Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Reverse (-)

34744160 .. 34748301

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45220.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAGCAAGAGGGAAGAAGCTACTGATTCTCTACGCCACCGAAACTGGGAACGCCTTGGACGCCGCCGAGCGAATCGGCCGCGAAGCCGAGCGCAGAGGCTGCTCCGTCCAGCTTCTCTCCCTCGACCAATACGACGCCAGTTGCTTGCCTCAGGAGGGCGCTGTAATTTTCGTTGTTTCTACCACCGGCCAGGGCGACACTCCCGATTCGATGAAGGGATTTTGGAAGTATCTATTGCAGAGAAATCTAATTAGGCAATGGCTGGATGGACTTCACTATGCTGTTTTTGGTTTGGGTGATTCTGGTTACCAAAAATTTAATTTTGTTGCGAAGAAGCTAGACAGGAGGCTTTTGGATCTCGGGGCAACGCCTATCATGGAAAGAGGTTTAGGAGATGATCAGCACCCGTCCGGATATGAAGCTGCTCTGGATCCTTGGATGGCATCTTTGTGGAAGATGTTGAATGCAATCGATTTGAGCTATTTCCCGAGTGGCCCTGACTTTCTGATTCCGTATGAGGATTTGATTGCTCAACCGAAAATTCGGATTGTGTATCATGACATTGACAGGGTGGATTCACAGCTTTCAAATGGTTCAGACTTGAATCGCGTTGAGTTGCAGATTGAAAGGGCTCGCGACATGTCTGCTGTAAAGTATTCTCTTGACAAGAATAGGCCCGACTGCATTCTTAAATTGGTCAAAAATCTACCATTGACTAAATCAAGTAGTAAAGATAAAGAGGTGCATCACTTCGAATTTGAATTTGTTTCATCTGCTGTTGAATATGAAGTCGGTGACGTCCTTGATATTCTCCCCAGTCAAGATCCTGCTGCAGTGGATGCTTTCATACTTTGTTGTAATTTGGACCCTGAATCATTCATCACGGTCCATAATTCTGAGATGGAAAATCAGCTTCTTCATACTCATGTCCCCATCAAATTAAGAACTTTCGTTGAGTTGACAATGGATGTTGCTTCAGCTTCTCCTAGACGCTATTTCTTCGAGGCAAGATTCAGTCATGAGTATGTTTGCAACAGCCGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

350

Amino Acids

39.51

Weight (kDa)

5.2

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	10 - 147	3.5e-37	Flavodoxin
FAD_binding_1	PF00667	229 - 336	5e-11	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	804
AccII	CGCG	3 cut(s)	84, 612, 639
AccIII	TCCGGA	1 cut(s)	413
AciI	CCGC	2 cut(s)	66, 82
AclWI	GGATC	4 cut(s)	366, 428, 441, 821
AcoI	YGGCCR	2 cut(s)	79, 190
AcsI	RAATTY	4 cut(s)	317, 543, 758, 764
AcuI	CTGAAG	1 cut(s)	963
AcyI	GRCGYC	3 cut(s)	63, 138, 801
AfiI	CCNNNNNNNGG	2 cut(s)	48, 158
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	6 cut(s)	466, 591, 607, 629, 764, 785
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	8 cut(s)	22, 115, 340, 425, 483, 586, 916, 983
AluI	AGCT	8 cut(s)	22, 115, 340, 425, 483, 586, 916, 983
AlwI	GGATC	4 cut(s)	366, 428, 441, 821
AlwNI	CAGNNNCTG	1 cut(s)	102
Ama87I	CYCGRG	2 cut(s)	362, 490
Aor13HI	TCCGGA	1 cut(s)	413
AoxI	GGCC	4 cut(s)	79, 190, 496, 677
ApeKI	GCWGC	3 cut(s)	102, 425, 833
ApoI	RAATTY	4 cut(s)	317, 543, 758, 764
AspLEI	GCGC	2 cut(s)	96, 164
AspS9I	GGNCC	4 cut(s)	497, 678, 868, 889
AsuHPI	GGTGA	2 cut(s)	311, 809
AsuII	TTCGAA	1 cut(s)	756
AvaI	CYCGRG	2 cut(s)	362, 490
AvaII	GGWCC	2 cut(s)	868, 889
AxyI	CCTNAGG	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	637
BbvI	GCAGC	3 cut(s)	89, 412, 820
BccI	CCATC	4 cut(s)	263, 436, 898, 944
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	2 cut(s)	341, 990
BfmI	CTRYAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	5 cut(s)	66, 82, 103, 426, 834
BlsI	GCNGC	5 cut(s)	67, 83, 104, 427, 835
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	868, 889
BmeT110I	CYCGRG	2 cut(s)	362, 490
BmgT120I	GGNCC	4 cut(s)	497, 678, 868, 889
BmiI	GGNNCC	2 cut(s)	435, 870
BmrFI	CCNGG	1 cut(s)	194
BmrI	ACTGGG	2 cut(s)	57, 813
BmsI	GCATC	3 cut(s)	455, 757, 832
BmuI	ACTGGG	2 cut(s)	57, 813
Bpu14I	TTCGAA	1 cut(s)	756
Bsa29I	ATCGAT	1 cut(s)	474
BsaHI	GRCGYC	3 cut(s)	63, 138, 801
BsaJI	CCNNGG	3 cut(s)	57, 193, 437
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 158
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	52, 141, 819
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	57, 193, 437
BseGI	GGATG	4 cut(s)	274, 447, 847, 976
BseLI	CCNNNNNNNGG	2 cut(s)	48, 158
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	167, 891
BseNI	ACTGG	3 cut(s)	52, 141, 819
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	89, 412, 820
Bsh1236I	CGCG	3 cut(s)	84, 612, 639
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	4 cut(s)	81, 192, 498, 679
BshVI	ATCGAT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	362, 490
BsiSI	CCGG	2 cut(s)	189, 414
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	2 cut(s)	48, 158
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	2 cut(s)	472, 687
BsnI	GGCC	4 cut(s)	81, 192, 498, 679
BsoBI	CYCGRG	2 cut(s)	362, 490
Bsp119I	TTCGAA	1 cut(s)	756
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp13I	TCCGGA	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	358, 400, 433, 826
Bsp68I	TCGCGA	1 cut(s)	639
BspACI	CCGC	2 cut(s)	66, 82
BspANI	GGCC	4 cut(s)	81, 192, 498, 679
BspCNI	CTCAG	2 cut(s)	166, 892
BspDI	ATCGAT	1 cut(s)	474
BspEI	TCCGGA	1 cut(s)	413
BspFNI	CGCG	3 cut(s)	84, 612, 639
BspHI	TCATGA	2 cut(s)	559, 1021
BspLI	GGNNCC	2 cut(s)	435, 870
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	4 cut(s)	366, 428, 441, 821
BspT104I	TTCGAA	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	52, 141, 819
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	57, 193, 437
BssMI	GATC	4 cut(s)	358, 400, 433, 826
BssNI	GRCGYC	3 cut(s)	63, 138, 801
BssT1I	CCWWGG	2 cut(s)	57, 437
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	889
BstACI	GRCGYC	3 cut(s)	63, 138, 801
BstAPI	GCANNNNNTGC	2 cut(s)	102, 842
BstBI	TTCGAA	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	149, 637
BstDEI	CTNAG	2 cut(s)	153, 900
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	4 cut(s)	274, 447, 847, 976
BstFNI	CGCG	3 cut(s)	84, 612, 639
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	96, 164
BstKTI	GATC	4 cut(s)	361, 403, 436, 829
BstMBI	GATC	4 cut(s)	358, 400, 433, 826
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 102, 842
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	646
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	3 cut(s)	84, 612, 639
BstV1I	GCAGC	3 cut(s)	89, 412, 820
BstX2I	RGATCY	3 cut(s)	358, 433, 826
BstYI	RGATCY	3 cut(s)	358, 433, 826
BstZI	CGGCCG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	4 cut(s)	81, 192, 498, 679
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	274, 447, 847, 976
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	843
BtuMI	TCGCGA	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	149, 637
CaiI	CAGNNNCTG	1 cut(s)	102
CciI	TCATGA	2 cut(s)	559, 1021
CfoI	GCGC	2 cut(s)	96, 164
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	4 cut(s)	497, 678, 868, 889
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	3 cut(s)	71, 146, 1002
CviAII	CATG	6 cut(s)	379, 560, 643, 929, 1022, 1047
DdeI	CTNAG	2 cut(s)	153, 900
DpnI	GATC	4 cut(s)	360, 402, 435, 828
DpnII	GATC	4 cut(s)	358, 400, 433, 826
EaeI	YGGCCR	2 cut(s)	79, 190
EagI	CGGCCG	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	57, 437
Eco24I	GRGCYC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	868, 889
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	963
Eco81I	CCTNAGG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	362, 490
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	57, 437
EcoT38I	GRGCYC	1 cut(s)	637
ErhI	CCWWGG	2 cut(s)	57, 437
FaeI	CATG	6 cut(s)	382, 563, 646, 932, 1025, 1050
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	6 cut(s)	378, 559, 642, 928, 1021, 1046
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	5 cut(s)	66, 82, 103, 426, 834
FokI	GGATG	4 cut(s)	281, 454, 854, 983
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	5 cut(s)	66, 82, 103, 426, 834
FspBI	CTAG	2 cut(s)	341, 990
GlaI	GCGC	2 cut(s)	95, 163
GluI	GCNGC	5 cut(s)	66, 82, 103, 426, 834
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	81, 192, 498, 679
HapII	CCGG	2 cut(s)	189, 414
HgaI	GACGC	3 cut(s)	71, 146, 1002
HhaI	GCGC	2 cut(s)	96, 164
Hin1I	GRCGYC	3 cut(s)	63, 138, 801
Hin1II	CATG	6 cut(s)	382, 563, 646, 932, 1025, 1050
Hin6I	GCGC	2 cut(s)	94, 162
HinP1I	GCGC	2 cut(s)	94, 162
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HinfI	GANTC	9 cut(s)	28, 75, 209, 302, 511, 578, 607, 875, 1014
HpaII	CCGG	2 cut(s)	189, 414
HphI	GGTGA	2 cut(s)	311, 809
Hpy166II	GTNNAC	1 cut(s)	963
Hpy188I	TCNGA	4 cut(s)	510, 549, 601, 901
Hpy8I	GTNNAC	1 cut(s)	963
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	7 cut(s)	241, 470, 622, 687, 748, 836, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 102, 842
HpyF3I	CTNAG	2 cut(s)	153, 900
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	3 cut(s)	63, 138, 801
Hsp92II	CATG	6 cut(s)	382, 563, 646, 932, 1025, 1050
HspAI	GCGC	2 cut(s)	94, 162
Kpn2I	TCCGGA	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	358, 400, 433, 826
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	89, 412, 820
LweI	GCATC	3 cut(s)	455, 757, 832
MaeI	CTAG	2 cut(s)	341, 990
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	308, 797
MalI	GATC	4 cut(s)	360, 402, 435, 828
MboI	GATC	4 cut(s)	358, 400, 433, 826
MboII	GAAGA	5 cut(s)	28, 346, 469, 911, 994
MflI	RGATCY	3 cut(s)	358, 433, 826
MhlI	GDGCHC	1 cut(s)	637
MroI	TCCGGA	1 cut(s)	413
MseI	TTAA	3 cut(s)	321, 693, 944
MslI	CAYNNNNRTG	3 cut(s)	451, 927, 1026
MspI	CCGG	2 cut(s)	189, 414
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	2 cut(s)	472, 687
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	3 cut(s)	84, 612, 639
MwoI	GCNNNNNNNGC	3 cut(s)	62, 102, 842
NdeII	GATC	4 cut(s)	358, 400, 433, 826
NlaIII	CATG	6 cut(s)	382, 563, 646, 932, 1025, 1050
NlaIV	GGNNCC	2 cut(s)	435, 870
NmeAIII	GCCGAG	2 cut(s)	94, 115
NmuCI	GTSAC	1 cut(s)	797
NruI	TCGCGA	1 cut(s)	639
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	756
PagI	TCATGA	2 cut(s)	559, 1021
PciI	ACATGT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	472, 687
PfeI	GAWTC	9 cut(s)	28, 75, 209, 302, 511, 578, 607, 875, 1014
PkrI	GCNGC	5 cut(s)	67, 83, 104, 427, 835
PscI	ACATGT	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	435, 870
PspPI	GGNCC	4 cut(s)	497, 678, 868, 889
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	3 cut(s)	358, 433, 826
RruI	TCGCGA	1 cut(s)	639
RseI	CAYNNNNRTG	3 cut(s)	451, 927, 1026
SaqAI	TTAA	3 cut(s)	321, 693, 944
SatI	GCNGC	5 cut(s)	66, 82, 103, 426, 834
Sau3AI	GATC	4 cut(s)	358, 400, 433, 826
Sau96I	GGNCC	4 cut(s)	497, 678, 868, 889
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	455, 757, 832
SfcI	CTRYAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	756
SinI	GGWCC	2 cut(s)	868, 889
SmiMI	CAYNNNNRTG	3 cut(s)	451, 927, 1026
SsiI	CCGC	2 cut(s)	66, 82
SspMI	CTAG	2 cut(s)	341, 990
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	57, 437
TaaI	ACNGT	1 cut(s)	889
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	5 cut(s)	126, 212, 474, 756, 1005
TauI	GCSGC	2 cut(s)	68, 84
TfiI	GAWTC	9 cut(s)	28, 75, 209, 302, 511, 578, 607, 875, 1014
Tru1I	TTAA	3 cut(s)	321, 693, 944
Tru9I	TTAA	3 cut(s)	321, 693, 944
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	3 cut(s)	102, 425, 833
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	7 cut(s)	230, 435, 762, 804, 838, 871, 911
TspGWI	ACGGA	2 cut(s)	97, 504
TspRI	CASTG	1 cut(s)	843
VpaK11BI	GGWCC	2 cut(s)	868, 889
XapI	RAATTY	4 cut(s)	317, 543, 758, 764
XceI	RCATGY	1 cut(s)	646
XspI	CTAG	2 cut(s)	341, 990
ZraI	GACGTC	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.