 1438
AsuHPI	GGTGA	6 cut(s)	122, 206, 621, 683, 848, 1502
AvaII	GGWCC	2 cut(s)	681, 1438
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	68
BauI	CACGAG	3 cut(s)	394, 912, 1161
BbsI	GAAGAC	2 cut(s)	374, 1285
Bbv12I	GWGCWC	2 cut(s)	757, 1692
BbvI	GCAGC	7 cut(s)	153, 385, 568, 812, 1204, 1396, 1684
BccI	CCATC	7 cut(s)	19, 58, 170, 857, 1150, 1196, 1416
BceAI	ACGGC	1 cut(s)	507
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 1390, 1424
BciT130I	CCWGG	4 cut(s)	152, 729, 1668, 1680
BciVI	GTATCC	1 cut(s)	1310
BcoDI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BfaI	CTAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	1698
BfuI	GTATCC	1 cut(s)	1310
BisI	GCNGC	7 cut(s)	142, 374, 582, 801, 1193, 1385, 1698
BlpI	GCTNAGC	1 cut(s)	1691
BlsI	GCNGC	7 cut(s)	143, 375, 583, 802, 1194, 1386, 1699
Bme1390I	CCNGG	4 cut(s)	152, 729, 1668, 1680
Bme18I	GGWCC	2 cut(s)	681, 1438
BmgBI	CACGTC	2 cut(s)	104, 1832
BmgT120I	GGNCC	3 cut(s)	485, 681, 1438
BmiI	GGNNCC	6 cut(s)	166, 321, 344, 682, 1108, 1155
BmrFI	CCNGG	4 cut(s)	152, 729, 1668, 1680
BmrI	ACTGGG	1 cut(s)	1848
BmsI	GCATC	4 cut(s)	473, 529, 1592, 1806
BmuI	ACTGGG	1 cut(s)	1848
BpiI	GAAGAC	2 cut(s)	374, 1285
BpmI	CTGGAG	4 cut(s)	711, 1104, 1593, 1662
Bpu1102I	GCTNAGC	1 cut(s)	1691
BpuEI	CTTGAG	1 cut(s)	1497
BsaBI	GATNNNNATC	2 cut(s)	519, 1017
BsaJI	CCNNGG	3 cut(s)	1230, 1434, 1467
BsaWI	WCCGGW	1 cut(s)	1487
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 479, 1710, 1731, 1732
Bse118I	RCCGGY	1 cut(s)	1487
Bse1I	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
Bse3DI	GCAATG	2 cut(s)	466, 1408
Bse8I	GATNNNNATC	2 cut(s)	519, 1017
BseBI	CCWGG	4 cut(s)	152, 729, 1668, 1680
BseDI	CCNNGG	3 cut(s)	1230, 1434, 1467
BseGI	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BseJI	GATNNNNATC	2 cut(s)	519, 1017
BseLI	CCNNNNNNNGG	5 cut(s)	244, 479, 1710, 1731, 1732
BseMI	GCAATG	2 cut(s)	466, 1408
BseMII	CTCAG	4 cut(s)	86, 446, 726, 1705
BseNI	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	7 cut(s)	153, 385, 568, 812, 1204, 1396, 1684
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	958
BshFI	GGCC	4 cut(s)	68, 486, 1544, 1675
BshTI	ACCGGT	1 cut(s)	1487
BsiHKAI	GWGCWC	2 cut(s)	757, 1692
BsiSI	CCGG	2 cut(s)	168, 1488
BslFI	GGGAC	2 cut(s)	694, 1706
BslI	CCNNNNNNNGG	5 cut(s)	244, 479, 1710, 1731, 1732
BsmAI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BsmBI	CGTCTC	2 cut(s)	110, 1460
BsmFI	GGGAC	2 cut(s)	694, 1706
BsmI	GAATGC	2 cut(s)	103, 1406
BsnI	GGCC	4 cut(s)	68, 486, 1544, 1675
Bsp1286I	GDGCHC	2 cut(s)	757, 1692
Bsp1407I	TGTACA	1 cut(s)	1377
Bsp143I	GATC	4 cut(s)	234, 658, 866, 1663
Bsp1720I	GCTNAGC	1 cut(s)	1691
BspACI	CCGC	6 cut(s)	217, 480, 646, 742, 958, 1441
BspANI	GGCC	4 cut(s)	68, 486, 1544, 1675
BspCNI	CTCAG	4 cut(s)	85, 447, 725, 1704
BspFNI	CGCG	1 cut(s)	958
BspLI	GGNNCC	6 cut(s)	166, 321, 344, 682, 1108, 1155
BspPI	GGATC	3 cut(s)	229, 874, 1658
BspQI	GCTCTTC	2 cut(s)	804, 1520
BsrDI	GCAATG	2 cut(s)	466, 1408
BsrFI	RCCGGY	1 cut(s)	1487
BsrGI	TGTACA	1 cut(s)	1377
BsrI	ACTGG	7 cut(s)	60, 602, 632, 684, 1087, 1461, 1843
BssAI	RCCGGY	1 cut(s)	1487
BssECI	CCNNGG	3 cut(s)	1230, 1434, 1467
BssMI	GATC	4 cut(s)	234, 658, 866, 1663
BssSI	CACGAG	3 cut(s)	394, 912, 1161
BssT1I	CCWWGG	3 cut(s)	1230, 1434, 1467
Bst2BI	CACGAG	3 cut(s)	394, 912, 1161
Bst2UI	CCWGG	4 cut(s)	152, 729, 1668, 1680
Bst4CI	ACNGT	4 cut(s)	125, 877, 1033, 1187
Bst6I	CTCTTC	4 cut(s)	200, 549, 804, 1520
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	1377
BstC8I	GCNNGC	4 cut(s)	92, 599, 792, 1542
BstDEI	CTNAG	4 cut(s)	72, 455, 712, 1691
BstF5I	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BstFNI	CGCG	1 cut(s)	958
BstH2I	RGCGCY	1 cut(s)	1698
BstHHI	GCGC	3 cut(s)	357, 1697, 1816
BstKTI	GATC	4 cut(s)	237, 661, 869, 1666
BstMAI	GTCTC	6 cut(s)	110, 523, 726, 1231, 1298, 1460
BstMBI	GATC	4 cut(s)	234, 658, 866, 1663
BstMWI	GCNNNNNNNGC	5 cut(s)	382, 581, 800, 1412, 1820
BstNI	CCWGG	4 cut(s)	152, 729, 1668, 1680
BstNSI	RCATGY	4 cut(s)	721, 1199, 1346, 1534
BstSCI	CCNGG	4 cut(s)	150, 727, 1666, 1678
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	1 cut(s)	958
BstV1I	GCAGC	7 cut(s)	153, 385, 568, 812, 1204, 1396, 1684
BstV2I	GAAGAC	2 cut(s)	374, 1285
BstX2I	RGATCY	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	1468
BstYI	RGATCY	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	1310
BsuRI	GGCC	4 cut(s)	68, 486, 1544, 1675
BtrI	CACGTC	2 cut(s)	104, 1832
BtsCI	GGATG	7 cut(s)	895, 1018, 1075, 1296, 1360, 1479, 1666
BtsI	GCAGTG	1 cut(s)	1221
BtsIMutI	CAGTG	7 cut(s)	53, 130, 452, 609, 1221, 1468, 1836
Cac8I	GCNNGC	4 cut(s)	92, 599, 792, 1542
CaiI	CAGNNNCTG	1 cut(s)	1625
CfoI	GCGC	3 cut(s)	357, 1697, 1816
Cfr10I	RCCGGY	1 cut(s)	1487
Cfr13I	GGNCC	3 cut(s)	485, 681, 1438
CseI	GACGC	3 cut(s)	379, 1442, 1615
Csp6I	GTAC	5 cut(s)	895, 1139, 1183, 1378, 1871
CspAI	ACCGGT	1 cut(s)	1487
CspCI	CAANNNNNGTGG	2 cut(s)	1225, 1260
CviQI	GTAC	5 cut(s)	895, 1139, 1183, 1378, 1871
DdeI	CTNAG	4 cut(s)	72, 455, 712, 1691
DpnI	GATC	4 cut(s)	236, 660, 868, 1665
DpnII	GATC	4 cut(s)	234, 658, 866, 1663
DraIII	CACNNNGTG	1 cut(s)	761
EaeI	YGGCCR	2 cut(s)	66, 1542
Eam1104I	CTCTTC	4 cut(s)	200, 549, 804, 1520
EarI	CTCTTC	4 cut(s)	200, 549, 804, 1520
Eco130I	CCWWGG	3 cut(s)	1230, 1434, 1467
Eco147I	AGGCCT	1 cut(s)	1675
Eco32I	GATATC	3 cut(s)	212, 443, 1780
Eco47I	GGWCC	2 cut(s)	681, 1438
Eco47III	AGCGCT	1 cut(s)	1696
EcoRII	CCWGG	4 cut(s)	150, 727, 1666, 1678
EcoRV	GATATC	3 cut(s)	212, 443, 1780
EcoT14I	CCWWGG	3 cut(s)	1230, 1434, 1467
EcoT22I	ATGCAT	2 cut(s)	466, 1408
ErhI	CCWWGG	3 cut(s)	1230, 1434, 1467
Esp3I	CGTCTC	2 cut(s)	110, 1460
FalI	AAGNNNNNCTT	2 cut(s)	1267, 1299
FaqI	GGGAC	2 cut(s)	694, 1706
FauI	CCCGC	1 cut(s)	951
Fnu4HI	GCNGC	7 cut(s)	142, 374, 582, 801, 1193, 1385, 1698
FokI	GGATG	7 cut(s)	902, 1025, 1082, 1283, 1367, 1466, 1673
Fsp4HI	GCNGC	7 cut(s)	142, 374, 582, 801, 1193, 1385, 1698
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	3 cut(s)	356, 1696, 1815
GluI	GCNGC	7 cut(s)	142, 374, 582, 801, 1193, 1385, 1698
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	4 cut(s)	711, 1104, 1593, 1662
HaeII	RGCGCY	1 cut(s)	1698
HaeIII	GGCC	4 cut(s)	68, 486, 1544, 1675
HapII	CCGG	2 cut(s)	168, 1488
HgaI	GACGC	3 cut(s)	379, 1442, 1615
HhaI	GCGC	3 cut(s)	357, 1697, 1816
Hin6I	GCGC	3 cut(s)	355, 1695, 1814
HinP1I	GCGC	3 cut(s)	355, 1695, 1814
HincII	GTYRAC	2 cut(s)	1029, 1393
HindII	GTYRAC	2 cut(s)	1029, 1393
HindIII	AAGCTT	3 cut(s)	249, 419, 951
HinfI	GANTC	5 cut(s)	301, 939, 1003, 1018, 1063
HpaII	CCGG	2 cut(s)	168, 1488
HphI	GGTGA	6 cut(s)	122, 206, 621, 683, 848, 1502
Hpy166II	GTNNAC	7 cut(s)	269, 653, 755, 839, 1029, 1369, 1393
Hpy188I	TCNGA	6 cut(s)	47, 75, 85, 715, 821, 1263
Hpy8I	GTNNAC	7 cut(s)	269, 653, 755, 839, 1029, 1369, 1393
Hpy99I	CGWCG	2 cut(s)	176, 1609
HpyCH4III	ACNGT	4 cut(s)	125, 877, 1033, 1187
HpyCH4IV	ACGT	3 cut(s)	103, 1243, 1831
HpyF10VI	GCNNNNNNNGC	5 cut(s)	382, 581, 800, 1412, 1820
HpyF3I	CTNAG	4 cut(s)	72, 455, 712, 1691
HpySE526I	ACGT	3 cut(s)	103, 1243, 1831
HspAI	GCGC	3 cut(s)	355, 1695, 1814
Kzo9I	GATC	4 cut(s)	234, 658, 866, 1663
LguI	GCTCTTC	2 cut(s)	804, 1520
LmnI	GCTCC	3 cut(s)	170, 730, 1106
Lsp1109I	GCAGC	7 cut(s)	153, 385, 568, 812, 1204, 1396, 1684
LweI	GCATC	4 cut(s)	473, 529, 1592, 1806
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	3 cut(s)	103, 1243, 1831
MaeIII	GTNAC	3 cut(s)	1327, 1832, 1851
MalI	GATC	4 cut(s)	236, 660, 868, 1665
MboI	GATC	4 cut(s)	234, 658, 866, 1663
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	757, 1692
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	7 cut(s)	296, 335, 475, 576, 831, 918, 1130
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	310, 1057
MmeI	TCCRAC	1 cut(s)	1181
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	2 cut(s)	466, 1408
MroXI	GAANNNNTTC	2 cut(s)	420, 1282
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	333, 548, 707
MslI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	1387
MspI	CCGG	2 cut(s)	168, 1488
MspR9I	CCNGG	4 cut(s)	152, 729, 1668, 1680
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	103, 1406
MvaI	CCWGG	4 cut(s)	152, 729, 1668, 1680
MvnI	CGCG	1 cut(s)	958
MwoI	GCNNNNNNNGC	5 cut(s)	382, 581, 800, 1412, 1820
NdeII	GATC	4 cut(s)	234, 658, 866, 1663
NlaIV	GGNNCC	6 cut(s)	166, 321, 344, 682, 1108, 1155
NmeAIII	GCCGAG	1 cut(s)	1570
NmuCI	GTSAC	2 cut(s)	1832, 1851
NsiI	ATGCAT	2 cut(s)	466, 1408
NspI	RCATGY	4 cut(s)	721, 1199, 1346, 1534
PceI	AGGCCT	1 cut(s)	1675
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	2 cut(s)	804, 1520
PctI	GAATGC	2 cut(s)	103, 1406
PdmI	GAANNNNTTC	2 cut(s)	420, 1282
PfeI	GAWTC	3 cut(s)	939, 1003, 1018
PflMI	CCANNNNNTGG	1 cut(s)	244
PfoI	TCCNGGA	2 cut(s)	727, 1666
PinAI	ACCGGT	1 cut(s)	1487
PkrI	GCNGC	7 cut(s)	143, 375, 583, 802, 1194, 1386, 1699
PleI	GAGTC	2 cut(s)	309, 1057
PpsI	GAGTC	2 cut(s)	309, 1057
PscI	ACATGT	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	1559
Psp6I	CCWGG	4 cut(s)	150, 727, 1666, 1678
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	4 cut(s)	150, 727, 1666, 1678
PspN4I	GGNNCC	6 cut(s)	166, 321, 344, 682, 1108, 1155
PspPI	GGNCC	3 cut(s)	485, 681, 1438
PstNI	CAGNNNCTG	1 cut(s)	1625
PsuI	RGATCY	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	1387
RsaI	GTAC	5 cut(s)	896, 1140, 1184, 1379, 1872
RsaNI	GTAC	5 cut(s)	895, 1139, 1183, 1378, 1871
RseI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
SapI	GCTCTTC	2 cut(s)	804, 1520
SaqAI	TTAA	3 cut(s)	333, 548, 707
SatI	GCNGC	7 cut(s)	142, 374, 582, 801, 1193, 1385, 1698
Sau3AI	GATC	4 cut(s)	234, 658, 866, 1663
Sau96I	GGNCC	3 cut(s)	485, 681, 1438
SchI	GAGTC	2 cut(s)	310, 1057
ScrFI	CCNGG	4 cut(s)	152, 729, 1668, 1680
SduI	GDGCHC	2 cut(s)	757, 1692
SfaNI	GCATC	4 cut(s)	473, 529, 1592, 1806
SinI	GGWCC	2 cut(s)	681, 1438
SmiMI	CAYNNNNRTG	4 cut(s)	276, 362, 1013, 1200
SmlI	CTYRAG	1 cut(s)	1512
SmoI	CTYRAG	1 cut(s)	1512
Sse9I	AATT	7 cut(s)	296, 335, 475, 576, 831, 918, 1130
SseBI	AGGCCT	1 cut(s)	1675
SsiI	CCGC	6 cut(s)	217, 480, 646, 742, 958, 1441
SspMI	CTAG	1 cut(s)	759
StuI	AGGCCT	1 cut(s)	1675
StyD4I	CCNGG	4 cut(s)	150, 727, 1666, 1678
StyI	CCWWGG	3 cut(s)	1230, 1434, 1467
TaaI	ACNGT	4 cut(s)	125, 877, 1033, 1187
TaiI	ACGT	3 cut(s)	106, 1246, 1834
TaqI	TCGA	8 cut(s)	120, 304, 424, 445, 513, 544, 1200, 1861
TasI	AATT	7 cut(s)	296, 335, 475, 576, 831, 918, 1130
TatI	WGTACW	2 cut(s)	894, 1377
TfiI	GAWTC	3 cut(s)	939, 1003, 1018
Tru1I	TTAA	3 cut(s)	333, 548, 707
Tru9I	TTAA	3 cut(s)	333, 548, 707
TscAI	CASTG	7 cut(s)	60, 130, 459, 609, 1221, 1468, 1843
TseFI	GTSAC	2 cut(s)	1832, 1851
TseI	GCWGC	7 cut(s)	141, 373, 581, 800, 1192, 1384, 1697
Tsp45I	GTSAC	2 cut(s)	1832, 1851
TspDTI	ATGAA	5 cut(s)	380, 429, 995, 1371, 1866
TspGWI	ACGGA	1 cut(s)	1842
TspRI	CASTG	7 cut(s)	60, 130, 459, 609, 1221, 1468, 1843
Van91I	CCANNNNNTGG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	2 cut(s)	681, 1438
XapI	RAATTY	2 cut(s)	335, 1130
XceI	RCATGY	4 cut(s)	721, 1199, 1346, 1534
XmnI	GAANNNNTTC	2 cut(s)	420, 1282
XspI	CTAG	1 cut(s)	759
Zsp2I	ATGCAT	2 cut(s)	466, 1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.