MD09G1086400.v1.1

Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin DRE2 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
6183904 .. 6187182
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1086400.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGGAGGAGGAGAGAACGAGGAAGAAACTACTGATACTCTACGCCACCCAAACCGGAAACGCTTTATCCGTCGCCGAGCGAGTGGGCCGCGAAACCGAGCGCAGAGGTTGCCCCGTCCACCTTCTCTCCCTCGACCAATACGACGCCAGATGCTTAGCTCAAGAGGGCACTGTAATTTTTGTTGTTTCAACCACTGGCCAGGGAGATACTCCTGATCCCATGAATGGGTTTTGGAAAGATCTTCTGCAGAAAAATCTGAGTAGGCAATGGCTGGAGGGACTCCGTTACGCTGTTTTCGGATTGGTGATTCCGTTTGTGGCAAAGAAGCTTGATAGGAGACTTTTGGACCTTGGGGCAACCCCGATTGTCCGAAGAGGTTTGGGAGATGATCAGCACCCATCAGGGTGTGAAGCTGCTCTGGATCCGTGGATGGCATCATTGTGGAATATGTTGAATAAAATCGATCCCAACTACTTGCCAAATGGCCCAGACTTTTTGATTCCATATGAAAATTTCATGGCGAAACCAAAGGTTCGGATTCTGTATCGTGACATTGACAAGGTGGATTCACAAGTTTCGTCTAAGTCAGACTTGAATCACATGGCGTTGCAGATTGAAAGGGCACGCAGAATGTCTCCTTTGAAGTTTTCTCTTGACAGGCCTGACTGCATTCTTAAATTGGTAAAAAATGAACCACTGACTAAATCAGGTTGTAAAGACGAAGAGGTGCATTACTTCGAATTTGAATTTGTTTCATCTCCTATTCCATATGAAGGTGGTGACGTACTTGAGGTTCTCCCCAGTCAAAGTTCTGCTGCAGTGGATGCTTTCATACTTCGTTGTAATTTGGACCCTGAATCATTCATCACAGTCATGAGTATGTTTGCATCCGCTGAACATGAAAGAGAAAGACTTCAGTATTTTGTGTCACCAGAAGGAAGAGATGATCTATACCAATACAATCAGAGGGAACAACGGACTGTTCTGGAGGTTTTAGAGGATTTCTCCTCTGTTCAAATGCCACTCGAATGGCTGGTACAGTTGGTTCCTCCTTTGAAAAGGAGGGCTTTCTCCATCTCTTCGTCCCCTTCTGCCCACCTCAATCAAGTTCACTTAACAGTTAATGTAGTATCATGGACAACGCTGTTCAAAACAATTCGAGCAGGTCTCTGTTCAAACTGGCTATCCAAGCTTGATCCTGAACAACGTGTTTACGTTCCAGTGTGGTTTCAGAAGGGTTCCCTTCCTCCCCCACGACCATCACTTCCTCTCAGTCTCATTGGACCTGGAACTGGCTGTGCGCCTTTTCGTGGATTTGTGGAGGAAAGAGCTGTAAGAACTTGTAAACAAACAAACACCAAGACCAAAGCATGA

Protein Analysis

458

Amino Acids

51.88

Weight (kDa)

7.04

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavodoxin_1 PF00258 12 - 143 8.3e-24 Flavodoxin
FAD_binding_1 PF00667 288 - 394 1.4e-26 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1154
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 88, 891
AclWI GGATC 5 cut(s) 209, 416, 429, 458, 1190
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 3 cut(s) 511, 740, 746
AcuI CTGAAG 1 cut(s) 899
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 786, 1038
AfiI CCNNNNNNNGG 5 cut(s) 224, 225, 773, 1292, 1310
AflIII ACRYGT 1 cut(s) 1207
AjnI CCWGG 2 cut(s) 198, 1285
AluBI AGCT 5 cut(s) 158, 328, 413, 1192, 1331
AluI AGCT 5 cut(s) 158, 328, 413, 1192, 1331
Alw26I GTCTC 4 cut(s) 331, 639, 1172, 1280
AlwI GGATC 5 cut(s) 209, 416, 429, 458, 1190
AoxI GGCC 4 cut(s) 85, 196, 484, 659
ApeKI GCWGC 2 cut(s) 413, 815
ApoI RAATTY 3 cut(s) 511, 740, 746
Asp700I GAANNNNTTC 1 cut(s) 912
AspLEI GCGC 2 cut(s) 102, 1303
AspS9I GGNCC 5 cut(s) 85, 346, 485, 850, 1283
AsuHPI GGTGA 3 cut(s) 316, 791, 921
AsuII TTCGAA 1 cut(s) 738
AvaII GGWCC 3 cut(s) 346, 850, 1283
BaeGI GKGCMC 2 cut(s) 170, 625
BalI TGGCCA 1 cut(s) 198
BamHI GGATCC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 400, 802
BccI CCATC 4 cut(s) 406, 424, 1082, 1267
BciT130I CCWGG 2 cut(s) 200, 1287
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 4 cut(s) 331, 639, 1172, 1280
BfmI CTRYAG 2 cut(s) 245, 816
BfuAI ACCTGC 1 cut(s) 1154
BglII AGATCT 1 cut(s) 238
BisI GCNGC 3 cut(s) 88, 414, 816
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 3 cut(s) 89, 415, 817
Bme1390I CCNGG 2 cut(s) 200, 1287
Bme18I GGWCC 3 cut(s) 346, 850, 1283
BmgT120I GGNCC 5 cut(s) 85, 346, 485, 850, 1283
BmiI GGNNCC 4 cut(s) 423, 852, 1047, 1240
BmrFI CCNGG 2 cut(s) 200, 1287
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 4 cut(s) 140, 443, 814, 896
BmuI ACTGGG 1 cut(s) 795
BplI GAGNNNNNCTC 4 cut(s) 989, 1021, 1152, 1184
BpmI CTGGAG 2 cut(s) 293, 1007
Bpu1102I GCTNAGC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 144, 809
Bsa29I ATCGAT 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 1172
BsaJI CCNNGG 3 cut(s) 199, 349, 425
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 225, 773, 1292, 1310
Bse1I ACTGG 5 cut(s) 199, 801, 1184, 1220, 1297
Bse3DI GCAATG 1 cut(s) 272
BseBI CCWGG 2 cut(s) 200, 1287
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 199, 349, 425
BseGI GGATG 3 cut(s) 435, 829, 887
BseLI CCNNNNNNNGG 5 cut(s) 224, 225, 773, 1292, 1310
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 248, 1285
BseNI ACTGG 5 cut(s) 199, 801, 1184, 1220, 1297
BseRI GAGGAG 3 cut(s) 20, 23, 997
BseSI GKGCMC 2 cut(s) 170, 625
BseXI GCAGC 2 cut(s) 400, 802
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 87, 198, 486, 661
BshVI ATCGAT 1 cut(s) 462
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 291, 1069
BslI CCNNNNNNNGG 5 cut(s) 224, 225, 773, 1292, 1310
BsmAI GTCTC 4 cut(s) 331, 639, 1172, 1280
BsmFI GGGAC 2 cut(s) 291, 1069
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 4 cut(s) 87, 198, 486, 661
Bso31I GGTCTC 1 cut(s) 1172
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 2 cut(s) 170, 625
Bsp143I GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 2 cut(s) 88, 891
BspANI GGCC 4 cut(s) 87, 198, 486, 661
BspCNI CTCAG 2 cut(s) 249, 1284
BspDI ATCGAT 1 cut(s) 462
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 4 cut(s) 423, 852, 1047, 1240
BspMAI CTGCAG 2 cut(s) 249, 820
BspMI ACCTGC 1 cut(s) 1154
BspPI GGATC 5 cut(s) 209, 416, 429, 458, 1190
BspT104I TTCGAA 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 1172
BsrDI GCAATG 1 cut(s) 272
BsrI ACTGG 5 cut(s) 199, 801, 1184, 1220, 1297
BssECI CCNNGG 3 cut(s) 199, 349, 425
BssMI GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 200, 1287
Bst4CI ACNGT 5 cut(s) 172, 871, 982, 1041, 1120
Bst6I CTCTTC 4 cut(s) 367, 717, 934, 1084
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 2 cut(s) 108, 824
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 4 cut(s) 154, 257, 582, 1271
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 3 cut(s) 435, 829, 887
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 102, 1303
BstKTI GATC 7 cut(s) 217, 241, 391, 424, 466, 949, 1198
BstMAI GTCTC 4 cut(s) 331, 639, 1172, 1280
BstMBI GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
BstMWI GCNNNNNNNGC 3 cut(s) 108, 824, 1189
BstNI CCWGG 2 cut(s) 200, 1287
BstSCI CCNGG 2 cut(s) 198, 1285
BstSFI CTRYAG 2 cut(s) 245, 816
BstSLI GKGCMC 2 cut(s) 170, 625
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 400, 802
BstX2I RGATCY 2 cut(s) 238, 421
BstXI CCANNNNNNTGG 1 cut(s) 1029
BstYI RGATCY 2 cut(s) 238, 421
Bsu15I ATCGAT 1 cut(s) 462
BsuRI GGCC 4 cut(s) 87, 198, 486, 661
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 425
BtsCI GGATG 3 cut(s) 435, 829, 887
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 5 cut(s) 168, 192, 695, 825, 1227
BveI ACCTGC 1 cut(s) 1154
Cac8I GCNNGC 1 cut(s) 625
CciI TCATGA 1 cut(s) 873
CfoI GCGC 2 cut(s) 102, 1303
Cfr13I GGNCC 5 cut(s) 85, 346, 485, 850, 1283
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 785, 1037
CviAII CATG 7 cut(s) 220, 517, 601, 874, 899, 1134, 1371
CviQI GTAC 2 cut(s) 785, 1037
DdeI CTNAG 4 cut(s) 154, 257, 582, 1271
DpnI GATC 7 cut(s) 216, 240, 390, 423, 465, 948, 1197
DpnII GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 4 cut(s) 367, 717, 934, 1084
EarI CTCTTC 4 cut(s) 367, 717, 934, 1084
Eco130I CCWWGG 1 cut(s) 349
Eco147I AGGCCT 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 1172
Eco47I GGWCC 3 cut(s) 346, 850, 1283
Eco57I CTGAAG 1 cut(s) 899
EcoRII CCWGG 2 cut(s) 198, 1285
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 7 cut(s) 223, 520, 604, 877, 902, 1137, 1374
FalI AAGNNNNNCTT 4 cut(s) 575, 607, 1051, 1083
FaqI GGGAC 2 cut(s) 291, 1069
FatI CATG 7 cut(s) 219, 516, 600, 873, 898, 1133, 1370
FauNDI CATATG 2 cut(s) 505, 769
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 88, 414, 816
FokI GGATG 3 cut(s) 442, 836, 874
Fsp4HI GCNGC 3 cut(s) 88, 414, 816
GlaI GCGC 2 cut(s) 101, 1302
GluI GCNGC 3 cut(s) 88, 414, 816
GsuI CTGGAG 2 cut(s) 293, 1007
HaeIII GGCC 4 cut(s) 87, 198, 486, 661
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 152
HhaI GCGC 2 cut(s) 102, 1303
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 7 cut(s) 223, 520, 604, 877, 902, 1137, 1374
Hin6I GCGC 2 cut(s) 100, 1301
HinP1I GCGC 2 cut(s) 100, 1301
HindIII AAGCTT 2 cut(s) 326, 1190
HinfI GANTC 7 cut(s) 279, 307, 499, 538, 566, 595, 857
HpaII CCGG 1 cut(s) 54
HphI GGTGA 3 cut(s) 316, 791, 921
Hpy166II GTNNAC 4 cut(s) 118, 1111, 1213, 1346
Hpy188I TCNGA 7 cut(s) 258, 299, 371, 537, 589, 966, 1233
Hpy188III TCNNGA 8 cut(s) 161, 212, 419, 548, 653, 874, 986, 1199
Hpy8I GTNNAC 4 cut(s) 118, 1111, 1213, 1346
Hpy99I CGWCG 2 cut(s) 74, 146
HpyAV CCTTC 6 cut(s) 131, 767, 929, 1098, 1228, 1253
HpyCH4III ACNGT 5 cut(s) 172, 871, 982, 1041, 1120
HpyCH4IV ACGT 3 cut(s) 783, 1207, 1215
HpyCH4V TGCA 6 cut(s) 247, 610, 669, 730, 818, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 824, 1189
HpyF3I CTNAG 4 cut(s) 154, 257, 582, 1271
HpySE526I ACGT 3 cut(s) 783, 1207, 1215
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 7 cut(s) 223, 520, 604, 877, 902, 1137, 1374
HspAI GCGC 2 cut(s) 100, 1301
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
Lsp1109I GCAGC 2 cut(s) 400, 802
LweI GCATC 4 cut(s) 140, 443, 814, 896
MaeII ACGT 3 cut(s) 783, 1207, 1215
MaeIII GTNAC 4 cut(s) 284, 548, 779, 927
MalI GATC 7 cut(s) 216, 240, 390, 423, 465, 948, 1197
MboI GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
MboII GAAGA 6 cut(s) 34, 233, 384, 734, 951, 1071
MflI RGATCY 2 cut(s) 238, 421
MhlI GDGCHC 2 cut(s) 170, 625
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 7 cut(s) 174, 511, 677, 740, 746, 844, 1155
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 273
Mox20I TGGCCA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 912
MscI TGGCCA 1 cut(s) 198
MseI TTAA 3 cut(s) 675, 1115, 1122
MslI CAYNNNNRTG 5 cut(s) 403, 439, 872, 878, 1027
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 200, 1287
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 2 cut(s) 200, 1287
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 108, 824, 1189
NdeI CATATG 2 cut(s) 505, 769
NdeII GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
NlaIII CATG 7 cut(s) 223, 520, 604, 877, 902, 1137, 1374
NlaIV GGNNCC 4 cut(s) 423, 852, 1047, 1240
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 3 cut(s) 548, 779, 927
NspV TTCGAA 1 cut(s) 738
PagI TCATGA 1 cut(s) 873
PceI AGGCCT 1 cut(s) 661
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 138
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 6 cut(s) 307, 499, 538, 566, 595, 857
PkrI GCNGC 3 cut(s) 89, 415, 817
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 198, 1285
PspGI CCWGG 2 cut(s) 198, 1285
PspN4I GGNNCC 4 cut(s) 423, 852, 1047, 1240
PspPI GGNCC 5 cut(s) 85, 346, 485, 850, 1283
PsrI GAACNNNNNNTAC 4 cut(s) 777, 809, 1029, 1061
PstI CTGCAG 2 cut(s) 249, 820
PsuI RGATCY 2 cut(s) 238, 421
RsaI GTAC 2 cut(s) 786, 1038
RsaNI GTAC 2 cut(s) 785, 1037
RseI CAYNNNNRTG 5 cut(s) 403, 439, 872, 878, 1027
SaqAI TTAA 3 cut(s) 675, 1115, 1122
SatI GCNGC 3 cut(s) 88, 414, 816
Sau3AI GATC 7 cut(s) 214, 238, 388, 421, 463, 946, 1195
Sau96I GGNCC 5 cut(s) 85, 346, 485, 850, 1283
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 2 cut(s) 200, 1287
SduI GDGCHC 2 cut(s) 170, 625
SfaNI GCATC 4 cut(s) 140, 443, 814, 896
SfcI CTRYAG 2 cut(s) 245, 816
SfuI TTCGAA 1 cut(s) 738
SinI GGWCC 3 cut(s) 346, 850, 1283
SmiMI CAYNNNNRTG 5 cut(s) 403, 439, 872, 878, 1027
SmlI CTYRAG 2 cut(s) 159, 788
SmoI CTYRAG 2 cut(s) 159, 788
Sse9I AATT 7 cut(s) 174, 511, 677, 740, 746, 844, 1155
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 2 cut(s) 88, 891
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 2 cut(s) 198, 1285
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 5 cut(s) 172, 871, 982, 1041, 1120
TaiI ACGT 3 cut(s) 786, 1210, 1218
TaqI TCGA 5 cut(s) 132, 462, 738, 1026, 1159
TasI AATT 7 cut(s) 174, 511, 677, 740, 746, 844, 1155
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 6 cut(s) 307, 499, 538, 566, 595, 857
Tru1I TTAA 3 cut(s) 675, 1115, 1122
Tru9I TTAA 3 cut(s) 675, 1115, 1122
TscAI CASTG 5 cut(s) 175, 199, 702, 825, 1227
TseFI GTSAC 3 cut(s) 548, 779, 927
TseI GCWGC 2 cut(s) 413, 815
Tsp45I GTSAC 3 cut(s) 548, 779, 927
TspDTI ATGAA 9 cut(s) 236, 505, 522, 705, 744, 786, 820, 853, 915
TspGWI ACGGA 5 cut(s) 58, 272, 300, 414, 991
TspRI CASTG 5 cut(s) 175, 199, 702, 825, 1227
VpaK11BI GGWCC 3 cut(s) 346, 850, 1283
XapI RAATTY 3 cut(s) 511, 740, 746
XmnI GAANNNNTTC 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.