Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

952206 .. 954553

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01260.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCGAAACCAAAGGTTCGGATTCTATATCACGACATTGACAAGGTGGATTCACAAATTCATCTAAATCAGATGTACTTGAATCACGTTGTGCTGCAGATTGAAAGGGCACGCAGAATGTCTCCTGTGAAGTTTTCTCTTGACAAGCCTGACTGCATTCTTAAATTGGTAAAAAATGAACCACTGACTAAATCAGGTTTTAAAGACAAAGAGGTGCATCACTTCGAATTTGAATTTGTTACATCTCCTATTCCCTATGAAGTTGGTGACGTCCTTGAGGTTCTCCCCAGTCAAAATCCTGCTGCAGTGGATGTTTTCATACGTCGTTGTAATTTGGACCCTGAATCATTCATCACAGTTCATCCTTCAGAAATGGAGAATCAACTCCTTGATACTTGTATCCCCATCAAACTAAAAACTTTTGTTGAATTGACAATGGATGTTGCATCCGCTTCTCCTCGACGCTATTTCTTTGAGGTCATGAGTATGTTTGCAACCGCTGAACATGAAAAAGAAAGACTTCAGTATTTTATCTCACCTGAAGGAAGAGATGATCTATACCAATACAATCAGAGGGAACGAAGGACTGTGCTGGAGGTTTTAGAGGATTTCCCCTCTGTTCAAATGCCATTTGAATGGCTGGTACAGTTGGTTCCTCCTTTGAAAACAAGGGCTTTCTCCATCTCTTCGTCCCCGTCCGCCCACCTCAATCAAGTTCACTTAACAGTTAATGTATTATCATGGACAACGCCGTTCAAAAGAATTCGAGCAGGTCTCTGCTCAAATTGGCTATCCAAGCTTGATCCTGAGCAAGGTGTTTATGTTCCAGTGTGGTTTCAGAAAGGTTCCCTTCCTTCCCCACGACCATCACTTCCTCTGATTCTCATTGGACCTGGAACCGGCTGTGCGCCTTTTCGTGGATTTGTGGAGGAAAGAGCCATACAAAGTTTGACCGAATCAACTGCTCCAGTGCTGTTCTTCTTTGGATGCAGAAACGAGGACAATGATTTTTTGTACAAAGATTTTTGGTTATCCAATTCGCAAGATGGTGGGGTACTTTCAGAAGCAAAGGGCGGGGGCTTTTATGTTGCCTTCTCAAGAGACCAGCCACAGAAGGTCTACGTGCAGGATAAGATGAGGGAACATAGCGAGAAGGTGTGGAAGCTGCTGATGGAGGGGGCGGCTATTTACGTTGCAGGTTCTTCTACAAAAATGCCAGCAGATGTATTATTAGCCTTTGAGGAGATTGTTTCCAAAGAAAGTGAGCTTCCACAGGAATCGGCAGCGAGATGGCTTAGAGAACTGGAAAAGGCTGGCAGATACCATGTTGAAGCGTGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

448

Amino Acids

51.23

Weight (kDa)

5.85

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	761, 1187
AccI	GTMKAC	1 cut(s)	1119
AciI	CCGC	5 cut(s)	450, 498, 699, 1074, 1181
AclWI	GGATC	1 cut(s)	797
AcsI	RAATTY	4 cut(s)	57, 227, 233, 762
AcuI	CTGAAG	3 cut(s)	351, 506, 561
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	4 cut(s)	77, 645, 1016, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	812, 899, 917
AgsI	TTSAA	9 cut(s)	82, 104, 233, 428, 623, 635, 664, 757, 1331
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	3 cut(s)	799, 1165, 1267
AluI	AGCT	3 cut(s)	799, 1165, 1267
Alw26I	GTCTC	3 cut(s)	126, 779, 1095
AlwI	GGATC	1 cut(s)	797
ApeKI	GCWGC	4 cut(s)	94, 302, 1165, 1283
ApoI	RAATTY	4 cut(s)	57, 227, 233, 762
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	2 cut(s)	337, 890
AsuHPI	GGTGA	2 cut(s)	278, 528
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	337, 890
BaeGI	GKGCMC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	81, 289, 1152, 1295
BccI	CCATC	6 cut(s)	413, 689, 874, 1040, 1165, 1284
BceAI	ACGGC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	894
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	126, 779, 1095
BfmI	CTRYAG	2 cut(s)	95, 303
BfuAI	ACCTGC	2 cut(s)	761, 1187
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	5 cut(s)	95, 303, 1166, 1182, 1284
BlsI	GCNGC	5 cut(s)	96, 304, 1167, 1183, 1285
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	2 cut(s)	337, 890
BmgT120I	GGNCC	2 cut(s)	337, 890
BmiI	GGNNCC	4 cut(s)	339, 654, 847, 898
BmrFI	CCNGG	1 cut(s)	894
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	226, 455, 977
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	759, 791
BpmI	CTGGAG	2 cut(s)	614, 951
Bpu10I	CCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	296, 1081
BsaAI	YACGTR	1 cut(s)	1123
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	779, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	812, 899, 917
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	4 cut(s)	288, 827, 968, 1308
BseBI	CCWGG	1 cut(s)	894
BseGI	GGATG	5 cut(s)	316, 361, 445, 446, 992
BseLI	CCNNNNNNNGG	3 cut(s)	812, 899, 917
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	4 cut(s)	288, 827, 968, 1308
BseRI	GAGGAG	2 cut(s)	447, 1256
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	81, 289, 1152, 1295
BsgI	GTGCAG	1 cut(s)	1145
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	3 cut(s)	812, 899, 917
BsmAI	GTCTC	3 cut(s)	126, 779, 1095
BsmFI	GGGAC	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	156
Bso31I	GGTCTC	2 cut(s)	779, 1095
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	1014
Bsp143I	GATC	2 cut(s)	553, 802
BspACI	CCGC	5 cut(s)	450, 498, 699, 1074, 1181
BspCNI	CTCAG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	4 cut(s)	339, 654, 847, 898
BspMAI	CTGCAG	2 cut(s)	99, 307
BspMI	ACCTGC	2 cut(s)	761, 1187
BspPI	GGATC	1 cut(s)	797
BspT104I	TTCGAA	1 cut(s)	225
BspTNI	GGTCTC	2 cut(s)	779, 1095
BsrFI	RCCGGY	1 cut(s)	899
BsrGI	TGTACA	1 cut(s)	1014
BsrI	ACTGG	4 cut(s)	288, 827, 968, 1308
BssAI	RCCGGY	1 cut(s)	899
BssMI	GATC	2 cut(s)	553, 802
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	4 cut(s)	358, 589, 648, 727
Bst6I	CTCTTC	2 cut(s)	541, 691
BstACI	GRCGYC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	1014
BstBAI	YACGTR	1 cut(s)	1123
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	112, 1218, 1315
BstDEI	CTNAG	2 cut(s)	807, 1295
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	5 cut(s)	316, 361, 445, 446, 992
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	2 cut(s)	556, 805
BstMAI	GTCTC	3 cut(s)	126, 779, 1095
BstMBI	GATC	2 cut(s)	553, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	796
BstNI	CCWGG	1 cut(s)	894
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	2 cut(s)	95, 303
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	81, 289, 1152, 1295
BstXI	CCANNNNNNTGG	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	410
BtsCI	GGATG	5 cut(s)	316, 361, 445, 446, 992
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	4 cut(s)	182, 312, 834, 975
BveI	ACCTGC	2 cut(s)	761, 1187
Cac8I	GCNNGC	3 cut(s)	112, 1218, 1315
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	910
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	337, 890
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	4 cut(s)	76, 644, 1015, 1055
CviAII	CATG	4 cut(s)	481, 506, 741, 1325
CviQI	GTAC	4 cut(s)	76, 644, 1015, 1055
DdeI	CTNAG	2 cut(s)	807, 1295
DpnI	GATC	2 cut(s)	555, 804
DpnII	GATC	2 cut(s)	553, 802
DraI	TTTAAA	1 cut(s)	202
DraIII	CACNNNGTG	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	541, 691
EarI	CTCTTC	2 cut(s)	541, 691
EciI	GGCGGA	1 cut(s)	688
Eco31I	GGTCTC	2 cut(s)	779, 1095
Eco47I	GGWCC	2 cut(s)	337, 890
Eco57I	CTGAAG	3 cut(s)	351, 506, 561
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoRI	GAATTC	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	892
FaeI	CATG	4 cut(s)	484, 509, 744, 1328
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 834, 866
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	4 cut(s)	480, 505, 740, 1324
FauI	CCCGC	1 cut(s)	1067
FblI	GTMKAC	1 cut(s)	1119
Fnu4HI	GCNGC	5 cut(s)	95, 303, 1166, 1182, 1284
FokI	GGATG	5 cut(s)	323, 348, 433, 452, 999
Fsp4HI	GCNGC	5 cut(s)	95, 303, 1166, 1182, 1284
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	5 cut(s)	95, 303, 1166, 1182, 1284
GsuI	CTGGAG	2 cut(s)	614, 951
HapII	CCGG	1 cut(s)	900
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	1 cut(s)	910
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	484, 509, 744, 1328
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	8 cut(s)	22, 50, 82, 344, 379, 880, 956, 1277
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	2 cut(s)	278, 528
Hpy166II	GTNNAC	2 cut(s)	718, 1120
Hpy188I	TCNGA	7 cut(s)	21, 72, 370, 573, 840, 879, 1063
Hpy188III	TCNNGA	5 cut(s)	32, 140, 481, 806, 1098
Hpy8I	GTNNAC	2 cut(s)	718, 1120
Hpy99I	CGWCG	2 cut(s)	327, 465
HpyAV	CCTTC	8 cut(s)	375, 536, 576, 860, 864, 1102, 1108, 1147
HpyCH4III	ACNGT	4 cut(s)	358, 589, 648, 727
HpyCH4IV	ACGT	5 cut(s)	87, 270, 322, 1122, 1191
HpyCH4V	TGCA	9 cut(s)	97, 156, 217, 305, 446, 494, 990, 1126, 1196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	796
HpyF3I	CTNAG	2 cut(s)	807, 1295
HpySE526I	ACGT	5 cut(s)	87, 270, 322, 1122, 1191
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	484, 509, 744, 1328
HspAI	GCGC	1 cut(s)	908
Kzo9I	GATC	2 cut(s)	553, 802
LmnI	GCTCC	1 cut(s)	970
Lsp1109I	GCAGC	4 cut(s)	81, 289, 1152, 1295
LweI	GCATC	3 cut(s)	226, 455, 977
MaeII	ACGT	5 cut(s)	87, 270, 322, 1122, 1191
MaeIII	GTNAC	2 cut(s)	238, 266
MalI	GATC	2 cut(s)	555, 804
MboI	GATC	2 cut(s)	553, 802
MboII	GAAGA	4 cut(s)	558, 678, 970, 1194
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	9 cut(s)	57, 164, 227, 233, 331, 428, 762, 784, 1036
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	4 cut(s)	162, 201, 722, 729
MslI	CAYNNNNRTG	2 cut(s)	485, 634
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	1 cut(s)	796
NdeII	GATC	2 cut(s)	553, 802
NlaIII	CATG	4 cut(s)	484, 509, 744, 1328
NlaIV	GGNNCC	4 cut(s)	339, 654, 847, 898
NmuCI	GTSAC	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	225
PagI	TCATGA	1 cut(s)	480
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	8 cut(s)	22, 50, 82, 344, 379, 880, 956, 1277
PkrI	GCNGC	5 cut(s)	96, 304, 1167, 1183, 1285
Ppu21I	YACGTR	1 cut(s)	1123
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	4 cut(s)	339, 654, 847, 898
PspPI	GGNCC	2 cut(s)	337, 890
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PstI	CTGCAG	2 cut(s)	99, 307
RsaI	GTAC	4 cut(s)	77, 645, 1016, 1056
RsaNI	GTAC	4 cut(s)	76, 644, 1015, 1055
RseI	CAYNNNNRTG	2 cut(s)	485, 634
SaqAI	TTAA	4 cut(s)	162, 201, 722, 729
SatI	GCNGC	5 cut(s)	95, 303, 1166, 1182, 1284
Sau3AI	GATC	2 cut(s)	553, 802
Sau96I	GGNCC	2 cut(s)	337, 890
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	226, 455, 977
SfcI	CTRYAG	2 cut(s)	95, 303
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	2 cut(s)	337, 890
SmiMI	CAYNNNNRTG	2 cut(s)	485, 634
SmlI	CTYRAG	2 cut(s)	275, 1096
SmoI	CTYRAG	2 cut(s)	275, 1096
Sse9I	AATT	9 cut(s)	57, 164, 227, 233, 331, 428, 762, 784, 1036
SsiI	CCGC	5 cut(s)	450, 498, 699, 1074, 1181
StyD4I	CCNGG	1 cut(s)	892
TaaI	ACNGT	4 cut(s)	358, 589, 648, 727
TaiI	ACGT	5 cut(s)	90, 273, 325, 1125, 1194
TaqI	TCGA	3 cut(s)	225, 460, 766
TaqII	GACCGA	1 cut(s)	968
TasI	AATT	9 cut(s)	57, 164, 227, 233, 331, 428, 762, 784, 1036
TatI	WGTACW	2 cut(s)	75, 1014
TauI	GCSGC	1 cut(s)	1184
TfiI	GAWTC	8 cut(s)	22, 50, 82, 344, 379, 880, 956, 1277
Tru1I	TTAA	4 cut(s)	162, 201, 722, 729
Tru9I	TTAA	4 cut(s)	162, 201, 722, 729
TscAI	CASTG	4 cut(s)	189, 312, 834, 975
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	4 cut(s)	94, 302, 1165, 1283
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	7 cut(s)	50, 192, 273, 307, 340, 350, 522
TspRI	CASTG	4 cut(s)	189, 312, 834, 975
VpaK11BI	GGWCC	2 cut(s)	337, 890
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	4 cut(s)	57, 227, 233, 762
XmiI	GTMKAC	1 cut(s)	1119
XmnI	GAANNNNTTC	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.