Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

6220212 .. 6221365

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1086700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGGAGGAGCGAGCGAGGAAGAAATTACTGATACTCTACGCCACCCAAACCGGAAACGCTTTAGATGTCGCCGAGCGACTGGCCGCCAAGCCGAGCGCAGAGGCTGCCCCGTCCACCTCTCTCCCTCGACCAATGCGACGCCATAAGCAGTCCTCCTTTGCATTCAATTTTGTTCTTCTTCTGAGATGCTTAGCTCAAGAGGGCACTGTAATTTTTGTTGTTTCAACCACTGGCCAGGGAGATACTCCTGATCCCATGAAGGGGTTTTGGAAAGATCTTCTGCAGAAAAATCTGAGTAGGCAATGGCTGGACGGACTCCGTTACTCTGTTTTCGGATTGGGTGATTCCGGTTACCAGAAATTCAATCTTGATAGGAGACTTTTGGACCTTGGGGCAACCCCGATTGTCGAAAGAGGTTTGGGAGACGATCAGCACCCGTACGAGGCTGCTCTGGATCCGTGGATGGCATCATTGTGGAATATGTGGAATAAAATCGATCCCAACTACTTCCCCAATGGCCCAGACTTTTTTATTCCATATGAAAATTTTATGGCGAAACCAAAGATTCGGATTCTATATCACGACATTGACAAGGTGGATTCACAAGTTTCATCTAAATCAGGTAATTTGGCTGTTCATAGTTCCCCTCTTTCTTCTATAACCGTGTATTTGCAAATATCATTTTACGGACCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

234

Amino Acids

26.29

Weight (kDa)

7.81

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	12 - 155	4e-23	Flavodoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	4 cut(s)	248, 452, 465, 494
AcoI	YGGCCR	2 cut(s)	84, 235
AcsI	RAATTY	2 cut(s)	362, 547
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	263, 264, 445
AgsI	TTSAA	3 cut(s)	169, 228, 367
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	373, 420
AlwI	GGATC	4 cut(s)	248, 452, 465, 494
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	84, 235, 520
ApeKI	GCWGC	2 cut(s)	107, 449
ApoI	RAATTY	2 cut(s)	362, 547
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	3 cut(s)	388, 521, 692
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	388, 692
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	94, 436
BccI	CCATC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	373, 420
BfmI	CTRYAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	3 cut(s)	87, 108, 450
BlpI	GCTNAGC	1 cut(s)	193
BlsI	GCNGC	3 cut(s)	88, 109, 451
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	388, 692
BmgT120I	GGNCC	3 cut(s)	388, 521, 692
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	179, 479
Bpu1102I	GCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	238, 391, 461
BsaWI	WCCGGW	2 cut(s)	53, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 264, 445
Bse1I	ACTGG	2 cut(s)	87, 238
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	238, 391, 461
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	263, 264, 445
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	176, 287
BseNI	ACTGG	2 cut(s)	87, 238
BseRI	GAGGAG	2 cut(s)	20, 23
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	94, 436
BshFI	GGCC	3 cut(s)	86, 237, 522
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	54, 351
BsiWI	CGTACG	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	263, 264, 445
BsmAI	GTCTC	2 cut(s)	373, 420
BsmBI	CGTCTC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	86, 237, 522
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	5 cut(s)	253, 277, 430, 457, 499
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	86, 237, 522
BspCNI	CTCAG	2 cut(s)	177, 288
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	4 cut(s)	248, 452, 465, 494
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	87, 238
BssECI	CCNNGG	3 cut(s)	238, 391, 461
BssMI	GATC	5 cut(s)	253, 277, 430, 457, 499
BssNI	GRCGYC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	211, 667
BstACI	GRCGYC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	185, 193, 296
BstDSI	CCRYGG	1 cut(s)	461
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	256, 280, 433, 460, 502
BstMAI	GTCTC	2 cut(s)	373, 420
BstMBI	GATC	5 cut(s)	253, 277, 430, 457, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	94, 436
BstX2I	RGATCY	2 cut(s)	277, 457
BstYI	RGATCY	2 cut(s)	277, 457
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	86, 237, 522
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	207, 231
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	388, 521, 692
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	9 cut(s)	86, 94, 107, 197, 237, 310, 449, 522, 635
CviKI_1	RGCY	9 cut(s)	86, 94, 107, 197, 237, 310, 449, 522, 635
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	185, 193, 296
DpnI	GATC	5 cut(s)	255, 279, 432, 459, 501
DpnII	GATC	5 cut(s)	253, 277, 430, 457, 499
EaeI	YGGCCR	2 cut(s)	84, 235
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	388, 692
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	1 cut(s)	262
FaiI	YATR	9 cut(s)	147, 260, 485, 541, 543, 554, 580, 642, 662
FatI	CATG	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	87, 108, 450
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	3 cut(s)	87, 108, 450
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	3 cut(s)	87, 108, 450
HaeIII	GGCC	3 cut(s)	86, 237, 522
HapII	CCGG	2 cut(s)	54, 351
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	5 cut(s)	318, 347, 568, 574, 602
HpaII	CCGG	2 cut(s)	54, 351
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	4 cut(s)	186, 297, 338, 573
Hpy188III	TCNNGA	5 cut(s)	200, 251, 371, 455, 584
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	211, 667
HpyCH4V	TGCA	3 cut(s)	164, 286, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	185, 193, 296
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	253, 277, 430, 457, 499
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	94, 436
LweI	GCATC	2 cut(s)	179, 479
MaeIII	GTNAC	2 cut(s)	323, 353
MalI	GATC	5 cut(s)	255, 279, 432, 459, 501
MboI	GATC	5 cut(s)	253, 277, 430, 457, 499
MboII	GAAGA	5 cut(s)	34, 170, 173, 272, 648
MflI	RGATCY	2 cut(s)	277, 457
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	6 cut(s)	26, 169, 213, 362, 547, 628
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	12, 97, 130, 138, 166, 196, 410, 439, 660
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	2 cut(s)	54, 351
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	5 cut(s)	253, 277, 430, 457, 499
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	459
NmeAIII	GCCGAG	2 cut(s)	100, 120
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	4 cut(s)	347, 568, 574, 602
Pfl23II	CGTACG	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	88, 109, 451
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	237
PspLI	CGTACG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	3 cut(s)	388, 521, 692
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	277, 457
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	475
SatI	GCNGC	3 cut(s)	87, 108, 450
Sau3AI	GATC	5 cut(s)	253, 277, 430, 457, 499
Sau96I	GGNCC	3 cut(s)	388, 521, 692
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	6 cut(s)	122, 199, 393, 421, 600, 628
SfaNI	GCATC	2 cut(s)	179, 479
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	388, 692
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	26, 169, 213, 362, 547, 628
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	211, 667
TaqI	TCGA	3 cut(s)	130, 411, 498
TasI	AATT	6 cut(s)	26, 169, 213, 362, 547, 628
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	4 cut(s)	347, 568, 574, 602
TscAI	CASTG	2 cut(s)	214, 238
TseI	GCWGC	2 cut(s)	107, 449
TspDTI	ATGAA	4 cut(s)	275, 558, 603, 629
TspGWI	ACGGA	3 cut(s)	311, 330, 450
TspRI	CASTG	2 cut(s)	214, 238
VpaK11BI	GGWCC	2 cut(s)	388, 692
XapI	RAATTY	2 cut(s)	362, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.