Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

951198 .. 952099

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGGAGGAGAGGGCGAGGAAGAAACTACTGATACTCTACGCCACCCAAACCGGAAACGCTTTAGACGTCGCCGAGCGAGTGGGCCGCGAAGCCGAGCGCAGAGGCTGCCCCGTCCACCTTCTCTCCCTCGACCAATACGACGCCAGATGCTTAGTTCAAGAGGGCACTGTAATTTTTGTTGTTTCAACCACTGGCCAGGGAGATACTCCTGATCCCATGAAGGGGTTTTGGAAAGATCTTCTGCAGAAAAATCTGAGTAGGCAATGGCTGGAGGGACTCCGTTACGCTGTTTTCGGATTGGGTGATTCCGGTTACCAGAAATTCAATTTTGTGGCAAAGAAGCTTGATAGGAGACTTTTGGACCTTGGGGCAACCCCGATTGTCCAAAGAGGTTTGGGAGATCGATCAGCACCCGTCAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

9.23

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	12 - 137	4.4e-35	Flavodoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	2 cut(s)	69, 144
AfiI	CCNNNNNNNGG	2 cut(s)	224, 225
AgsI	TTSAA	3 cut(s)	161, 189, 328
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	85, 196
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	85, 364
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	88, 109
BlsI	GCNGC	2 cut(s)	89, 110
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	85, 364
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	69, 144
BsaJI	CCNNGG	2 cut(s)	199, 367
BsaWI	WCCGGW	2 cut(s)	53, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 225
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	199, 367
BseLI	CCNNNNNNNGG	2 cut(s)	224, 225
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	20, 23
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	87, 198
BshVI	ATCGAT	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	54, 312
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	224, 225
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	87, 198
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	214, 238, 403, 407
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	87, 198
BspCNI	CTCAG	1 cut(s)	249
BspDI	ATCGAT	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	199, 367
BssMI	GATC	4 cut(s)	214, 238, 403, 407
BssNI	GRCGYC	2 cut(s)	69, 144
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	2 cut(s)	69, 144
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	154, 257
BstEII	GGTNACC	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	4 cut(s)	217, 241, 406, 410
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	4 cut(s)	214, 238, 403, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	87, 198
BsuTUI	ATCGAT	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	168, 192
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	85, 364
ClaI	ATCGAT	1 cut(s)	406
CseI	GACGC	1 cut(s)	152
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	6 cut(s)	87, 95, 108, 198, 271, 346
CviKI_1	RGCY	6 cut(s)	87, 95, 108, 198, 271, 346
DdeI	CTNAG	2 cut(s)	154, 257
DpnI	GATC	4 cut(s)	216, 240, 405, 409
DpnII	GATC	4 cut(s)	214, 238, 403, 407
EaeI	YGGCCR	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	364
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	1 cut(s)	223
FaiI	YATR	2 cut(s)	221, 427
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	88, 109
Fsp4HI	GCNGC	2 cut(s)	88, 109
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	88, 109
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	87, 198
HapII	CCGG	2 cut(s)	54, 312
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	2 cut(s)	69, 144
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	279, 308
HpaII	CCGG	2 cut(s)	54, 312
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	258, 299
Hpy188III	TCNNGA	2 cut(s)	161, 212
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	74, 146
HpyAV	CCTTC	2 cut(s)	131, 217
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	154, 257
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	2 cut(s)	69, 144
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	214, 238, 403, 407
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	140
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	284, 314
MalI	GATC	4 cut(s)	216, 240, 405, 409
MboI	GATC	4 cut(s)	214, 238, 403, 407
MboII	GAAGA	2 cut(s)	34, 233
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	3 cut(s)	174, 323, 328
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	6, 12, 98, 140, 157, 268, 386
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	2 cut(s)	54, 312
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	214, 238, 403, 407
NlaIII	CATG	1 cut(s)	223
NmeAIII	GCCGAG	2 cut(s)	100, 121
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 138
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	89, 110
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	85, 364
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	238
SatI	GCNGC	2 cut(s)	88, 109
Sau3AI	GATC	4 cut(s)	214, 238, 403, 407
Sau96I	GGNCC	2 cut(s)	85, 364
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	6 cut(s)	72, 123, 348, 369, 397, 425
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	364
Sse9I	AATT	3 cut(s)	174, 323, 328
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	132, 406
TasI	AATT	3 cut(s)	174, 323, 328
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	308
TscAI	CASTG	2 cut(s)	175, 199
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	175, 199
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.