Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006129.1

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

2898 .. 5122

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006129.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgtcctctgtaaagtattctcttgacaagaataggcctgactgcattcttaaattggtcaagaatcaaccattgactaaatcaagtagtaaagataaagaggtgcatcacttcgaatttgaatttgtttcatctgctattgaatatgaagtcggtgacgtccttgagattctccccagtcaaaatcctgctgcagtagatgctttcctacttcgttgtaatttggaccctgaagcattcatcactgtccaccctttagagacggagaatcagcttcttgatactcaagttcccatcaaattaaaaacttttgttgagttgacaatggatgttgcttcagcttcccctagacgttatttctttgaggtcatgagtatgtttgcaacagctgagcatgaaaaggaaagacttcagtattttgtgtcacctgaaggaagagatgacctatatcaatacaatcagagggaacggaggactgttctggaggtgttagaggatttcccctccgttcaaatgccatttgaatggctggtacagttggttcctcctttgaaaacgagggctttctccatctcctcctccccttcggttcaccctaatcaagtgcacttaacagtgagtgtagtattatggacaacacctttcaaaagaaatcgagcaggtctttgctcaagttggctagccaagcttgagcctgaacaacgtgttcatgttccagtgtggttccagaaaggctcccttcgtcccccaccaccatcacttcctcttattctcgttggacctggaactggatgtgcgccctttcgtggattcattgaggaaagagccatacaaagtttgactggttctactgctccagtcatgttcttttttggatgcagaaatgaagacaacgatttcttatacaaagagttttggttatctcattcgcaaaacaacggggtactttcagaagcgaagggtggaggcttttatgttgccttctcaagagaccagccacagaaagtctatgtgcagcataagatgtgggaacatagccacagggtgtggaatttgcttagtgagggggctgcaatctatgtagctggttcttcgacaaaaatgccctcagatgtattattagcgtttgaggaaattatctccaaagaaagtgggcttcctcaggaatctgcagtcagatggcttagggctctggaaaaggctggcaaataccatgttgaagcatggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

410

Amino Acids

46.68

Weight (kDa)

6.09

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	650
AcsI	RAATTY	3 cut(s)	116, 122, 1051
AcuI	CTGAAG	4 cut(s)	252, 321, 395, 450
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	1045
AfaI	GTAC	2 cut(s)	534, 945
AfiI	CCNNNNNNNGG	2 cut(s)	788, 806
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	7 cut(s)	122, 143, 512, 524, 553, 646, 1220
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	5 cut(s)	274, 341, 389, 688, 1085
AluI	AGCT	5 cut(s)	274, 341, 389, 688, 1085
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	254, 984
Alw44I	GTGCAC	1 cut(s)	605
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	191, 1015, 1070
ApoI	RAATTY	3 cut(s)	116, 122, 1051
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	799
AspS9I	GGNCC	2 cut(s)	226, 779
AsuHPI	GGTGA	3 cut(s)	167, 417, 584
AsuII	TTCGAA	1 cut(s)	114
AsuNHI	GCTAGC	1 cut(s)	679
AvaII	GGWCC	2 cut(s)	226, 779
AxyI	CCTNAGG	1 cut(s)	1161
BaeGI	GKGCMC	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BanII	GRGCYC	1 cut(s)	1192
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	178, 1027, 1057
BccI	CCATC	4 cut(s)	302, 578, 763, 1173
BcgI	CGANNNNNNTGC	2 cut(s)	1084, 1118
BciT130I	CCWGG	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	254, 984
BfaI	CTAG	2 cut(s)	348, 680
BfmI	CTRYAG	2 cut(s)	192, 1170
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	3 cut(s)	192, 1016, 1071
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	193, 1017, 1072
Bme1390I	CCNGG	1 cut(s)	783
Bme18I	GGWCC	2 cut(s)	226, 779
BmgT120I	GGNCC	2 cut(s)	226, 779
BmiI	GGNNCC	4 cut(s)	228, 543, 725, 736
BmrFI	CCNGG	1 cut(s)	783
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	115, 190, 866
BmtI	GCTAGC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	2 cut(s)	503, 840
Bpu10I	CCTNAGC	1 cut(s)	1184
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	5 cut(s)	185, 270, 655, 710, 970
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 806
Bse1I	ACTGG	5 cut(s)	177, 716, 793, 847, 857
Bse21I	CCTNAGG	1 cut(s)	1161
BseBI	CCWGG	1 cut(s)	783
BseGI	GGATG	3 cut(s)	334, 797, 881
BseLI	CCNNNNNNNGG	2 cut(s)	788, 806
BseMII	CTCAG	3 cut(s)	381, 1122, 1175
BseNI	ACTGG	5 cut(s)	177, 716, 793, 847, 857
BseRI	GAGGAG	2 cut(s)	565, 568
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	178, 1027, 1057
BsgI	GTGCAG	1 cut(s)	1034
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	788, 806
BsmAI	GTCTC	2 cut(s)	254, 984
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	729
BsmI	GAATGC	2 cut(s)	45, 236
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	984
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	609, 1192
Bsp1720I	GCTNAGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	3 cut(s)	382, 1121, 1174
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	4 cut(s)	228, 543, 725, 736
BspMAI	CTGCAG	2 cut(s)	196, 1174
BspMI	ACCTGC	1 cut(s)	650
BspOI	GCTAGC	1 cut(s)	683
BspT104I	TTCGAA	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	984
BsrI	ACTGG	5 cut(s)	177, 716, 793, 847, 857
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	4 cut(s)	247, 478, 537, 616
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	681, 1204
BstDEI	CTNAG	5 cut(s)	390, 1058, 1108, 1161, 1184
BstF5I	GGATG	3 cut(s)	334, 797, 881
BstHHI	GCGC	1 cut(s)	799
BstMAI	GTCTC	2 cut(s)	254, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 685
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	2 cut(s)	192, 1170
BstSLI	GKGCMC	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	178, 1027, 1057
BstV2I	GAAGAC	1 cut(s)	894
BstXI	CCANNNNNNTGG	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	1161
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	334, 797, 881
BtsIMutI	CAGTG	3 cut(s)	243, 621, 723
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	681, 1204
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	799
Cfr13I	GGNCC	2 cut(s)	226, 779
Csp6I	GTAC	2 cut(s)	533, 944
CspCI	CAANNNNNGTGG	2 cut(s)	1132, 1167
CviAII	CATG	6 cut(s)	370, 395, 710, 862, 1214, 1224
CviQI	GTAC	2 cut(s)	533, 944
DdeI	CTNAG	5 cut(s)	390, 1058, 1108, 1161, 1184
DraIII	CACNNNGTG	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	1192
Eco31I	GGTCTC	1 cut(s)	984
Eco47I	GGWCC	2 cut(s)	226, 779
Eco57I	CTGAAG	4 cut(s)	252, 321, 395, 450
Eco81I	CCTNAGG	1 cut(s)	1161
EcoRII	CCWGG	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	1192
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	6 cut(s)	373, 398, 713, 865, 1217, 1227
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	6 cut(s)	369, 394, 709, 861, 1213, 1223
Fnu4HI	GCNGC	3 cut(s)	192, 1016, 1071
FokI	GGATG	3 cut(s)	341, 804, 888
FriOI	GRGCYC	1 cut(s)	1192
Fsp4HI	GCNGC	3 cut(s)	192, 1016, 1071
FspBI	CTAG	2 cut(s)	348, 680
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	3 cut(s)	192, 1016, 1071
GsuI	CTGGAG	2 cut(s)	503, 840
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	799
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	373, 398, 713, 865, 1217, 1227
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	64, 169, 268, 810, 1166
HphI	GGTGA	3 cut(s)	167, 417, 584
Hpy166II	GTNNAC	4 cut(s)	250, 321, 592, 607
Hpy188I	TCNGA	4 cut(s)	462, 952, 1111, 1178
Hpy188III	TCNNGA	9 cut(s)	23, 61, 278, 370, 482, 727, 987, 1163, 1193
Hpy8I	GTNNAC	4 cut(s)	250, 321, 592, 607
HpyAV	CCTTC	5 cut(s)	425, 594, 749, 952, 991
HpyCH4III	ACNGT	4 cut(s)	247, 478, 537, 616
HpyCH4IV	ACGT	3 cut(s)	159, 352, 703
HpyCH4V	TGCA	9 cut(s)	45, 106, 194, 383, 607, 879, 1015, 1073, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 685
HpyF3I	CTNAG	5 cut(s)	390, 1058, 1108, 1161, 1184
HpySE526I	ACGT	3 cut(s)	159, 352, 703
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	373, 398, 713, 865, 1217, 1227
HspAI	GCGC	1 cut(s)	797
LmnI	GCTCC	2 cut(s)	740, 859
Lsp1109I	GCAGC	3 cut(s)	178, 1027, 1057
LweI	GCATC	3 cut(s)	115, 190, 866
MaeI	CTAG	2 cut(s)	348, 680
MaeII	ACGT	3 cut(s)	159, 352, 703
MaeIII	GTNAC	2 cut(s)	155, 423
MboII	GAAGA	3 cut(s)	447, 899, 1083
MhlI	GDGCHC	2 cut(s)	609, 1192
MluCI	AATT	7 cut(s)	53, 116, 122, 220, 299, 1051, 1134
MmeI	TCCRAC	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	3 cut(s)	51, 302, 611
MslI	CAYNNNNRTG	2 cut(s)	374, 523
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	45, 236
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	200, 685
NheI	GCTAGC	1 cut(s)	679
NlaIII	CATG	6 cut(s)	373, 398, 713, 865, 1217, 1227
NlaIV	GGNNCC	4 cut(s)	228, 543, 725, 736
NmuCI	GTSAC	2 cut(s)	155, 423
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	2 cut(s)	45, 236
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	5 cut(s)	64, 169, 268, 810, 1166
PkrI	GCNGC	3 cut(s)	193, 1017, 1072
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	4 cut(s)	228, 543, 725, 736
PspPI	GGNCC	2 cut(s)	226, 779
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	2 cut(s)	196, 1174
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	534, 945
RsaNI	GTAC	2 cut(s)	533, 944
RseI	CAYNNNNRTG	2 cut(s)	374, 523
SaqAI	TTAA	3 cut(s)	51, 302, 611
SatI	GCNGC	3 cut(s)	192, 1016, 1071
Sau96I	GGNCC	2 cut(s)	226, 779
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	2 cut(s)	609, 1192
SfaNI	GCATC	3 cut(s)	115, 190, 866
SfcI	CTRYAG	2 cut(s)	192, 1170
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	2 cut(s)	226, 779
SmiMI	CAYNNNNRTG	2 cut(s)	374, 523
SmlI	CTYRAG	5 cut(s)	164, 285, 670, 689, 985
SmoI	CTYRAG	5 cut(s)	164, 285, 670, 689, 985
Sse9I	AATT	7 cut(s)	53, 116, 122, 220, 299, 1051, 1134
SseBI	AGGCCT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	348, 680
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	781
TaaI	ACNGT	4 cut(s)	247, 478, 537, 616
TaiI	ACGT	3 cut(s)	162, 355, 706
TaqI	TCGA	3 cut(s)	114, 655, 1094
TasI	AATT	7 cut(s)	53, 116, 122, 220, 299, 1051, 1134
TfiI	GAWTC	5 cut(s)	64, 169, 268, 810, 1166
Tru1I	TTAA	3 cut(s)	51, 302, 611
Tru9I	TTAA	3 cut(s)	51, 302, 611
TscAI	CASTG	3 cut(s)	250, 621, 723
TseFI	GTSAC	2 cut(s)	155, 423
TseI	GCWGC	3 cut(s)	191, 1015, 1070
Tsp45I	GTSAC	2 cut(s)	155, 423
TspDTI	ATGAA	7 cut(s)	120, 162, 229, 411, 698, 802, 900
TspGWI	ACGGA	3 cut(s)	278, 484, 496
TspRI	CASTG	3 cut(s)	250, 621, 723
VneI	GTGCAC	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	226, 779
XapI	RAATTY	3 cut(s)	116, 122, 1051
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	348, 680
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.